Wall clock time and date at job start Mon Mar 30 2020 05:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 110.66697 * 2 1 4 4 H 1.08002 * 119.99721 * 120.69859 * 3 2 1 5 5 C 1.37874 * 120.00341 * 300.70542 * 3 2 1 6 6 N 1.31518 * 119.99776 * 359.97438 * 5 3 2 7 7 Si 1.86792 * 120.00196 * 179.97438 * 5 3 2 8 8 H 1.48503 * 109.47221 * 59.99982 * 7 5 3 9 9 H 1.48501 * 109.47248 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47262 * 299.99824 * 7 5 3 11 11 C 1.54707 * 110.75220 * 123.21894 * 2 1 3 12 12 C 1.51651 * 101.91218 * 143.67609 * 11 2 1 13 13 C 1.37770 * 132.16773 * 164.30012 * 12 11 2 14 14 C 1.38346 * 119.99940 * 180.32060 * 13 12 11 15 15 C 1.38284 * 119.77612 * 0.03941 * 14 13 12 16 16 C 1.38024 * 120.33424 * 359.80705 * 15 14 13 17 17 Cl 1.73598 * 119.88671 * 180.02562 * 16 15 14 18 18 C 1.38830 * 107.03454 * 344.33356 * 12 11 2 19 19 O 1.36153 * 111.26388 * 359.34816 * 18 12 11 20 20 H 1.09002 * 109.47153 * 296.77970 * 1 2 3 21 21 H 1.09001 * 109.46832 * 176.78161 * 1 2 3 22 22 H 1.09004 * 109.47261 * 56.78142 * 1 2 3 23 23 H 0.96995 * 119.99949 * 180.02562 * 6 5 3 24 24 H 1.09002 * 110.94427 * 261.83467 * 11 2 1 25 25 H 1.09005 * 110.94037 * 25.52339 * 11 2 1 26 26 H 1.07997 * 120.00455 * 0.31671 * 13 12 11 27 27 H 1.07999 * 120.11167 * 180.02562 * 14 13 12 28 28 H 1.07998 * 119.83202 * 179.82957 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0619 1.4101 0.0000 4 1 2.6992 1.7468 0.8043 5 6 1.7348 2.2703 -1.0266 6 7 0.9589 1.8602 -2.0062 7 14 2.3934 4.0182 -1.0262 8 1 3.8781 3.9878 -1.0430 9 1 1.8999 4.7335 -2.2303 10 1 1.9266 4.7229 0.1948 11 6 2.0781 -0.7926 1.2103 12 6 3.3070 -1.4562 0.6193 13 6 4.3974 -2.0668 1.1990 14 6 5.3991 -2.5939 0.4036 15 6 5.3015 -2.5046 -0.9729 16 6 4.2086 -1.8961 -1.5562 17 17 4.0977 -1.7909 -3.2854 18 6 3.1937 -1.3658 -0.7614 19 8 2.0394 -0.7403 -1.1222 20 1 -0.3633 0.4630 0.9175 21 1 -0.3633 -1.0261 -0.0577 22 1 -0.3634 0.5630 -0.8598 23 1 0.7291 2.4652 -2.7286 24 1 2.3514 -0.1211 2.0243 25 1 1.3571 -1.5374 1.5471 26 1 4.4703 -2.1340 2.2745 27 1 6.2545 -3.0734 0.8562 28 1 6.0843 -2.9133 -1.5946 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261105130.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:24 Heat of formation + Delta-G solvation = -18.351245 kcal Electronic energy + Delta-G solvation = -14921.588851 eV Core-core repulsion = 12349.633526 eV Total energy + Delta-G solvation = -2571.955325 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.14033 -36.92314 -35.64327 -33.19240 -31.65818 -29.84979 -29.12482 -25.71622 -25.25813 -21.76375 -20.98937 -20.12064 -17.30436 -16.32547 -15.49717 -14.94781 -14.55249 -14.24758 -13.85216 -13.04223 -12.71944 -12.45330 -12.13293 -11.70783 -11.42505 -11.21670 -11.00739 -10.92591 -10.85616 -10.63777 -10.45214 -10.25266 -10.09908 -9.47727 -9.18062 -8.64279 -8.14647 -7.18161 -6.13995 -4.34572 1.72601 1.98340 2.86738 3.24081 3.29674 3.31946 4.13000 4.28789 4.48067 5.19350 5.24624 5.34606 5.63348 5.80454 5.85502 6.01470 6.19133 6.44109 6.57374 6.67368 6.69520 6.82468 6.86235 6.97210 7.10613 7.35059 7.59284 7.82986 8.06964 8.37469 8.75107 9.39498 10.86677 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.023444 B = 0.010406 C = 0.009147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.070403 B = 2690.070829 C = 3060.290620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.228 3.772 3 C -0.545 4.545 4 H 0.065 0.935 5 C 0.084 3.916 6 N -0.855 5.855 7 Si 0.895 3.105 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C -0.102 4.102 12 C -0.167 4.167 13 C -0.072 4.072 14 C -0.169 4.169 15 C -0.084 4.084 16 C -0.080 4.080 17 Cl -0.079 7.079 18 C 0.164 3.836 19 O -0.274 6.274 20 H 0.051 0.949 21 H 0.023 0.977 22 H 0.095 0.905 23 H 0.266 0.734 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 -6.506 3.528 8.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.193 3.807 3 C -0.582 4.582 4 H 0.083 0.917 5 C -0.123 4.123 6 N -0.490 5.490 7 Si 0.721 3.279 8 H -0.200 1.200 9 H -0.209 1.209 10 H -0.199 1.199 11 C -0.139 4.139 12 C -0.169 4.169 13 C -0.091 4.091 14 C -0.188 4.188 15 C -0.103 4.103 16 C -0.107 4.107 17 Cl -0.051 7.051 18 C 0.114 3.886 19 O -0.186 6.186 20 H 0.069 0.931 21 H 0.042 0.958 22 H 0.114 0.886 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.385 -6.411 2.982 8.321 hybrid contribution 0.506 1.001 -0.087 1.125 sum 4.892 -5.411 2.896 7.848 Atomic orbital electron populations 1.21711 0.94377 0.99118 1.03402 1.20461 0.92459 0.89810 0.77967 1.21204 1.33041 0.94517 1.09472 0.91710 1.25027 0.93773 0.98681 0.94822 1.69913 1.33364 1.35762 1.09949 0.86620 0.79684 0.83887 0.77681 1.19961 1.20924 1.19871 1.22017 0.93078 0.98110 1.00689 1.20965 0.98336 1.03664 0.93896 1.20290 0.92595 0.96780 0.99403 1.20674 1.00193 1.05327 0.92605 1.20579 0.95793 0.98782 0.95100 1.20109 0.96508 1.10159 0.83919 1.98319 1.98256 1.97451 1.11061 1.19469 0.87689 0.89777 0.91673 1.87187 1.30558 1.59015 1.41856 0.93054 0.95832 0.88592 0.92419 0.90021 0.91334 0.86386 0.85840 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.74 37.16 0.32 -2.64 15 2 C 0.23 5.60 0.75 -90.87 -0.07 5.53 15 3 C -0.55 -14.58 8.23 -34.44 -0.28 -14.86 15 4 H 0.06 1.71 7.60 -52.49 -0.40 1.31 15 5 C 0.08 2.27 5.29 -17.82 -0.09 2.18 15 6 N -0.85 -23.85 11.10 55.43 0.62 -23.24 15 7 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 15 8 H -0.27 -6.48 7.11 56.52 0.40 -6.07 15 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 11 C -0.10 -2.11 6.17 -26.52 -0.16 -2.27 15 12 C -0.17 -3.45 6.26 -104.11 -0.65 -4.11 15 13 C -0.07 -1.23 10.03 -39.71 -0.40 -1.63 15 14 C -0.17 -2.64 10.07 -39.52 -0.40 -3.03 15 15 C -0.08 -1.42 9.79 -39.64 -0.39 -1.81 15 16 C -0.08 -1.64 6.34 -39.23 -0.25 -1.89 15 17 Cl -0.08 -1.59 28.94 -51.86 -1.50 -3.09 15 18 C 0.16 3.80 6.75 -38.93 -0.26 3.53 15 19 O -0.27 -7.16 10.21 -20.23 -0.21 -7.36 15 20 H 0.05 1.08 8.14 -51.93 -0.42 0.65 15 21 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 22 H 0.10 2.45 6.05 -51.93 -0.31 2.14 15 23 H 0.27 7.08 8.31 -40.82 -0.34 6.74 15 24 H 0.08 1.61 7.77 -51.93 -0.40 1.21 15 25 H 0.07 1.28 7.93 -51.93 -0.41 0.87 15 26 H 0.12 1.66 8.06 -52.49 -0.42 1.23 15 27 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 28 H 0.13 1.78 8.06 -52.49 -0.42 1.36 15 LS Contribution 257.64 15.07 3.88 3.88 Total: -1.00 -28.71 257.64 -7.64 -36.35 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -2.78 Total: -1.37 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -2.63 Total: -21.01 kcal Atomic # 7 Polarization: -23.85 SS G_CDS: 0.62 Total: -23.24 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.21 Total: -7.36 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -1.50 Total: -3.09 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.71 -7.64 -36.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105130.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.994 kcal (2) G-P(sol) polarization free energy of solvation -28.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds