Wall clock time and date at job start Mon Mar 30 2020 05:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 110.66697 * 2 1 4 4 H 1.08002 * 119.99721 * 120.69859 * 3 2 1 5 5 C 1.37874 * 120.00341 * 300.70542 * 3 2 1 6 6 N 1.31518 * 119.99776 * 359.97438 * 5 3 2 7 7 Si 1.86792 * 120.00196 * 179.97438 * 5 3 2 8 8 H 1.48503 * 109.47221 * 59.99982 * 7 5 3 9 9 H 1.48501 * 109.47248 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47262 * 299.99824 * 7 5 3 11 11 C 1.54707 * 110.75220 * 123.21894 * 2 1 3 12 12 C 1.51651 * 101.91218 * 143.67609 * 11 2 1 13 13 C 1.37770 * 132.16773 * 164.30012 * 12 11 2 14 14 C 1.38346 * 119.99940 * 180.32060 * 13 12 11 15 15 C 1.38284 * 119.77612 * 0.03941 * 14 13 12 16 16 C 1.38024 * 120.33424 * 359.80705 * 15 14 13 17 17 Cl 1.73598 * 119.88671 * 180.02562 * 16 15 14 18 18 C 1.38830 * 107.03454 * 344.33356 * 12 11 2 19 19 O 1.36153 * 111.26388 * 359.34816 * 18 12 11 20 20 H 1.09002 * 109.47153 * 296.77970 * 1 2 3 21 21 H 1.09001 * 109.46832 * 176.78161 * 1 2 3 22 22 H 1.09004 * 109.47261 * 56.78142 * 1 2 3 23 23 H 0.96995 * 119.99949 * 180.02562 * 6 5 3 24 24 H 1.09002 * 110.94427 * 261.83467 * 11 2 1 25 25 H 1.09005 * 110.94037 * 25.52339 * 11 2 1 26 26 H 1.07997 * 120.00455 * 0.31671 * 13 12 11 27 27 H 1.07999 * 120.11167 * 180.02562 * 14 13 12 28 28 H 1.07998 * 119.83202 * 179.82957 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0619 1.4101 0.0000 4 1 2.6992 1.7468 0.8043 5 6 1.7348 2.2703 -1.0266 6 7 0.9589 1.8602 -2.0062 7 14 2.3934 4.0182 -1.0262 8 1 3.8781 3.9878 -1.0430 9 1 1.8999 4.7335 -2.2303 10 1 1.9266 4.7229 0.1948 11 6 2.0781 -0.7926 1.2103 12 6 3.3070 -1.4562 0.6193 13 6 4.3974 -2.0668 1.1990 14 6 5.3991 -2.5939 0.4036 15 6 5.3015 -2.5046 -0.9729 16 6 4.2086 -1.8961 -1.5562 17 17 4.0977 -1.7909 -3.2854 18 6 3.1937 -1.3658 -0.7614 19 8 2.0394 -0.7403 -1.1222 20 1 -0.3633 0.4630 0.9175 21 1 -0.3633 -1.0261 -0.0577 22 1 -0.3634 0.5630 -0.8598 23 1 0.7291 2.4652 -2.7286 24 1 2.3514 -0.1211 2.0243 25 1 1.3571 -1.5374 1.5471 26 1 4.4703 -2.1340 2.2745 27 1 6.2545 -3.0734 0.8562 28 1 6.0843 -2.9133 -1.5946 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261105130.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:23 Heat of formation + Delta-G solvation = -34.270927 kcal Electronic energy + Delta-G solvation = -14922.279181 eV Core-core repulsion = 12349.633526 eV Total energy + Delta-G solvation = -2572.645654 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.73434 -38.45297 -37.15834 -35.10189 -33.34028 -31.51346 -30.58621 -27.48298 -27.08640 -23.21925 -22.46655 -21.91729 -19.13800 -17.84569 -17.04029 -16.79364 -16.20622 -15.93863 -15.32176 -14.74554 -14.22795 -14.05297 -13.69190 -13.41353 -13.27668 -12.83901 -12.77053 -12.66105 -12.52853 -12.23308 -12.05562 -11.98056 -11.66602 -11.21936 -10.99430 -10.64938 -9.57135 -8.78467 -8.13086 -6.40875 0.30588 0.53900 1.35969 1.38057 1.39838 1.46937 2.36068 2.63890 2.90180 3.25650 3.78306 3.96073 4.24087 4.37289 4.49988 4.54498 4.67989 4.87795 4.93048 4.98609 5.16939 5.28419 5.32803 5.47554 5.55859 5.63924 5.85972 5.99934 6.14406 6.56580 6.83992 7.36502 8.85232 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.023444 B = 0.010406 C = 0.009147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.070403 B = 2690.070829 C = 3060.290620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 C -0.559 4.559 4 H 0.060 0.940 5 C 0.038 3.962 6 N -0.885 5.885 7 Si 0.950 3.050 8 H -0.278 1.278 9 H -0.282 1.282 10 H -0.260 1.260 11 C -0.093 4.093 12 C -0.182 4.182 13 C -0.069 4.069 14 C -0.147 4.147 15 C -0.082 4.082 16 C -0.099 4.099 17 Cl -0.089 7.089 18 C 0.113 3.887 19 O -0.311 6.311 20 H 0.065 0.935 21 H 0.036 0.964 22 H 0.065 0.935 23 H 0.263 0.737 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.155 0.845 27 H 0.173 0.827 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.731 -7.457 5.286 11.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.176 3.824 3 C -0.596 4.596 4 H 0.078 0.922 5 C -0.166 4.166 6 N -0.521 5.521 7 Si 0.775 3.225 8 H -0.204 1.204 9 H -0.208 1.208 10 H -0.185 1.185 11 C -0.131 4.131 12 C -0.183 4.183 13 C -0.087 4.087 14 C -0.165 4.165 15 C -0.100 4.100 16 C -0.126 4.126 17 Cl -0.060 7.060 18 C 0.064 3.936 19 O -0.225 6.225 20 H 0.084 0.916 21 H 0.055 0.945 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.172 0.828 27 H 0.191 0.809 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.457 -7.371 4.755 10.892 hybrid contribution -0.022 1.174 -0.592 1.315 sum 6.436 -6.196 4.163 9.856 Atomic orbital electron populations 1.21619 0.94248 0.99470 1.02697 1.20564 0.92820 0.89476 0.79555 1.21522 1.32675 0.96198 1.09196 0.92198 1.25744 0.94121 1.02112 0.94659 1.70059 1.34781 1.36723 1.10538 0.85747 0.78600 0.80043 0.78094 1.20391 1.20754 1.18490 1.21883 0.93778 0.98207 0.99183 1.21169 0.99471 1.04788 0.92919 1.20779 0.91231 0.95095 1.01547 1.21285 1.00605 1.02840 0.91743 1.21055 0.95037 0.97508 0.96431 1.20549 0.97327 1.11096 0.83636 1.98305 1.98348 1.97564 1.11806 1.19920 0.88068 0.92106 0.93507 1.87080 1.32462 1.60318 1.42645 0.91606 0.94543 0.91630 0.92778 0.89403 0.89613 0.82751 0.80934 0.82358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.74 71.98 0.63 -5.16 15 2 C 0.21 10.51 0.75 -10.96 -0.01 10.50 15 3 C -0.56 -30.33 8.23 25.60 0.21 -30.12 15 4 H 0.06 3.19 7.60 -2.91 -0.02 3.17 15 5 C 0.04 2.06 5.29 84.65 0.45 2.51 15 6 N -0.88 -51.09 11.10 21.45 0.24 -50.85 15 7 Si 0.95 43.36 29.54 68.60 2.03 45.39 15 8 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 10 H -0.26 -11.21 7.11 99.48 0.71 -10.51 15 11 C -0.09 -3.79 6.17 30.73 0.19 -3.60 15 12 C -0.18 -7.22 6.26 -19.53 -0.12 -7.34 15 13 C -0.07 -2.05 10.03 22.18 0.22 -1.83 15 14 C -0.15 -3.81 10.07 22.31 0.22 -3.58 15 15 C -0.08 -2.50 9.79 22.23 0.22 -2.28 15 16 C -0.10 -3.99 6.34 22.50 0.14 -3.84 15 17 Cl -0.09 -3.56 28.94 -2.72 -0.08 -3.64 15 18 C 0.11 5.20 6.75 22.69 0.15 5.35 15 19 O -0.31 -16.70 10.21 -95.29 -0.97 -17.68 15 20 H 0.07 2.79 8.14 -2.39 -0.02 2.77 15 21 H 0.04 1.55 8.14 -2.39 -0.02 1.53 15 22 H 0.06 3.48 6.05 -2.38 -0.01 3.47 15 23 H 0.26 14.54 8.31 -92.71 -0.77 13.77 15 24 H 0.09 3.35 7.77 -2.39 -0.02 3.33 15 25 H 0.09 3.08 7.93 -2.38 -0.02 3.06 15 26 H 0.15 3.47 8.06 -2.91 -0.02 3.45 15 27 H 0.17 2.86 8.06 -2.91 -0.02 2.84 15 28 H 0.16 3.76 8.06 -2.91 -0.02 3.74 15 Total: -1.00 -64.23 257.64 4.69 -59.54 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.17 Total: 6.62 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 2.31 Total: -39.39 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.24 Total: -50.85 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.97 Total: -17.68 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 17 Polarization: -3.56 SS G_CDS: -0.08 Total: -3.64 kcal Total: -64.23 4.69 -59.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105130.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.274 kcal (2) G-P(sol) polarization free energy of solvation -64.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds