Wall clock time and date at job start Mon Mar 30 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99742 * 2 1 4 4 H 1.48500 * 109.47566 * 270.27996 * 3 2 1 5 5 H 1.48494 * 109.47296 * 30.28309 * 3 2 1 6 6 H 1.48501 * 109.46731 * 150.28165 * 3 2 1 7 7 C 1.37871 * 120.00073 * 180.28272 * 2 1 3 8 8 H 1.08000 * 120.00102 * 173.47070 * 7 2 1 9 9 C 1.50702 * 119.99948 * 353.47234 * 7 2 1 10 10 C 1.50692 * 109.22459 * 57.92548 * 9 7 2 11 11 C 1.34520 * 125.79201 * 68.12000 * 10 9 7 12 12 C 1.41373 * 106.84233 * 179.89191 * 11 10 9 13 13 C 1.34515 * 106.84119 * 0.37095 * 12 11 10 14 14 O 1.34296 * 108.42099 * 359.77402 * 13 12 11 15 15 C 1.52589 * 109.22310 * 298.52266 * 9 7 2 16 16 C 1.53113 * 109.94222 * 168.96265 * 15 9 7 17 17 S 1.81748 * 108.80690 * 63.08927 * 16 15 9 18 18 C 1.81745 * 102.22094 * 306.70775 * 17 16 15 19 19 C 1.52581 * 109.22602 * 177.33039 * 9 7 2 20 20 H 0.97007 * 120.00324 * 359.71486 * 1 2 3 21 21 H 1.08004 * 126.57571 * 0.02562 * 11 10 9 22 22 H 1.08002 * 126.58186 * 180.12635 * 12 11 10 23 23 H 1.08000 * 125.78886 * 179.75356 * 13 12 11 24 24 H 1.09000 * 109.38585 * 289.15095 * 15 9 7 25 25 H 1.08994 * 109.39063 * 48.85558 * 15 9 7 26 26 H 1.08997 * 109.61455 * 303.27839 * 16 15 9 27 27 H 1.09002 * 109.67870 * 182.93384 * 16 15 9 28 28 H 1.09000 * 109.58134 * 293.45972 * 18 17 16 29 29 H 1.09000 * 109.68468 * 173.13605 * 18 17 16 30 30 H 1.09006 * 109.39095 * 311.14042 * 19 9 7 31 31 H 1.09000 * 109.39360 * 70.94322 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4907 2.0500 -1.4000 5 1 1.4495 2.6509 0.7060 6 1 3.5496 1.4385 0.6941 7 6 2.0045 -1.1940 -0.0059 8 1 3.0792 -1.1965 -0.1123 9 6 1.2583 -2.4956 0.1361 10 6 0.2417 -2.6080 -0.9706 11 6 0.5162 -2.7633 -2.2783 12 6 -0.7247 -2.8249 -2.9528 13 6 -1.6832 -2.6952 -2.0181 14 8 -1.0921 -2.5641 -0.8194 15 6 0.5403 -2.5188 1.4823 16 6 -0.4364 -3.6969 1.5329 17 16 0.5065 -5.2455 1.4059 18 6 1.4858 -4.9772 -0.1015 19 6 2.2452 -3.6545 0.0313 20 1 -0.4851 0.8401 0.0042 21 1 1.4965 -2.8305 -2.7265 22 1 -0.8743 -2.9480 -4.0153 23 1 -2.7477 -2.6960 -2.2006 24 1 1.2739 -2.6214 2.2819 25 1 -0.0099 -1.5874 1.6151 26 1 -1.1375 -3.6270 0.7013 27 1 -0.9843 -3.6792 2.4751 28 1 0.8222 -4.9321 -0.9650 29 1 2.1955 -5.7946 -0.2286 30 1 2.8794 -3.5119 -0.8437 31 1 2.8657 -3.6836 0.9270 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261118627.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:48 Heat of formation + Delta-G solvation = -3.506056 kcal Electronic energy + Delta-G solvation = -15921.736883 eV Core-core repulsion = 13488.302095 eV Total energy + Delta-G solvation = -2433.434788 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.10253 -38.45103 -34.26686 -33.65538 -31.96784 -30.11945 -28.63286 -25.44439 -23.82262 -22.53950 -21.99065 -20.28256 -18.75795 -18.01238 -16.91703 -16.78676 -16.20970 -15.40326 -15.10589 -14.83016 -14.39518 -14.00603 -13.75393 -13.57583 -13.40008 -13.22917 -13.04075 -12.82653 -12.54556 -12.29518 -11.89458 -11.68638 -11.39126 -10.89952 -10.71346 -10.36283 -10.28175 -8.84014 -8.55563 -8.04011 -6.27229 1.02322 1.36455 1.42342 1.45753 1.51826 1.70322 2.16228 2.42038 2.65250 3.21481 4.05337 4.13461 4.26361 4.32378 4.44241 4.52430 4.55377 4.60454 4.76600 4.87468 4.98160 5.19996 5.21082 5.28551 5.38244 5.55240 5.61146 5.88198 5.95057 6.10446 6.21155 6.75794 6.85539 7.40915 8.88740 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.012373 C = 0.010188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.964129 B = 2262.405612 C = 2747.675648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.031 3.969 3 Si 0.945 3.055 4 H -0.284 1.284 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.126 3.874 10 C 0.095 3.905 11 C -0.281 4.281 12 C -0.219 4.219 13 C -0.097 4.097 14 O -0.172 6.172 15 C -0.099 4.099 16 C -0.077 4.077 17 S -0.300 6.300 18 C -0.069 4.069 19 C -0.095 4.095 20 H 0.260 0.740 21 H 0.128 0.872 22 H 0.153 0.847 23 H 0.215 0.785 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 -6.113 -1.221 6.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.172 4.172 3 Si 0.772 3.228 4 H -0.210 1.210 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.081 0.919 9 C 0.125 3.875 10 C 0.043 3.957 11 C -0.300 4.300 12 C -0.239 4.239 13 C -0.164 4.164 14 O -0.067 6.067 15 C -0.138 4.138 16 C -0.225 4.225 17 S -0.074 6.074 18 C -0.217 4.217 19 C -0.134 4.134 20 H 0.069 0.931 21 H 0.146 0.854 22 H 0.171 0.829 23 H 0.231 0.769 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.089 0.911 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.766 -6.856 -0.269 6.904 hybrid contribution 0.275 2.347 -1.221 2.660 sum -0.491 -4.509 -1.490 4.774 Atomic orbital electron populations 1.70028 1.06632 1.27008 1.48268 1.25586 0.95528 1.01835 0.94205 0.85751 0.79189 0.80139 0.77767 1.21032 1.21193 1.18982 1.21245 0.93468 0.90124 1.51789 0.91871 1.17011 0.88455 0.94252 0.87765 1.23175 0.80531 0.94966 0.97055 1.21329 0.98690 1.16220 0.93761 1.21836 0.92483 1.09001 1.00543 1.24321 0.99736 1.09351 0.82992 1.84083 1.20440 1.69860 1.32365 1.21615 0.97105 0.96976 0.98139 1.23740 0.99768 0.93472 1.05507 1.86137 1.54980 1.28044 1.38263 1.23499 1.00641 1.01582 0.95978 1.21668 0.97471 0.91689 1.02559 0.93098 0.85415 0.82906 0.76889 0.92896 0.91291 0.89437 0.88458 0.90792 0.86347 0.91121 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.33 10.20 21.44 0.22 -47.11 16 2 C 0.03 1.60 5.02 84.65 0.43 2.02 16 3 Si 0.95 41.66 29.54 68.60 2.03 43.69 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.53 -26.61 7.88 25.60 0.20 -26.41 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.13 5.67 0.42 -53.95 -0.02 5.65 16 10 C 0.09 4.31 2.31 24.83 0.06 4.37 16 11 C -0.28 -12.24 9.50 22.19 0.21 -12.03 16 12 C -0.22 -8.49 10.91 22.19 0.24 -8.25 16 13 C -0.10 -3.77 12.09 66.97 0.81 -2.96 16 14 O -0.17 -7.78 7.06 -2.43 -0.02 -7.80 16 15 C -0.10 -4.39 4.40 30.50 0.13 -4.26 16 16 C -0.08 -3.03 6.10 72.02 0.44 -2.60 16 17 S -0.30 -10.68 22.33 -56.49 -1.26 -11.94 16 18 C -0.07 -2.36 6.14 72.01 0.44 -1.92 16 19 C -0.10 -3.63 4.31 30.49 0.13 -3.49 16 20 H 0.26 13.62 8.31 -92.70 -0.77 12.85 16 21 H 0.13 5.38 8.06 -2.91 -0.02 5.36 16 22 H 0.15 4.88 8.06 -2.91 -0.02 4.86 16 23 H 0.21 6.30 8.06 -2.91 -0.02 6.28 16 24 H 0.05 2.29 8.05 -2.39 -0.02 2.27 16 25 H 0.07 3.49 6.20 -2.39 -0.01 3.47 16 26 H 0.09 3.67 4.85 -2.39 -0.01 3.66 16 27 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 28 H 0.07 2.70 6.24 -2.39 -0.01 2.69 16 29 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 30 H 0.07 2.62 8.07 -2.38 -0.02 2.60 16 31 H 0.07 2.79 8.05 -2.39 -0.02 2.77 16 Total: -1.00 -55.85 257.50 5.16 -50.69 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 1.12 Total: 22.34 kcal Atomic # 6 Polarization: -52.94 SS G_CDS: 3.07 Total: -49.87 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.22 Total: -47.11 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.02 Total: -7.80 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: -10.68 SS G_CDS: -1.26 Total: -11.94 kcal Total: -55.85 5.16 -50.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118627.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.188 kcal (2) G-P(sol) polarization free energy of solvation -55.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds