Wall clock time and date at job start Mon Mar 30 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99742 * 2 1 4 4 H 1.48500 * 109.47566 * 270.27996 * 3 2 1 5 5 H 1.48494 * 109.47296 * 30.28309 * 3 2 1 6 6 H 1.48501 * 109.46731 * 150.28165 * 3 2 1 7 7 C 1.37871 * 120.00073 * 180.28272 * 2 1 3 8 8 H 1.08000 * 120.00102 * 173.47070 * 7 2 1 9 9 C 1.50702 * 119.99948 * 353.47234 * 7 2 1 10 10 C 1.50692 * 109.22459 * 57.92548 * 9 7 2 11 11 C 1.34520 * 125.79201 * 68.12000 * 10 9 7 12 12 C 1.41373 * 106.84233 * 179.89191 * 11 10 9 13 13 C 1.34515 * 106.84119 * 0.37095 * 12 11 10 14 14 O 1.34296 * 108.42099 * 359.77402 * 13 12 11 15 15 C 1.52589 * 109.22310 * 298.52266 * 9 7 2 16 16 C 1.53113 * 109.94222 * 168.96265 * 15 9 7 17 17 S 1.81748 * 108.80690 * 63.08927 * 16 15 9 18 18 C 1.81745 * 102.22094 * 306.70775 * 17 16 15 19 19 C 1.52581 * 109.22602 * 177.33039 * 9 7 2 20 20 H 0.97007 * 120.00324 * 359.71486 * 1 2 3 21 21 H 1.08004 * 126.57571 * 0.02562 * 11 10 9 22 22 H 1.08002 * 126.58186 * 180.12635 * 12 11 10 23 23 H 1.08000 * 125.78886 * 179.75356 * 13 12 11 24 24 H 1.09000 * 109.38585 * 289.15095 * 15 9 7 25 25 H 1.08994 * 109.39063 * 48.85558 * 15 9 7 26 26 H 1.08997 * 109.61455 * 303.27839 * 16 15 9 27 27 H 1.09002 * 109.67870 * 182.93384 * 16 15 9 28 28 H 1.09000 * 109.58134 * 293.45972 * 18 17 16 29 29 H 1.09000 * 109.68468 * 173.13605 * 18 17 16 30 30 H 1.09006 * 109.39095 * 311.14042 * 19 9 7 31 31 H 1.09000 * 109.39360 * 70.94322 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4907 2.0500 -1.4000 5 1 1.4495 2.6509 0.7060 6 1 3.5496 1.4385 0.6941 7 6 2.0045 -1.1940 -0.0059 8 1 3.0792 -1.1965 -0.1123 9 6 1.2583 -2.4956 0.1361 10 6 0.2417 -2.6080 -0.9706 11 6 0.5162 -2.7633 -2.2783 12 6 -0.7247 -2.8249 -2.9528 13 6 -1.6832 -2.6952 -2.0181 14 8 -1.0921 -2.5641 -0.8194 15 6 0.5403 -2.5188 1.4823 16 6 -0.4364 -3.6969 1.5329 17 16 0.5065 -5.2455 1.4059 18 6 1.4858 -4.9772 -0.1015 19 6 2.2452 -3.6545 0.0313 20 1 -0.4851 0.8401 0.0042 21 1 1.4965 -2.8305 -2.7265 22 1 -0.8743 -2.9480 -4.0153 23 1 -2.7477 -2.6960 -2.2006 24 1 1.2739 -2.6214 2.2819 25 1 -0.0099 -1.5874 1.6151 26 1 -1.1375 -3.6270 0.7013 27 1 -0.9843 -3.6792 2.4751 28 1 0.8222 -4.9321 -0.9650 29 1 2.1955 -5.7946 -0.2286 30 1 2.8794 -3.5119 -0.8437 31 1 2.8657 -3.6836 0.9270 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261118627.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:48 Heat of formation + Delta-G solvation = 9.410831 kcal Electronic energy + Delta-G solvation = -15921.176765 eV Core-core repulsion = 13488.302095 eV Total energy + Delta-G solvation = -2432.874670 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.44372 -36.75858 -32.40086 -32.00082 -30.35884 -28.46559 -26.89972 -23.64737 -22.21695 -20.87584 -20.36607 -18.58428 -16.95085 -16.40249 -15.23008 -15.08335 -14.46477 -13.78923 -13.42006 -13.20936 -12.79888 -12.35208 -12.10194 -11.84245 -11.80381 -11.60351 -11.44523 -11.01328 -10.81181 -10.60464 -10.14403 -9.95996 -9.62697 -9.22227 -8.98635 -8.66207 -8.53923 -7.18123 -7.00663 -6.14208 -4.30201 2.52601 3.03037 3.21564 3.23950 3.29055 3.31567 3.83643 4.24843 4.29055 5.13290 5.56700 5.64084 5.83340 5.89959 6.04260 6.06384 6.10087 6.22437 6.39099 6.42671 6.57957 6.80263 6.85702 6.95255 7.05468 7.21238 7.46244 7.62238 7.71316 7.80626 8.06783 8.49550 8.70931 9.36350 10.83875 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.012373 C = 0.010188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.964129 B = 2262.405612 C = 2747.675648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.071 3.929 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.517 4.517 8 H 0.067 0.933 9 C 0.136 3.864 10 C 0.109 3.891 11 C -0.265 4.265 12 C -0.213 4.213 13 C -0.093 4.093 14 O -0.154 6.154 15 C -0.107 4.107 16 C -0.079 4.079 17 S -0.316 6.316 18 C -0.074 4.074 19 C -0.100 4.100 20 H 0.265 0.735 21 H 0.127 0.873 22 H 0.125 0.875 23 H 0.178 0.822 24 H 0.054 0.946 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.542 -5.298 -0.799 5.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.135 3.865 10 C 0.056 3.944 11 C -0.284 4.284 12 C -0.233 4.233 13 C -0.160 4.160 14 O -0.048 6.048 15 C -0.146 4.146 16 C -0.226 4.226 17 S -0.091 6.091 18 C -0.222 4.222 19 C -0.139 4.139 20 H 0.075 0.925 21 H 0.145 0.855 22 H 0.143 0.857 23 H 0.195 0.805 24 H 0.073 0.927 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.897 -6.032 0.151 6.100 hybrid contribution 0.317 2.123 -1.325 2.523 sum -0.580 -3.909 -1.175 4.122 Atomic orbital electron populations 1.69905 1.05739 1.27010 1.47120 1.25008 0.94917 0.99401 0.94079 0.86547 0.80013 0.83067 0.78238 1.20619 1.21054 1.19604 1.20931 0.93385 0.88703 1.52362 0.91489 1.16936 0.87880 0.94126 0.87579 1.23256 0.80289 0.93975 0.96850 1.21093 0.97740 1.16006 0.93559 1.21500 0.93403 1.09355 0.99024 1.23519 0.97937 1.10675 0.83880 1.84096 1.20332 1.69467 1.30953 1.21790 0.97094 0.97380 0.98309 1.23884 1.00183 0.93367 1.05186 1.86207 1.55225 1.29623 1.38031 1.23510 1.00525 1.01515 0.96693 1.21748 0.97979 0.91851 1.02279 0.92533 0.85537 0.85733 0.80513 0.92730 0.88262 0.88374 0.89770 0.89870 0.89286 0.91427 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.87 10.20 55.43 0.57 -22.31 16 2 C 0.07 1.83 5.02 -17.82 -0.09 1.74 16 3 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 7 C -0.52 -12.98 7.88 -34.44 -0.27 -13.25 16 8 H 0.07 1.66 7.74 -52.49 -0.41 1.26 16 9 C 0.14 3.07 0.42 -157.24 -0.07 3.01 16 10 C 0.11 2.50 2.31 -35.63 -0.08 2.42 16 11 C -0.26 -5.89 9.50 -39.70 -0.38 -6.27 16 12 C -0.21 -4.33 10.91 -39.71 -0.43 -4.76 16 13 C -0.09 -1.87 12.09 29.42 0.36 -1.52 16 14 O -0.15 -3.52 7.06 5.73 0.04 -3.48 16 15 C -0.11 -2.36 4.40 -26.88 -0.12 -2.48 16 16 C -0.08 -1.58 6.10 37.22 0.23 -1.35 16 17 S -0.32 -5.94 22.33 -107.50 -2.40 -8.34 16 18 C -0.07 -1.35 6.14 37.21 0.23 -1.12 16 19 C -0.10 -1.96 4.31 -26.90 -0.12 -2.08 16 20 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 21 H 0.13 2.70 8.06 -52.48 -0.42 2.28 16 22 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 23 H 0.18 2.86 8.06 -52.49 -0.42 2.44 16 24 H 0.05 1.18 8.05 -51.93 -0.42 0.76 16 25 H 0.10 2.46 6.20 -51.93 -0.32 2.14 16 26 H 0.10 2.08 4.85 -51.93 -0.25 1.83 16 27 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 28 H 0.08 1.59 6.24 -51.93 -0.32 1.27 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 31 H 0.07 1.39 8.05 -51.93 -0.42 0.97 16 LS Contribution 257.50 15.07 3.88 3.88 Total: -1.00 -26.79 257.50 -7.49 -34.27 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -3.81 Total: 6.42 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -0.74 Total: -25.66 kcal Atomic # 7 Polarization: -22.87 SS G_CDS: 0.57 Total: -22.31 kcal Atomic # 8 Polarization: -3.52 SS G_CDS: 0.04 Total: -3.48 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: -5.94 SS G_CDS: -2.40 Total: -8.34 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.79 -7.49 -34.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118627.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.684 kcal (2) G-P(sol) polarization free energy of solvation -26.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds