Wall clock time and date at job start Mon Mar 30 2020 05:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99946 * 2 1 4 4 H 1.48497 * 109.47338 * 270.00090 * 3 2 1 5 5 H 1.48504 * 109.47094 * 30.00478 * 3 2 1 6 6 H 1.48502 * 109.47060 * 149.99904 * 3 2 1 7 7 C 1.37878 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00102 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00109 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47346 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.66969 * 303.22906 * 10 9 7 12 12 C 1.54705 * 110.75270 * 179.80035 * 10 9 7 13 13 C 1.51643 * 101.94806 * 216.44789 * 12 10 9 14 14 C 1.37776 * 132.16691 * 195.60404 * 13 12 10 15 15 C 1.38335 * 120.00519 * 179.06603 * 14 13 12 16 16 C 1.38288 * 119.77699 * 0.05541 * 15 14 13 17 17 C 1.38020 * 120.33605 * 0.14667 * 16 15 14 18 18 Cl 1.73605 * 119.89361 * 179.97438 * 17 16 15 19 19 C 1.38845 * 107.04952 * 15.14220 * 13 12 10 20 20 O 1.36163 * 111.22422 * 1.43647 * 19 13 12 21 21 H 0.97002 * 120.00078 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47088 * 59.99201 * 9 7 2 23 23 H 1.09001 * 109.46832 * 299.99702 * 9 7 2 24 24 H 1.09001 * 110.93240 * 98.28896 * 12 10 9 25 25 H 1.08998 * 110.93773 * 334.61302 * 12 10 9 26 26 H 1.08001 * 119.99420 * 359.07374 * 14 13 12 27 27 H 1.08003 * 120.11420 * 180.02562 * 15 14 13 28 28 H 1.08005 * 119.83132 * 180.16342 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 1 3.6226 -3.1857 0.8527 12 6 5.5682 -2.6710 -0.0045 13 6 5.8528 -3.8720 -0.8856 14 6 6.9894 -4.6250 -1.0838 15 6 6.9632 -5.7019 -1.9517 16 6 5.7938 -6.0179 -2.6189 17 6 4.6549 -5.2626 -2.4254 18 17 3.1934 -5.6692 -3.2694 19 6 4.6746 -4.1741 -1.5550 20 8 3.6854 -3.2956 -1.2329 21 1 -0.4850 0.8401 0.0004 22 1 3.8745 -0.6807 0.8904 23 1 3.8751 -0.6797 -0.8895 24 1 5.9571 -2.8255 1.0019 25 1 5.9769 -1.7607 -0.4430 26 1 7.9009 -4.3745 -0.5615 27 1 7.8530 -6.2936 -2.1081 28 1 5.7716 -6.8601 -3.2947 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261102887.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:02 Heat of formation + Delta-G solvation = -19.936575 kcal Electronic energy + Delta-G solvation = -14295.048457 eV Core-core repulsion = 11723.024387 eV Total energy + Delta-G solvation = -2572.024070 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.81699 -37.46695 -36.11676 -33.39451 -32.23386 -30.66646 -29.70359 -27.33807 -23.41544 -22.28924 -21.51032 -20.51089 -17.20282 -16.91134 -16.53542 -15.78260 -15.11501 -14.45294 -14.02323 -13.62690 -13.18937 -12.81652 -12.73022 -12.31284 -11.98441 -11.86689 -11.62133 -11.26025 -11.07386 -10.73458 -10.57713 -10.43388 -9.99029 -9.72362 -9.27023 -8.65557 -8.57328 -7.87292 -6.05581 -4.04456 1.19999 1.38496 2.38822 3.28543 3.35500 3.35936 3.55976 3.73427 4.41484 4.63860 4.80385 5.03705 5.19206 5.26933 5.32263 5.41190 5.48986 5.80644 5.94675 6.14430 6.22323 6.24906 6.32086 6.44512 6.64396 6.93783 7.10624 7.52900 7.71227 8.49125 9.00620 9.54066 11.07820 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.031883 B = 0.007083 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.991426 B = 3951.944958 C = 4645.730994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.077 0.923 9 C -0.011 4.011 10 C 0.098 3.902 11 H 0.084 0.916 12 C -0.111 4.111 13 C -0.168 4.168 14 C -0.069 4.069 15 C -0.152 4.152 16 C -0.081 4.081 17 C -0.066 4.066 18 Cl -0.065 7.065 19 C 0.131 3.869 20 O -0.268 6.268 21 H 0.264 0.736 22 H 0.040 0.960 23 H 0.024 0.976 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.126 0.874 27 H 0.132 0.868 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.652 -9.874 -2.597 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.095 0.905 9 C -0.048 4.048 10 C 0.042 3.958 11 H 0.102 0.898 12 C -0.148 4.148 13 C -0.169 4.169 14 C -0.087 4.087 15 C -0.170 4.170 16 C -0.100 4.100 17 C -0.093 4.093 18 Cl -0.037 7.037 19 C 0.082 3.918 20 O -0.180 6.180 21 H 0.073 0.927 22 H 0.058 0.942 23 H 0.043 0.957 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.144 0.856 27 H 0.149 0.851 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.122 -9.709 -2.767 17.359 hybrid contribution 0.301 0.900 -0.051 0.951 sum 14.423 -8.809 -2.818 17.133 Atomic orbital electron populations 1.69904 1.06255 1.26883 1.50710 1.24992 0.94754 0.98978 0.94564 0.86821 0.80249 0.83854 0.78604 1.20191 1.21252 1.19075 1.20980 0.88643 0.94898 1.51033 0.90521 1.19785 0.98589 0.88755 0.97672 1.23611 0.90843 0.96987 0.84320 0.89793 1.22047 0.97692 0.95663 0.99438 1.20963 0.93753 0.99495 1.02721 1.20371 0.96846 0.94077 0.97405 1.20864 0.97792 0.99160 0.99227 1.20728 0.90690 0.98874 0.99669 1.20147 0.90044 0.97117 1.01993 1.98366 1.35607 1.93136 1.76558 1.19537 0.88939 0.89373 0.93945 1.87178 1.41054 1.49281 1.40512 0.92650 0.94215 0.95748 0.89272 0.89049 0.85583 0.85053 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.84 13.96 55.43 0.77 -27.07 15 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 3 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 15 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.27 -6.05 6.54 56.52 0.37 -5.68 15 7 C -0.52 -14.77 9.51 -34.44 -0.33 -15.10 15 8 H 0.08 2.41 7.99 -52.49 -0.42 1.99 15 9 C -0.01 -0.25 3.75 -27.89 -0.10 -0.36 15 10 C 0.10 1.96 3.55 -25.84 -0.09 1.86 15 11 H 0.08 1.65 8.14 -51.93 -0.42 1.23 15 12 C -0.11 -1.73 6.65 -26.52 -0.18 -1.91 15 13 C -0.17 -2.61 6.27 -104.10 -0.65 -3.26 15 14 C -0.07 -0.85 10.03 -39.71 -0.40 -1.24 15 15 C -0.15 -1.70 10.07 -39.53 -0.40 -2.09 15 16 C -0.08 -1.02 9.79 -39.64 -0.39 -1.41 15 17 C -0.07 -1.06 6.34 -39.24 -0.25 -1.31 15 18 Cl -0.07 -1.07 28.94 -51.86 -1.50 -2.57 15 19 C 0.13 2.38 6.83 -38.93 -0.27 2.11 15 20 O -0.27 -5.85 10.63 -20.26 -0.22 -6.07 15 21 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 22 H 0.04 0.88 7.20 -51.93 -0.37 0.50 15 23 H 0.02 0.57 7.57 -51.93 -0.39 0.18 15 24 H 0.09 1.15 8.14 -51.93 -0.42 0.72 15 25 H 0.09 1.37 7.92 -51.93 -0.41 0.96 15 26 H 0.13 1.19 8.06 -52.49 -0.42 0.77 15 27 H 0.13 1.04 8.06 -52.48 -0.42 0.61 15 28 H 0.14 1.35 8.06 -52.48 -0.42 0.93 15 LS Contribution 259.45 15.07 3.91 3.91 Total: -1.00 -31.50 259.45 -7.73 -39.23 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -2.88 Total: -3.32 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -3.15 Total: -20.81 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.77 Total: -27.07 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.22 Total: -6.07 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.50 -7.73 -39.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102887.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.295 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds