Wall clock time and date at job start Mon Mar 30 2020 05:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86800 * 119.99742 * 2 1 4 4 H 1.48504 * 109.46908 * 240.00329 * 3 2 1 5 5 H 1.48497 * 109.47388 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47041 * 120.00680 * 3 2 1 7 7 C 1.39872 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00373 * 197.88140 * 7 2 1 9 9 C 1.41307 * 119.99895 * 17.88049 * 7 2 1 10 10 C 1.41000 * 120.19848 * 204.42855 * 9 7 2 11 11 C 1.36147 * 120.50400 * 180.02562 * 10 9 7 12 12 C 1.39578 * 120.54477 * 359.97438 * 11 10 9 13 13 O 1.35005 * 132.07409 * 179.97438 * 12 11 10 14 14 C 1.35112 * 111.66251 * 179.97438 * 13 12 11 15 15 C 1.39000 * 132.27225 * 180.02562 * 14 13 12 16 16 C 1.37908 * 120.09907 * 179.97438 * 15 14 13 17 17 C 1.38565 * 120.61612 * 359.97438 * 16 15 14 18 18 C 1.37953 * 120.10593 * 0.02562 * 17 16 15 19 19 C 1.39025 * 119.72739 * 359.97438 * 18 17 16 20 20 C 1.40657 * 119.53352 * 359.97438 * 12 11 10 21 21 C 1.38431 * 120.42962 * 0.02587 * 20 12 11 22 22 H 0.96997 * 120.00319 * 359.97438 * 1 2 3 23 23 H 1.07997 * 119.74599 * 0.02713 * 10 9 7 24 24 H 1.08005 * 119.72689 * 179.97438 * 11 10 9 25 25 H 1.07997 * 119.94834 * 359.97438 * 15 14 13 26 26 H 1.08003 * 119.69516 * 180.27717 * 16 15 14 27 27 H 1.08002 * 119.95020 * 180.02562 * 17 16 15 28 28 H 1.07996 * 120.13505 * 179.97438 * 18 17 16 29 29 H 1.08002 * 120.30558 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0964 1.6965 -1.2126 5 1 1.2778 2.7465 0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0082 -1.2113 -0.0005 8 1 3.0491 -1.2341 0.2866 9 6 1.3529 -2.4053 -0.3768 10 6 1.8276 -3.6505 0.0840 11 6 1.2014 -4.8048 -0.2751 12 6 0.0791 -4.7745 -1.1045 13 8 -0.7078 -5.7543 -1.5979 14 6 -1.6982 -5.2569 -2.3707 15 6 -2.7294 -5.8662 -3.0759 16 6 -3.6201 -5.1003 -3.7983 17 6 -3.5001 -3.7203 -3.8304 18 6 -2.4830 -3.0979 -3.1367 19 6 -1.5798 -3.8609 -2.4053 20 6 -0.4056 -3.5391 -1.5704 21 6 0.2231 -2.3590 -1.2119 22 1 -0.4850 0.8400 0.0004 23 1 2.6947 -3.6888 0.7267 24 1 1.5760 -5.7517 0.0849 25 1 -2.8333 -6.9411 -3.0581 26 1 -4.4217 -5.5803 -4.3403 27 1 -4.2039 -3.1309 -4.3993 28 1 -2.3887 -2.0223 -3.1616 29 1 -0.1506 -1.4115 -1.5711 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261104690.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:39 Heat of formation + Delta-G solvation = 13.073284 kcal Electronic energy + Delta-G solvation = -15594.385362 eV Core-core repulsion = 13026.225557 eV Total energy + Delta-G solvation = -2568.159805 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.96567 -38.98164 -38.31985 -35.39227 -33.18028 -31.62980 -30.93881 -29.78608 -27.20682 -24.65243 -23.56240 -22.76296 -21.52098 -19.50555 -18.89171 -17.95217 -17.04704 -16.89544 -16.65217 -15.75768 -15.39564 -14.86226 -14.70856 -14.44618 -14.02167 -13.66486 -13.34397 -13.19340 -12.86314 -12.79096 -12.66424 -12.28881 -12.00820 -11.73616 -11.37591 -11.08777 -10.58981 -9.84666 -9.02643 -8.91591 -8.67092 -6.35864 -0.05441 0.31355 0.91418 1.18452 1.38555 1.49576 1.53069 1.94660 2.18914 2.60498 2.85562 3.57377 3.68699 3.82882 4.06894 4.23066 4.31614 4.44241 4.55070 4.72327 4.87032 4.96812 5.03962 5.22554 5.29579 5.39416 5.42901 5.53352 5.62072 5.81913 5.87789 5.96324 6.06360 6.35366 6.57725 6.83106 6.87623 8.28275 Molecular weight = 238.07amu Principal moments of inertia in cm(-1) A = 0.031876 B = 0.007313 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.201626 B = 3828.056798 C = 4627.340193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.489 4.489 8 H 0.089 0.911 9 C 0.069 3.931 10 C -0.187 4.187 11 C -0.083 4.083 12 C -0.068 4.068 13 O -0.222 6.222 14 C 0.054 3.946 15 C -0.129 4.129 16 C -0.078 4.078 17 C -0.141 4.141 18 C -0.085 4.085 19 C -0.154 4.154 20 C -0.116 4.116 21 C -0.154 4.154 22 H 0.290 0.710 23 H 0.133 0.867 24 H 0.136 0.864 25 H 0.155 0.845 26 H 0.181 0.819 27 H 0.164 0.836 28 H 0.119 0.881 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 -3.863 -5.764 8.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.518 4.518 8 H 0.107 0.893 9 C 0.066 3.934 10 C -0.206 4.206 11 C -0.101 4.101 12 C -0.113 4.113 13 O -0.129 6.129 14 C 0.007 3.993 15 C -0.147 4.147 16 C -0.096 4.096 17 C -0.158 4.158 18 C -0.103 4.103 19 C -0.155 4.155 20 C -0.117 4.117 21 C -0.174 4.174 22 H 0.100 0.900 23 H 0.150 0.850 24 H 0.154 0.846 25 H 0.173 0.827 26 H 0.198 0.802 27 H 0.182 0.818 28 H 0.137 0.863 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.316 -3.969 -5.677 8.732 hybrid contribution 0.501 0.929 0.358 1.115 sum -4.815 -3.040 -5.319 7.792 Atomic orbital electron populations 1.69905 1.09262 1.30859 1.35018 1.26839 0.95442 1.04829 0.91055 0.85189 0.78707 0.75213 0.80263 1.18439 1.19393 1.17895 1.19806 0.98764 0.91911 1.41344 0.89310 1.17898 0.91858 0.93688 0.89932 1.20920 1.03436 0.91377 1.04824 1.19551 0.92979 0.99418 0.98164 1.19570 0.98968 0.84957 1.07766 1.83744 1.36766 1.34868 1.57535 1.20257 0.91681 0.91912 0.95427 1.20407 0.93103 1.01789 0.99397 1.21392 0.98072 0.93230 0.96875 1.21392 0.98216 0.95641 1.00581 1.20776 0.94025 0.99721 0.95757 1.19852 0.98149 0.94716 1.02809 1.19645 0.96605 0.94817 1.00636 1.20635 0.99954 0.94875 1.01959 0.89981 0.84955 0.84618 0.82719 0.80178 0.81842 0.86300 0.87440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.44 10.95 21.82 0.24 -43.20 15 2 C 0.03 1.68 5.14 85.23 0.44 2.11 15 3 Si 0.99 37.46 29.60 68.60 2.03 39.49 15 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 5 H -0.27 -9.76 7.11 99.48 0.71 -9.05 15 6 H -0.25 -9.24 7.11 99.48 0.71 -8.53 15 7 C -0.49 -25.92 9.05 23.42 0.21 -25.70 15 8 H 0.09 4.39 7.91 -2.91 -0.02 4.36 15 9 C 0.07 3.75 5.58 -21.28 -0.12 3.64 15 10 C -0.19 -9.07 9.70 22.46 0.22 -8.85 15 11 C -0.08 -3.84 9.98 22.11 0.22 -3.62 15 12 C -0.07 -3.45 7.36 23.18 0.17 -3.28 15 13 O -0.22 -10.40 10.56 -17.67 -0.19 -10.59 15 14 C 0.05 2.25 7.34 22.92 0.17 2.42 15 15 C -0.13 -3.89 10.06 22.37 0.23 -3.67 15 16 C -0.08 -1.87 10.01 22.27 0.22 -1.65 15 17 C -0.14 -3.80 10.04 22.28 0.22 -3.57 15 18 C -0.08 -3.17 10.08 22.39 0.23 -2.95 15 19 C -0.15 -7.07 6.38 -20.15 -0.13 -7.20 15 20 C -0.12 -6.16 6.37 -20.16 -0.13 -6.29 15 21 C -0.15 -8.65 8.73 22.88 0.20 -8.45 15 22 H 0.29 13.79 8.30 -92.71 -0.77 13.02 15 23 H 0.13 5.66 8.06 -2.91 -0.02 5.63 15 24 H 0.14 5.24 8.06 -2.91 -0.02 5.21 15 25 H 0.16 3.65 8.06 -2.91 -0.02 3.63 15 26 H 0.18 2.47 8.06 -2.91 -0.02 2.44 15 27 H 0.16 3.07 8.06 -2.91 -0.02 3.04 15 28 H 0.12 4.39 8.06 -2.91 -0.02 4.37 15 29 H 0.11 6.23 6.16 -2.91 -0.02 6.22 15 Total: -1.00 -65.39 258.97 5.40 -59.99 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 1.17 Total: 21.36 kcal Atomic # 6 Polarization: -69.21 SS G_CDS: 2.15 Total: -67.06 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.24 Total: -43.20 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.19 Total: -10.59 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Total: -65.39 5.40 -59.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261104690.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.061 kcal (2) G-P(sol) polarization free energy of solvation -65.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds