Wall clock time and date at job start Mon Mar 30 2020 05:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 110.80762 * 2 1 4 4 H 1.08001 * 119.99923 * 236.67897 * 3 2 1 5 5 C 1.37874 * 120.00494 * 56.67714 * 3 2 1 6 6 N 1.31517 * 119.99706 * 359.97438 * 5 3 2 7 7 Si 1.86798 * 120.00290 * 180.02562 * 5 3 2 8 8 H 1.48496 * 109.47188 * 60.00339 * 7 5 3 9 9 H 1.48501 * 109.46876 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47243 * 299.99752 * 7 5 3 11 11 C 1.54703 * 110.75400 * 236.68057 * 2 1 3 12 12 C 1.51647 * 101.93862 * 216.42947 * 11 2 1 13 13 C 1.37772 * 132.15907 * 195.48043 * 12 11 2 14 14 C 1.38343 * 119.99623 * 179.43941 * 13 12 11 15 15 C 1.38285 * 119.78238 * 359.92899 * 14 13 12 16 16 C 1.38031 * 120.33208 * 0.18122 * 15 14 13 17 17 Cl 1.73599 * 119.88921 * 180.02562 * 16 15 14 18 18 C 1.38838 * 107.04855 * 15.48388 * 12 11 2 19 19 O 1.36159 * 111.23717 * 0.86162 * 18 12 11 20 20 H 1.09003 * 109.46821 * 183.32188 * 1 2 3 21 21 H 1.08999 * 109.47387 * 303.31989 * 1 2 3 22 22 H 1.08999 * 109.47470 * 63.32338 * 1 2 3 23 23 H 0.96998 * 120.00286 * 180.02562 * 6 5 3 24 24 H 1.08998 * 110.93710 * 98.26415 * 11 2 1 25 25 H 1.09008 * 110.96425 * 334.60428 * 11 2 1 26 26 H 1.07998 * 120.00423 * 359.45732 * 13 12 11 27 27 H 1.07999 * 120.10858 * 179.97438 * 14 13 12 28 28 H 1.07994 * 119.83435 * 180.20598 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0653 1.4087 0.0000 4 1 2.7374 1.7310 -0.7816 5 6 1.6971 2.2862 0.9977 6 7 0.8782 1.8940 1.9491 7 14 2.3602 4.0326 0.9972 8 1 1.9478 4.7183 -0.2537 9 1 1.8176 4.7683 2.1675 10 1 3.8425 3.9993 1.0780 11 6 2.0782 -0.7947 -1.2088 12 6 3.3056 -1.4596 -0.6165 13 6 4.3935 -2.0759 -1.1953 14 6 5.3969 -2.5985 -0.3991 15 6 5.3041 -2.4986 0.9770 16 6 4.2141 -1.8837 1.5593 17 17 4.1096 -1.7641 3.2880 18 6 3.1939 -1.3644 0.7641 19 8 2.0394 -0.7385 1.1234 20 1 -0.3633 -1.0260 0.0596 21 1 -0.3634 0.5645 0.8587 22 1 -0.3634 0.4614 -0.9182 23 1 0.6188 2.5114 2.6508 24 1 2.3530 -0.1244 -2.0233 25 1 1.3565 -1.5388 -1.5461 26 1 4.4631 -2.1507 -2.2704 27 1 6.2503 -3.0823 -0.8508 28 1 6.0885 -2.9033 1.5992 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261105132.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:26 Heat of formation + Delta-G solvation = -34.005252 kcal Electronic energy + Delta-G solvation = -14915.698412 eV Core-core repulsion = 12343.064279 eV Total energy + Delta-G solvation = -2572.634134 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.73769 -38.45675 -37.16278 -35.13064 -33.33459 -31.49649 -30.58986 -27.49739 -27.08418 -23.22245 -22.46729 -21.92180 -19.13797 -17.84972 -17.04376 -16.81142 -16.20989 -15.93791 -15.32677 -14.75401 -14.23298 -14.05449 -13.69641 -13.42611 -13.26146 -12.84450 -12.77032 -12.65362 -12.52733 -12.22708 -12.04833 -11.98531 -11.66751 -11.22597 -10.99724 -10.65333 -9.57407 -8.79031 -8.13027 -6.41943 0.30294 0.53352 1.35494 1.38037 1.39863 1.47024 2.35736 2.63095 2.89532 3.25875 3.78094 3.96045 4.23996 4.37104 4.49854 4.54452 4.67700 4.88099 4.93101 4.98830 5.17044 5.29227 5.32569 5.47380 5.55121 5.63577 5.87314 6.01058 6.15618 6.56809 6.83066 7.35770 8.84181 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.010334 C = 0.009098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.144763 B = 2708.766041 C = 3077.019915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 C -0.558 4.558 4 H 0.059 0.941 5 C 0.038 3.962 6 N -0.885 5.885 7 Si 0.951 3.049 8 H -0.260 1.260 9 H -0.282 1.282 10 H -0.279 1.279 11 C -0.094 4.094 12 C -0.182 4.182 13 C -0.069 4.069 14 C -0.146 4.146 15 C -0.082 4.082 16 C -0.098 4.098 17 Cl -0.089 7.089 18 C 0.112 3.888 19 O -0.314 6.314 20 H 0.035 0.965 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.264 0.736 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.155 0.845 27 H 0.173 0.827 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.862 -7.461 -5.151 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.176 3.824 3 C -0.595 4.595 4 H 0.077 0.923 5 C -0.166 4.166 6 N -0.522 5.522 7 Si 0.776 3.224 8 H -0.185 1.185 9 H -0.207 1.207 10 H -0.204 1.204 11 C -0.131 4.131 12 C -0.183 4.183 13 C -0.087 4.087 14 C -0.164 4.164 15 C -0.100 4.100 16 C -0.126 4.126 17 Cl -0.060 7.060 18 C 0.064 3.936 19 O -0.228 6.228 20 H 0.054 0.946 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.172 0.828 27 H 0.191 0.809 28 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.583 -7.370 -4.626 10.911 hybrid contribution -0.029 1.163 0.572 1.297 sum 6.554 -6.207 -4.054 9.896 Atomic orbital electron populations 1.21652 0.94197 0.99480 1.02962 1.20573 0.92868 0.89431 0.79530 1.21519 1.30330 0.95971 1.11665 0.92279 1.25752 0.94126 1.02222 0.94515 1.70027 1.32968 1.36513 1.12658 0.85731 0.78540 0.79910 0.78211 1.18484 1.20676 1.20410 1.21879 0.93809 0.98181 0.99199 1.21172 0.99487 1.04735 0.92939 1.20781 0.91246 0.95089 1.01551 1.21287 1.00569 1.02831 0.91742 1.21058 0.95121 0.97412 0.96438 1.20555 0.97219 1.11122 0.83670 1.98305 1.98382 1.97479 1.11843 1.19916 0.88016 0.92168 0.93521 1.87077 1.32490 1.60473 1.42758 0.94648 0.91079 0.91775 0.92707 0.89423 0.89644 0.82751 0.80919 0.82333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.95 8.73 71.98 0.63 -5.32 15 2 C 0.21 10.54 0.76 -10.96 -0.01 10.53 15 3 C -0.56 -30.32 8.23 25.60 0.21 -30.11 15 4 H 0.06 3.16 7.62 -2.91 -0.02 3.14 15 5 C 0.04 2.07 5.30 84.65 0.45 2.51 15 6 N -0.89 -50.94 11.01 21.45 0.24 -50.70 15 7 Si 0.95 43.32 29.54 68.60 2.03 45.34 15 8 H -0.26 -11.19 7.11 99.48 0.71 -10.48 15 9 H -0.28 -12.57 7.11 99.48 0.71 -11.87 15 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 11 C -0.09 -3.81 6.16 30.73 0.19 -3.62 15 12 C -0.18 -7.22 6.26 -19.53 -0.12 -7.34 15 13 C -0.07 -2.05 10.03 22.18 0.22 -1.83 15 14 C -0.15 -3.78 10.07 22.31 0.22 -3.56 15 15 C -0.08 -2.49 9.79 22.23 0.22 -2.27 15 16 C -0.10 -3.96 6.34 22.50 0.14 -3.82 15 17 Cl -0.09 -3.54 28.94 -2.72 -0.08 -3.62 15 18 C 0.11 5.18 6.75 22.69 0.15 5.33 15 19 O -0.31 -16.86 10.33 -95.36 -0.99 -17.85 15 20 H 0.03 1.51 8.14 -2.39 -0.02 1.49 15 21 H 0.07 3.80 5.85 -2.39 -0.01 3.79 15 22 H 0.06 2.75 8.14 -2.39 -0.02 2.73 15 23 H 0.26 14.50 8.31 -92.71 -0.77 13.73 15 24 H 0.09 3.36 7.78 -2.39 -0.02 3.34 15 25 H 0.09 3.09 7.93 -2.38 -0.02 3.07 15 26 H 0.15 3.47 8.06 -2.91 -0.02 3.44 15 27 H 0.17 2.85 8.06 -2.91 -0.02 2.83 15 28 H 0.16 3.75 8.06 -2.91 -0.02 3.73 15 Total: -1.00 -64.10 257.51 4.67 -59.43 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 1.17 Total: 6.88 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 2.31 Total: -39.49 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.24 Total: -50.70 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.99 Total: -17.85 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 17 Polarization: -3.54 SS G_CDS: -0.08 Total: -3.62 kcal Total: -64.10 4.67 -59.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105132.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.423 kcal (2) G-P(sol) polarization free energy of solvation -64.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds