Wall clock time and date at job start Mon Mar 30 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48499 * 109.47040 * 269.99887 * 3 2 1 5 5 H 1.48501 * 109.47301 * 29.99502 * 3 2 1 6 6 H 1.48493 * 109.47419 * 149.99623 * 3 2 1 7 7 C 1.37879 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99991 * 186.33024 * 7 2 1 9 9 C 1.50701 * 119.99971 * 6.32318 * 7 2 1 10 10 C 1.50697 * 109.61933 * 301.04934 * 9 7 2 11 11 C 1.33391 * 125.20221 * 305.15976 * 10 9 7 12 12 C 1.38425 * 114.91974 * 179.85829 * 11 10 9 13 13 C 1.33388 * 114.92092 * 0.42717 * 12 11 10 14 14 S 1.75880 * 125.20442 * 125.45731 * 10 9 7 15 15 C 1.53181 * 109.53964 * 61.26877 * 9 7 2 16 16 C 1.53092 * 109.16165 * 62.88807 * 15 9 7 17 17 O 1.42904 * 109.42006 * 57.60608 * 16 15 9 18 18 C 1.42899 * 114.09399 * 298.84296 * 17 16 15 19 19 C 1.53090 * 109.41777 * 61.15691 * 18 17 16 20 20 H 0.97002 * 120.00182 * 0.02562 * 1 2 3 21 21 H 1.08001 * 122.53909 * 0.02562 * 11 10 9 22 22 H 1.08004 * 122.53867 * 180.19534 * 12 11 10 23 23 H 1.07997 * 125.20242 * 179.74811 * 13 12 11 24 24 H 1.08996 * 109.52254 * 302.98098 * 15 9 7 25 25 H 1.09004 * 109.52320 * 182.78752 * 15 9 7 26 26 H 1.09001 * 109.48406 * 177.59088 * 16 15 9 27 27 H 1.09005 * 109.48033 * 297.61099 * 16 15 9 28 28 H 1.09009 * 109.48039 * 181.13824 * 18 17 16 29 29 H 1.09003 * 109.48661 * 301.17194 * 18 17 16 30 30 H 1.08999 * 109.52474 * 62.29335 * 19 18 17 31 31 H 1.08995 * 109.52671 * 182.48008 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0797 -1.1968 0.1037 9 6 1.2580 -2.4953 -0.1426 10 6 0.2592 -2.6314 0.9776 11 6 0.5467 -2.5537 2.2778 12 6 -0.5372 -2.7071 3.1250 13 6 -1.7035 -2.9183 2.5130 14 16 -1.4626 -2.9245 0.7707 15 6 0.5258 -2.5205 -1.4879 16 6 1.5538 -2.4610 -2.6207 17 8 2.4625 -3.5569 -2.4958 18 6 3.2098 -3.5590 -1.2778 19 6 2.2484 -3.6626 -0.0909 20 1 -0.4850 0.8400 -0.0004 21 1 1.5488 -2.3814 2.6419 22 1 -0.4450 -2.6631 4.2002 23 1 -2.6506 -3.0636 3.0111 24 1 -0.1412 -1.6611 -1.5557 25 1 -0.0538 -3.4400 -1.5699 26 1 1.0409 -2.5218 -3.5806 27 1 2.1054 -1.5227 -2.5621 28 1 3.8899 -4.4108 -1.2701 29 1 3.7833 -2.6351 -1.2014 30 1 1.7036 -4.6051 -0.1447 31 1 2.8133 -3.6201 0.8403 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261139117.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:48 Heat of formation + Delta-G solvation = -20.996504 kcal Electronic energy + Delta-G solvation = -15622.143170 eV Core-core repulsion = 13187.949939 eV Total energy + Delta-G solvation = -2434.193231 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.73379 -36.54549 -34.09222 -31.55064 -30.03407 -27.95014 -25.46564 -23.85347 -22.62500 -21.80949 -19.07083 -17.96676 -16.58094 -15.77850 -15.03009 -14.87105 -14.58753 -14.07305 -13.81375 -13.13242 -12.85732 -12.04065 -11.76259 -11.63413 -11.40366 -11.14309 -11.00971 -10.89359 -10.71687 -10.36182 -10.15569 -9.87548 -9.60117 -9.29998 -9.02959 -8.66058 -8.35092 -7.36910 -7.25100 -6.06306 -4.19735 2.26808 2.86642 3.22439 3.26553 3.31828 3.33918 3.97547 4.33890 4.75059 5.17977 5.84249 5.91023 5.93385 6.05151 6.13375 6.28912 6.31194 6.42590 6.50402 6.65919 6.76800 6.83556 6.96387 7.01866 7.14438 7.29868 7.48403 7.63188 7.73763 7.85717 8.12059 8.21142 8.77937 9.44948 10.92369 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.018695 B = 0.014605 C = 0.010208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.363832 B = 1916.747168 C = 2742.296174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.074 3.926 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.062 0.938 9 C 0.130 3.870 10 C -0.034 4.034 11 C -0.190 4.190 12 C -0.119 4.119 13 C -0.270 4.270 14 S 0.070 5.930 15 C -0.144 4.144 16 C 0.075 3.925 17 O -0.400 6.400 18 C 0.073 3.927 19 C -0.132 4.132 20 H 0.262 0.738 21 H 0.124 0.876 22 H 0.116 0.884 23 H 0.140 0.860 24 H 0.097 0.903 25 H 0.033 0.967 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 -4.451 0.380 4.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.131 4.131 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.080 0.920 9 C 0.127 3.873 10 C -0.152 4.152 11 C -0.217 4.217 12 C -0.152 4.152 13 C -0.405 4.405 14 S 0.335 5.665 15 C -0.182 4.182 16 C -0.001 4.001 17 O -0.319 6.319 18 C -0.004 4.004 19 C -0.170 4.170 20 H 0.073 0.927 21 H 0.141 0.859 22 H 0.134 0.866 23 H 0.158 0.842 24 H 0.115 0.885 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.811 -4.658 -0.962 4.825 hybrid contribution 1.099 1.632 1.744 2.629 sum 0.288 -3.025 0.782 3.138 Atomic orbital electron populations 1.69964 1.05608 1.26683 1.47731 1.24936 0.94827 0.98927 0.94374 0.86667 0.80001 0.83708 0.78138 1.20604 1.21298 1.19924 1.20908 0.93012 0.88957 1.52102 0.91963 1.16898 0.89112 0.93522 0.87779 1.25040 0.94240 0.97404 0.98511 1.19682 0.99344 1.10144 0.92522 1.19949 0.92564 1.03083 0.99567 1.25170 1.01243 1.16445 0.97685 1.83768 1.07802 1.70803 1.04151 1.22218 0.98522 1.01238 0.96233 1.22442 0.90861 0.89454 0.97354 1.87724 1.56091 1.49219 1.38914 1.22408 0.93115 1.00614 0.84271 1.22149 0.98372 0.98366 0.98152 0.92735 0.85859 0.86647 0.84181 0.88515 0.94868 0.91325 0.92299 0.91055 0.92617 0.93441 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.49 10.55 55.43 0.59 -21.91 16 2 C 0.07 1.87 5.11 -17.82 -0.09 1.78 16 3 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.51 -12.52 5.99 -34.44 -0.21 -12.73 16 8 H 0.06 1.53 6.89 -52.49 -0.36 1.17 16 9 C 0.13 2.94 0.41 -156.63 -0.06 2.87 16 10 C -0.03 -0.77 3.66 -36.00 -0.13 -0.90 16 11 C -0.19 -4.21 9.56 -41.21 -0.39 -4.60 16 12 C -0.12 -2.41 10.18 -41.21 -0.42 -2.83 16 13 C -0.27 -5.34 11.23 29.04 0.33 -5.01 16 14 S 0.07 1.50 21.83 -107.50 -2.35 -0.85 16 15 C -0.14 -3.20 3.89 -26.59 -0.10 -3.30 16 16 C 0.08 1.55 6.62 37.20 0.25 1.79 16 17 O -0.40 -8.17 10.77 -35.23 -0.38 -8.55 16 18 C 0.07 1.37 6.61 37.20 0.25 1.62 16 19 C -0.13 -2.66 4.77 -26.59 -0.13 -2.79 16 20 H 0.26 6.73 8.31 -40.82 -0.34 6.40 16 21 H 0.12 2.70 8.06 -52.49 -0.42 2.28 16 22 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 23 H 0.14 2.36 8.06 -52.49 -0.42 1.94 16 24 H 0.10 2.36 6.37 -51.93 -0.33 2.03 16 25 H 0.03 0.72 7.71 -51.93 -0.40 0.32 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.06 1.27 7.38 -51.93 -0.38 0.89 16 28 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 29 H 0.06 1.08 6.85 -51.93 -0.36 0.72 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 LS Contribution 262.27 15.07 3.95 3.95 Total: -1.00 -26.28 262.27 -7.85 -34.14 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -3.93 Total: 2.21 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -0.72 Total: -24.10 kcal Atomic # 7 Polarization: -22.49 SS G_CDS: 0.59 Total: -21.91 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.38 Total: -8.55 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.35 Total: -0.85 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.28 -7.85 -34.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139117.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.140 kcal (2) G-P(sol) polarization free energy of solvation -26.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds