Wall clock time and date at job start Mon Mar 30 2020 05:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 110.80762 * 2 1 4 4 H 1.08001 * 119.99923 * 236.67897 * 3 2 1 5 5 C 1.37874 * 120.00494 * 56.67714 * 3 2 1 6 6 N 1.31517 * 119.99706 * 359.97438 * 5 3 2 7 7 Si 1.86798 * 120.00290 * 180.02562 * 5 3 2 8 8 H 1.48496 * 109.47188 * 60.00339 * 7 5 3 9 9 H 1.48501 * 109.46876 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47243 * 299.99752 * 7 5 3 11 11 C 1.54703 * 110.75400 * 236.68057 * 2 1 3 12 12 C 1.51647 * 101.93862 * 216.42947 * 11 2 1 13 13 C 1.37772 * 132.15907 * 195.48043 * 12 11 2 14 14 C 1.38343 * 119.99623 * 179.43941 * 13 12 11 15 15 C 1.38285 * 119.78238 * 359.92899 * 14 13 12 16 16 C 1.38031 * 120.33208 * 0.18122 * 15 14 13 17 17 Cl 1.73599 * 119.88921 * 180.02562 * 16 15 14 18 18 C 1.38838 * 107.04855 * 15.48388 * 12 11 2 19 19 O 1.36159 * 111.23717 * 0.86162 * 18 12 11 20 20 H 1.09003 * 109.46821 * 183.32188 * 1 2 3 21 21 H 1.08999 * 109.47387 * 303.31989 * 1 2 3 22 22 H 1.08999 * 109.47470 * 63.32338 * 1 2 3 23 23 H 0.96998 * 120.00286 * 180.02562 * 6 5 3 24 24 H 1.08998 * 110.93710 * 98.26415 * 11 2 1 25 25 H 1.09008 * 110.96425 * 334.60428 * 11 2 1 26 26 H 1.07998 * 120.00423 * 359.45732 * 13 12 11 27 27 H 1.07999 * 120.10858 * 179.97438 * 14 13 12 28 28 H 1.07994 * 119.83435 * 180.20598 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0653 1.4087 0.0000 4 1 2.7374 1.7310 -0.7816 5 6 1.6971 2.2862 0.9977 6 7 0.8782 1.8940 1.9491 7 14 2.3602 4.0326 0.9972 8 1 1.9478 4.7183 -0.2537 9 1 1.8176 4.7683 2.1675 10 1 3.8425 3.9993 1.0780 11 6 2.0782 -0.7947 -1.2088 12 6 3.3056 -1.4596 -0.6165 13 6 4.3935 -2.0759 -1.1953 14 6 5.3969 -2.5985 -0.3991 15 6 5.3041 -2.4986 0.9770 16 6 4.2141 -1.8837 1.5593 17 17 4.1096 -1.7641 3.2880 18 6 3.1939 -1.3644 0.7641 19 8 2.0394 -0.7385 1.1234 20 1 -0.3633 -1.0260 0.0596 21 1 -0.3634 0.5645 0.8587 22 1 -0.3634 0.4614 -0.9182 23 1 0.6188 2.5114 2.6508 24 1 2.3530 -0.1244 -2.0233 25 1 1.3565 -1.5388 -1.5461 26 1 4.4631 -2.1507 -2.2704 27 1 6.2503 -3.0823 -0.8508 28 1 6.0885 -2.9033 1.5992 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261105132.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:26 Heat of formation + Delta-G solvation = -18.132717 kcal Electronic energy + Delta-G solvation = -14915.010127 eV Core-core repulsion = 12343.064279 eV Total energy + Delta-G solvation = -2571.945849 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.14251 -36.92681 -35.65015 -33.22066 -31.65563 -29.82982 -29.12886 -25.71302 -25.26930 -21.76752 -20.99037 -20.12239 -17.30406 -16.32861 -15.50374 -14.96310 -14.55692 -14.24819 -13.85881 -13.04891 -12.72119 -12.45739 -12.13653 -11.71906 -11.40995 -11.21306 -11.01001 -10.93079 -10.85003 -10.64035 -10.45468 -10.23865 -10.09864 -9.48346 -9.18127 -8.64929 -8.15055 -7.18765 -6.14298 -4.35798 1.72170 1.97704 2.86042 3.23693 3.29241 3.31640 4.12420 4.28110 4.47614 5.18821 5.24352 5.34482 5.63022 5.80518 5.85398 6.01396 6.19318 6.44070 6.57819 6.67606 6.70203 6.82442 6.87305 6.97386 7.11129 7.35373 7.58892 7.85753 8.08378 8.37916 8.74213 9.38632 10.85289 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.010334 C = 0.009098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.144763 B = 2708.766041 C = 3077.019915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.227 3.773 3 C -0.544 4.544 4 H 0.065 0.935 5 C 0.084 3.916 6 N -0.856 5.856 7 Si 0.895 3.105 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.274 1.274 11 C -0.102 4.102 12 C -0.167 4.167 13 C -0.073 4.073 14 C -0.169 4.169 15 C -0.084 4.084 16 C -0.079 4.079 17 Cl -0.080 7.080 18 C 0.164 3.836 19 O -0.277 6.277 20 H 0.022 0.978 21 H 0.100 0.900 22 H 0.050 0.950 23 H 0.266 0.734 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.776 -6.498 -3.438 8.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.193 3.807 3 C -0.581 4.581 4 H 0.083 0.917 5 C -0.123 4.123 6 N -0.491 5.491 7 Si 0.722 3.278 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.199 1.199 11 C -0.139 4.139 12 C -0.168 4.168 13 C -0.091 4.091 14 C -0.188 4.188 15 C -0.103 4.103 16 C -0.107 4.107 17 Cl -0.051 7.051 18 C 0.114 3.886 19 O -0.189 6.189 20 H 0.041 0.959 21 H 0.119 0.881 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.488 -6.398 -2.899 8.336 hybrid contribution 0.505 0.987 0.077 1.112 sum 4.993 -5.411 -2.821 7.885 Atomic orbital electron populations 1.21748 0.94262 0.99153 1.03682 1.20476 0.92549 0.89739 0.77954 1.21211 1.30640 0.94287 1.11914 0.91734 1.25033 0.93785 0.98788 0.94682 1.69880 1.31628 1.35573 1.12043 0.86603 0.79666 0.83763 0.77752 1.19860 1.20907 1.19941 1.22016 0.93088 0.98094 1.00700 1.20974 0.98364 1.03594 0.93912 1.20293 0.92607 0.96780 0.99408 1.20675 1.00176 1.05314 0.92605 1.20580 0.95867 0.98713 0.95110 1.20117 0.96428 1.10190 0.83939 1.98318 1.98294 1.97363 1.11126 1.19468 0.87653 0.89831 0.91691 1.87187 1.30566 1.59153 1.41994 0.95908 0.88109 0.93127 0.92388 0.90014 0.91329 0.86379 0.85834 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.73 37.16 0.32 -2.72 15 2 C 0.23 5.60 0.76 -90.87 -0.07 5.53 15 3 C -0.54 -14.54 8.23 -34.44 -0.28 -14.83 15 4 H 0.06 1.71 7.62 -52.49 -0.40 1.31 15 5 C 0.08 2.27 5.30 -17.82 -0.09 2.17 15 6 N -0.86 -23.81 11.01 55.43 0.61 -23.20 15 7 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 15 8 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 11 C -0.10 -2.12 6.16 -26.52 -0.16 -2.28 15 12 C -0.17 -3.45 6.26 -104.10 -0.65 -4.10 15 13 C -0.07 -1.23 10.03 -39.71 -0.40 -1.63 15 14 C -0.17 -2.63 10.07 -39.53 -0.40 -3.02 15 15 C -0.08 -1.42 9.79 -39.64 -0.39 -1.81 15 16 C -0.08 -1.63 6.34 -39.23 -0.25 -1.88 15 17 Cl -0.08 -1.59 28.94 -51.86 -1.50 -3.09 15 18 C 0.16 3.78 6.75 -38.93 -0.26 3.52 15 19 O -0.28 -7.23 10.33 -20.25 -0.21 -7.44 15 20 H 0.02 0.47 8.14 -51.93 -0.42 0.05 15 21 H 0.10 2.59 5.85 -51.93 -0.30 2.29 15 22 H 0.05 1.07 8.14 -51.93 -0.42 0.65 15 23 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 24 H 0.08 1.62 7.78 -51.93 -0.40 1.21 15 25 H 0.07 1.28 7.93 -51.92 -0.41 0.87 15 26 H 0.12 1.65 8.06 -52.49 -0.42 1.23 15 27 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 28 H 0.13 1.78 8.06 -52.49 -0.42 1.36 15 LS Contribution 257.51 15.07 3.88 3.88 Total: -1.00 -28.64 257.51 -7.64 -36.29 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -2.77 Total: -1.22 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -2.63 Total: -21.04 kcal Atomic # 7 Polarization: -23.81 SS G_CDS: 0.61 Total: -23.20 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.21 Total: -7.44 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -1.50 Total: -3.09 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.64 -7.64 -36.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105132.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.153 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds