Wall clock time and date at job start Mon Mar 30 2020 05:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99946 * 2 1 4 4 H 1.48497 * 109.47338 * 270.00090 * 3 2 1 5 5 H 1.48504 * 109.47094 * 30.00478 * 3 2 1 6 6 H 1.48502 * 109.47060 * 149.99904 * 3 2 1 7 7 C 1.37878 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00102 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00109 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47346 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.66969 * 303.22906 * 10 9 7 12 12 C 1.54705 * 110.75270 * 179.80035 * 10 9 7 13 13 C 1.51643 * 101.94806 * 216.44789 * 12 10 9 14 14 C 1.37776 * 132.16691 * 195.60404 * 13 12 10 15 15 C 1.38335 * 120.00519 * 179.06603 * 14 13 12 16 16 C 1.38288 * 119.77699 * 0.05541 * 15 14 13 17 17 C 1.38020 * 120.33605 * 0.14667 * 16 15 14 18 18 Cl 1.73605 * 119.89361 * 179.97438 * 17 16 15 19 19 C 1.38845 * 107.04952 * 15.14220 * 13 12 10 20 20 O 1.36163 * 111.22422 * 1.43647 * 19 13 12 21 21 H 0.97002 * 120.00078 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47088 * 59.99201 * 9 7 2 23 23 H 1.09001 * 109.46832 * 299.99702 * 9 7 2 24 24 H 1.09001 * 110.93240 * 98.28896 * 12 10 9 25 25 H 1.08998 * 110.93773 * 334.61302 * 12 10 9 26 26 H 1.08001 * 119.99420 * 359.07374 * 14 13 12 27 27 H 1.08003 * 120.11420 * 180.02562 * 15 14 13 28 28 H 1.08005 * 119.83132 * 180.16342 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 1 3.6226 -3.1857 0.8527 12 6 5.5682 -2.6710 -0.0045 13 6 5.8528 -3.8720 -0.8856 14 6 6.9894 -4.6250 -1.0838 15 6 6.9632 -5.7019 -1.9517 16 6 5.7938 -6.0179 -2.6189 17 6 4.6549 -5.2626 -2.4254 18 17 3.1934 -5.6692 -3.2694 19 6 4.6746 -4.1741 -1.5550 20 8 3.6854 -3.2956 -1.2329 21 1 -0.4850 0.8401 0.0004 22 1 3.8745 -0.6807 0.8904 23 1 3.8751 -0.6797 -0.8895 24 1 5.9571 -2.8255 1.0019 25 1 5.9769 -1.7607 -0.4430 26 1 7.9009 -4.3745 -0.5615 27 1 7.8530 -6.2936 -2.1081 28 1 5.7716 -6.8601 -3.2947 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261102887.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:02 Heat of formation + Delta-G solvation = -39.799515 kcal Electronic energy + Delta-G solvation = -14295.909778 eV Core-core repulsion = 11723.024387 eV Total energy + Delta-G solvation = -2572.885392 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.08483 -38.66369 -37.32119 -35.36079 -33.74984 -32.26385 -30.81319 -28.89111 -25.13685 -23.43629 -22.66451 -22.16139 -19.00091 -18.44699 -17.82035 -17.07086 -16.61603 -15.84741 -15.53407 -14.91995 -14.69652 -14.22955 -14.00687 -13.88161 -13.71439 -13.32200 -12.86390 -12.65217 -12.40696 -12.16073 -12.03348 -11.82979 -11.73142 -11.52450 -11.31570 -10.79478 -9.72168 -9.09431 -8.29466 -6.34862 0.15130 0.28947 1.20714 1.35804 1.38636 1.49378 2.33346 2.36683 2.62791 3.06240 3.48511 3.61286 3.95847 4.09359 4.20917 4.34373 4.39612 4.52877 4.77319 4.82783 4.89381 5.07301 5.17485 5.29145 5.35243 5.41770 5.55684 5.74621 6.18139 6.28899 6.71799 7.27736 8.88135 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.031883 B = 0.007083 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.991426 B = 3951.944958 C = 4645.730994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.232 1.232 7 C -0.529 4.529 8 H 0.022 0.978 9 C -0.006 4.006 10 C 0.090 3.910 11 H 0.071 0.929 12 C -0.097 4.097 13 C -0.173 4.173 14 C -0.061 4.061 15 C -0.130 4.130 16 C -0.080 4.080 17 C -0.084 4.084 18 Cl -0.085 7.085 19 C 0.080 3.920 20 O -0.315 6.315 21 H 0.266 0.734 22 H 0.061 0.939 23 H 0.025 0.975 24 H 0.121 0.879 25 H 0.100 0.900 26 H 0.166 0.834 27 H 0.178 0.822 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.134 -9.900 -2.390 21.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.155 1.155 7 C -0.567 4.567 8 H 0.041 0.959 9 C -0.044 4.044 10 C 0.035 3.965 11 H 0.089 0.911 12 C -0.133 4.133 13 C -0.174 4.174 14 C -0.079 4.079 15 C -0.148 4.148 16 C -0.098 4.098 17 C -0.111 4.111 18 Cl -0.056 7.056 19 C 0.033 3.967 20 O -0.229 6.229 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.043 0.957 24 H 0.139 0.861 25 H 0.119 0.881 26 H 0.184 0.816 27 H 0.196 0.804 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 18.634 -9.767 -2.557 21.193 hybrid contribution -1.082 0.716 -0.163 1.307 sum 17.552 -9.051 -2.720 19.935 Atomic orbital electron populations 1.70088 1.08585 1.28229 1.52520 1.26097 0.95706 1.03788 0.93960 0.85589 0.79936 0.77602 0.79091 1.19748 1.20843 1.15481 1.21289 0.91802 0.92980 1.50608 0.95923 1.19704 0.94677 0.91656 0.98323 1.23474 0.94471 0.94661 0.83929 0.91071 1.21932 0.93573 0.96357 1.01466 1.21138 0.93916 0.99881 1.02449 1.20865 0.96876 0.93136 0.96985 1.21457 0.98362 0.98252 0.96713 1.21162 0.89933 0.98827 0.99910 1.20578 0.90603 0.97682 1.02273 1.98351 1.37195 1.93184 1.76911 1.19946 0.89495 0.90638 0.96638 1.87088 1.43464 1.51104 1.41290 0.92479 0.92089 0.95656 0.86099 0.88144 0.81641 0.80428 0.82002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.79 13.96 21.45 0.30 -61.49 15 2 C 0.00 0.05 5.47 84.66 0.46 0.51 15 3 Si 0.96 44.13 27.47 68.60 1.88 46.02 15 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 15 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 6 H -0.23 -9.38 6.54 99.48 0.65 -8.73 15 7 C -0.53 -31.66 9.51 25.60 0.24 -31.42 15 8 H 0.02 1.54 7.99 -2.91 -0.02 1.51 15 9 C -0.01 -0.30 3.75 29.85 0.11 -0.19 15 10 C 0.09 3.67 3.55 31.17 0.11 3.78 15 11 H 0.07 2.95 8.14 -2.39 -0.02 2.93 15 12 C -0.10 -2.78 6.65 30.73 0.20 -2.57 15 13 C -0.17 -4.94 6.27 -19.53 -0.12 -5.06 15 14 C -0.06 -1.19 10.03 22.18 0.22 -0.97 15 15 C -0.13 -2.21 10.07 22.30 0.22 -1.98 15 16 C -0.08 -1.77 9.79 22.23 0.22 -1.56 15 17 C -0.08 -2.69 6.34 22.49 0.14 -2.55 15 18 Cl -0.09 -2.89 28.94 -2.72 -0.08 -2.96 15 19 C 0.08 2.91 6.83 22.69 0.15 3.07 15 20 O -0.32 -14.46 10.63 -95.41 -1.01 -15.48 15 21 H 0.27 16.00 8.31 -92.71 -0.77 15.23 15 22 H 0.06 2.57 7.20 -2.39 -0.02 2.56 15 23 H 0.03 1.17 7.57 -2.39 -0.02 1.15 15 24 H 0.12 2.65 8.14 -2.39 -0.02 2.63 15 25 H 0.10 2.70 7.92 -2.39 -0.02 2.68 15 26 H 0.17 1.98 8.06 -2.91 -0.02 1.96 15 27 H 0.18 1.47 8.06 -2.91 -0.02 1.45 15 28 H 0.16 2.65 8.06 -2.91 -0.02 2.63 15 Total: -1.00 -74.72 259.45 4.17 -70.55 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.11 Total: 2.30 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 1.97 Total: -38.94 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.30 Total: -61.49 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -1.01 Total: -15.48 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.02 kcal Atomic # 17 Polarization: -2.89 SS G_CDS: -0.08 Total: -2.96 kcal Total: -74.72 4.17 -70.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102887.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.753 kcal (2) G-P(sol) polarization free energy of solvation -74.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds