Wall clock time and date at job start Mon Mar 30 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48499 * 109.47040 * 269.99887 * 3 2 1 5 5 H 1.48501 * 109.47301 * 29.99502 * 3 2 1 6 6 H 1.48493 * 109.47419 * 149.99623 * 3 2 1 7 7 C 1.37879 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99991 * 186.33024 * 7 2 1 9 9 C 1.50701 * 119.99971 * 6.32318 * 7 2 1 10 10 C 1.50697 * 109.61933 * 301.04934 * 9 7 2 11 11 C 1.33391 * 125.20221 * 305.15976 * 10 9 7 12 12 C 1.38425 * 114.91974 * 179.85829 * 11 10 9 13 13 C 1.33388 * 114.92092 * 0.42717 * 12 11 10 14 14 S 1.75880 * 125.20442 * 125.45731 * 10 9 7 15 15 C 1.53181 * 109.53964 * 61.26877 * 9 7 2 16 16 C 1.53092 * 109.16165 * 62.88807 * 15 9 7 17 17 O 1.42904 * 109.42006 * 57.60608 * 16 15 9 18 18 C 1.42899 * 114.09399 * 298.84296 * 17 16 15 19 19 C 1.53090 * 109.41777 * 61.15691 * 18 17 16 20 20 H 0.97002 * 120.00182 * 0.02562 * 1 2 3 21 21 H 1.08001 * 122.53909 * 0.02562 * 11 10 9 22 22 H 1.08004 * 122.53867 * 180.19534 * 12 11 10 23 23 H 1.07997 * 125.20242 * 179.74811 * 13 12 11 24 24 H 1.08996 * 109.52254 * 302.98098 * 15 9 7 25 25 H 1.09004 * 109.52320 * 182.78752 * 15 9 7 26 26 H 1.09001 * 109.48406 * 177.59088 * 16 15 9 27 27 H 1.09005 * 109.48033 * 297.61099 * 16 15 9 28 28 H 1.09009 * 109.48039 * 181.13824 * 18 17 16 29 29 H 1.09003 * 109.48661 * 301.17194 * 18 17 16 30 30 H 1.08999 * 109.52474 * 62.29335 * 19 18 17 31 31 H 1.08995 * 109.52671 * 182.48008 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0797 -1.1968 0.1037 9 6 1.2580 -2.4953 -0.1426 10 6 0.2592 -2.6314 0.9776 11 6 0.5467 -2.5537 2.2778 12 6 -0.5372 -2.7071 3.1250 13 6 -1.7035 -2.9183 2.5130 14 16 -1.4626 -2.9245 0.7707 15 6 0.5258 -2.5205 -1.4879 16 6 1.5538 -2.4610 -2.6207 17 8 2.4625 -3.5569 -2.4958 18 6 3.2098 -3.5590 -1.2778 19 6 2.2484 -3.6626 -0.0909 20 1 -0.4850 0.8400 -0.0004 21 1 1.5488 -2.3814 2.6419 22 1 -0.4450 -2.6631 4.2002 23 1 -2.6506 -3.0636 3.0111 24 1 -0.1412 -1.6611 -1.5557 25 1 -0.0538 -3.4400 -1.5699 26 1 1.0409 -2.5218 -3.5806 27 1 2.1054 -1.5227 -2.5621 28 1 3.8899 -4.4108 -1.2701 29 1 3.7833 -2.6351 -1.2014 30 1 1.7036 -4.6051 -0.1447 31 1 2.8133 -3.6201 0.8403 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261139117.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:48 Heat of formation + Delta-G solvation = -34.489212 kcal Electronic energy + Delta-G solvation = -15622.728258 eV Core-core repulsion = 13187.949939 eV Total energy + Delta-G solvation = -2434.778319 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.39000 -38.16799 -35.81084 -33.37659 -31.67986 -29.58021 -27.32504 -25.53039 -24.25173 -23.42978 -20.82166 -19.61646 -18.28034 -17.50656 -16.73010 -16.61006 -16.27915 -15.69799 -15.43821 -14.87213 -14.54397 -13.72259 -13.42948 -13.31671 -13.01933 -12.80983 -12.79082 -12.57387 -12.51186 -12.06704 -11.94731 -11.54002 -11.29011 -10.97607 -10.77980 -10.49073 -10.07203 -9.03483 -8.92751 -7.95902 -6.13471 0.63698 1.24506 1.41741 1.46153 1.51194 1.61929 2.31346 2.46976 3.18876 3.26424 4.22651 4.35036 4.43470 4.44444 4.51604 4.67351 4.69220 4.83905 4.94349 5.01972 5.15200 5.20402 5.31542 5.31956 5.46413 5.62785 5.66339 5.90270 5.98566 6.11717 6.35942 6.50627 6.87116 7.51932 8.99165 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.018695 B = 0.014605 C = 0.010208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.363832 B = 1916.747168 C = 2742.296174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.038 3.962 3 Si 0.933 3.067 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.120 3.880 10 C -0.058 4.058 11 C -0.200 4.200 12 C -0.130 4.130 13 C -0.262 4.262 14 S 0.057 5.943 15 C -0.136 4.136 16 C 0.079 3.921 17 O -0.403 6.403 18 C 0.072 3.928 19 C -0.128 4.128 20 H 0.257 0.743 21 H 0.119 0.881 22 H 0.145 0.855 23 H 0.172 0.828 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.105 0.895 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.546 -5.022 0.792 5.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.164 4.164 3 Si 0.761 3.239 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.118 3.882 10 C -0.176 4.176 11 C -0.228 4.228 12 C -0.161 4.161 13 C -0.396 4.396 14 S 0.321 5.679 15 C -0.175 4.175 16 C 0.002 3.998 17 O -0.322 6.322 18 C -0.005 4.005 19 C -0.167 4.167 20 H 0.066 0.934 21 H 0.137 0.863 22 H 0.163 0.837 23 H 0.190 0.810 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.108 0.892 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.589 -5.235 -0.553 5.297 hybrid contribution 1.027 1.774 1.654 2.634 sum 0.438 -3.461 1.101 3.658 Atomic orbital electron populations 1.70079 1.06334 1.26505 1.48952 1.25415 0.95347 1.00965 0.94677 0.85947 0.78958 0.81137 0.77893 1.20443 1.22053 1.19799 1.21070 0.92821 0.89950 1.51128 0.92533 1.16967 0.89662 0.93621 0.87964 1.25083 0.95077 0.98633 0.98811 1.19888 0.99927 1.10189 0.92835 1.20214 0.91980 1.02919 1.00981 1.25550 1.02516 1.15026 0.96542 1.83744 1.07109 1.71040 1.06033 1.22095 0.98502 1.00039 0.96863 1.22395 0.90507 0.89030 0.97829 1.87727 1.56021 1.48896 1.39559 1.22543 0.92947 1.01779 0.83218 1.22112 0.98157 0.97427 0.98990 0.93394 0.86299 0.83746 0.81044 0.90918 0.94835 0.89189 0.93725 0.87699 0.93344 0.93235 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.10 10.55 21.45 0.23 -45.88 16 2 C 0.04 1.93 5.11 84.65 0.43 2.36 16 3 Si 0.93 41.29 29.54 68.60 2.03 43.31 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.51 -24.90 5.99 25.60 0.15 -24.75 16 8 H 0.06 2.76 6.89 -2.91 -0.02 2.74 16 9 C 0.12 5.40 0.41 -53.56 -0.02 5.38 16 10 C -0.06 -2.61 3.66 24.59 0.09 -2.52 16 11 C -0.20 -8.72 9.56 21.22 0.20 -8.52 16 12 C -0.13 -4.96 10.18 21.22 0.22 -4.74 16 13 C -0.26 -9.74 11.23 66.72 0.75 -8.99 16 14 S 0.06 2.36 21.83 -56.49 -1.23 1.13 16 15 C -0.14 -6.03 3.89 30.69 0.12 -5.91 16 16 C 0.08 3.17 6.62 72.01 0.48 3.65 16 17 O -0.40 -15.75 10.77 -148.98 -1.60 -17.36 16 18 C 0.07 2.57 6.61 72.01 0.48 3.05 16 19 C -0.13 -5.03 4.77 30.68 0.15 -4.88 16 20 H 0.26 13.28 8.31 -92.71 -0.77 12.51 16 21 H 0.12 5.16 8.06 -2.91 -0.02 5.13 16 22 H 0.14 4.60 8.06 -2.91 -0.02 4.57 16 23 H 0.17 5.20 8.06 -2.91 -0.02 5.17 16 24 H 0.07 3.58 6.37 -2.39 -0.02 3.57 16 25 H 0.03 1.44 7.71 -2.38 -0.02 1.42 16 26 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 27 H 0.04 1.91 7.38 -2.38 -0.02 1.90 16 28 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 29 H 0.05 1.82 6.85 -2.39 -0.02 1.80 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 31 H 0.07 2.49 8.13 -2.39 -0.02 2.47 16 Total: -1.00 -54.08 262.27 3.57 -50.50 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.11 Total: 14.16 kcal Atomic # 6 Polarization: -48.91 SS G_CDS: 3.04 Total: -45.87 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.23 Total: -45.88 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -1.60 Total: -17.36 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -1.23 Total: 1.13 kcal Total: -54.08 3.57 -50.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139117.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.015 kcal (2) G-P(sol) polarization free energy of solvation -54.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds