Wall clock time and date at job start Mon Mar 30 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00009 * 2 1 4 4 H 1.48500 * 109.47037 * 245.43819 * 3 2 1 5 5 H 1.48504 * 109.47339 * 5.43778 * 3 2 1 6 6 H 1.48498 * 109.47616 * 125.43697 * 3 2 1 7 7 C 1.37879 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99787 * 321.40987 * 7 2 1 9 9 C 1.50698 * 120.00002 * 141.41256 * 7 2 1 10 10 C 1.50706 * 109.51865 * 325.73801 * 9 7 2 11 11 C 1.33397 * 125.20115 * 307.85222 * 10 9 7 12 12 C 1.38423 * 114.91782 * 179.97438 * 11 10 9 13 13 C 1.33394 * 114.92076 * 0.02562 * 12 11 10 14 14 S 1.75876 * 109.59588 * 359.97438 * 13 12 11 15 15 C 1.53174 * 109.57630 * 85.89250 * 9 7 2 16 16 C 1.53174 * 109.03524 * 62.95864 * 15 9 7 17 17 C 1.53089 * 109.16617 * 56.98032 * 16 15 9 18 18 O 1.42904 * 109.41505 * 302.39157 * 17 16 15 19 19 C 1.42910 * 114.09343 * 61.15762 * 18 17 16 20 20 H 0.97002 * 120.00427 * 0.02562 * 1 2 3 21 21 H 1.07998 * 122.53655 * 359.97438 * 11 10 9 22 22 H 1.08001 * 122.53728 * 179.73343 * 12 11 10 23 23 H 1.08005 * 125.19756 * 179.97438 * 13 12 11 24 24 H 1.09004 * 109.54399 * 182.82517 * 15 9 7 25 25 H 1.09001 * 109.54623 * 303.09143 * 15 9 7 26 26 H 1.08995 * 109.52309 * 297.07341 * 16 15 9 27 27 H 1.09001 * 109.57388 * 176.91779 * 16 15 9 28 28 H 1.08994 * 109.48598 * 182.40867 * 17 16 15 29 29 H 1.09004 * 109.49066 * 62.37850 * 17 16 15 30 30 H 1.09001 * 109.47640 * 178.85987 * 19 18 17 31 31 H 1.08995 * 109.49179 * 58.83304 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.0006 1.7554 -1.2734 5 1 1.2896 2.7433 0.1327 6 1 3.1997 1.6406 1.1407 7 6 2.0045 -1.1941 0.0005 8 1 1.6413 -2.0270 0.5843 9 6 3.2647 -1.3369 -0.8134 10 6 3.1429 -0.5246 -2.0769 11 6 2.1297 -0.5952 -2.9417 12 6 2.2349 0.2493 -4.0335 13 6 3.3337 1.0053 -4.0555 14 16 4.3146 0.6617 -2.6367 15 6 4.4617 -0.8385 0.0021 16 6 4.6222 -1.7206 1.2440 17 6 4.7837 -3.1790 0.8071 18 8 3.6516 -3.5694 0.0274 19 6 3.4787 -2.8101 -1.1709 20 1 -0.4851 0.8400 -0.0004 21 1 1.2909 -1.2607 -2.8007 22 1 1.4864 0.2896 -4.8110 23 1 3.5829 1.7191 -4.8268 24 1 5.3654 -0.8952 -0.6047 25 1 4.2903 0.1937 0.3077 26 1 3.7388 -1.6252 1.8752 27 1 5.5045 -1.4079 1.8025 28 1 4.8555 -3.8166 1.6882 29 1 5.6895 -3.2814 0.2095 30 1 2.6103 -3.1820 -1.7147 31 1 4.3672 -2.9075 -1.7946 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261150861.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:46 Heat of formation + Delta-G solvation = -5.245855 kcal Electronic energy + Delta-G solvation = -15732.836521 eV Core-core repulsion = 13299.326289 eV Total energy + Delta-G solvation = -2433.510232 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.94079 -36.87943 -33.96457 -31.99362 -30.98703 -27.49447 -25.14467 -24.34837 -23.48744 -21.61377 -19.19504 -18.24657 -16.99495 -15.83804 -15.27225 -15.13787 -14.74101 -14.36776 -13.78057 -13.29525 -12.79542 -12.53054 -12.43665 -12.05886 -11.77076 -11.48349 -11.27827 -10.72164 -10.48350 -10.29892 -10.24240 -10.02132 -9.81993 -9.63132 -9.30174 -8.66026 -8.13549 -7.65595 -7.24447 -6.26354 -3.98102 1.80562 2.39664 2.76623 3.41031 3.44002 3.53900 3.64162 4.52147 4.66838 5.00503 5.54646 5.63908 5.67930 5.73151 5.89633 6.05725 6.10034 6.17563 6.23086 6.37566 6.41141 6.48000 6.65222 6.81509 6.96316 7.04944 7.12671 7.31131 7.46226 7.74678 8.00212 8.43993 9.02504 9.54496 10.82916 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.022069 B = 0.014674 C = 0.012056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.425600 B = 1907.622424 C = 2321.950746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.119 3.881 3 Si 0.767 3.233 4 H -0.204 1.204 5 H -0.298 1.298 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.083 0.917 9 C 0.088 3.912 10 C -0.107 4.107 11 C -0.142 4.142 12 C -0.123 4.123 13 C -0.249 4.249 14 S 0.052 5.948 15 C -0.124 4.124 16 C -0.141 4.141 17 C 0.066 3.934 18 O -0.374 6.374 19 C 0.094 3.906 20 H 0.264 0.736 21 H 0.144 0.856 22 H 0.128 0.872 23 H 0.149 0.851 24 H 0.035 0.965 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.035 0.965 30 H 0.089 0.911 31 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.335 -0.793 -4.543 9.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.089 4.089 3 Si 0.593 3.407 4 H -0.128 1.128 5 H -0.225 1.225 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.101 0.899 9 C 0.084 3.916 10 C -0.225 4.225 11 C -0.170 4.170 12 C -0.154 4.154 13 C -0.383 4.383 14 S 0.315 5.685 15 C -0.163 4.163 16 C -0.178 4.178 17 C -0.011 4.011 18 O -0.292 6.292 19 C 0.017 3.983 20 H 0.073 0.927 21 H 0.161 0.839 22 H 0.146 0.854 23 H 0.167 0.833 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 9.381 -0.286 -3.996 10.201 hybrid contribution -0.867 1.122 -0.416 1.478 sum 8.515 0.836 -4.412 9.626 Atomic orbital electron populations 1.70298 1.07175 1.27590 1.42745 1.24681 0.93493 0.98509 0.92226 0.88842 0.82667 0.85724 0.83454 1.12801 1.22467 1.19908 1.20330 1.05792 0.99897 1.30930 0.89879 1.17697 0.95812 0.90392 0.87690 1.25076 0.96319 1.00503 1.00557 1.20048 1.00071 1.02557 0.94287 1.20161 0.97883 0.97766 0.99639 1.25272 1.01415 1.08629 1.03031 1.83935 1.27239 1.39836 1.17483 1.22039 0.97392 0.99835 0.96985 1.21988 1.01944 0.95185 0.98714 1.22420 0.88363 0.95618 0.94703 1.87882 1.47567 1.57794 1.36006 1.22475 0.99086 0.91450 0.85296 0.92655 0.83883 0.85441 0.83310 0.94633 0.92249 0.89649 0.93018 0.90114 0.94699 0.89272 0.95632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.50 13.96 55.43 0.77 -23.72 16 2 C 0.12 3.26 4.43 -17.82 -0.08 3.18 16 3 Si 0.77 19.18 24.30 -169.99 -4.13 15.05 16 4 H -0.20 -4.71 3.57 73.06 0.26 -4.45 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.27 -6.88 6.67 56.52 0.38 -6.50 16 7 C -0.53 -14.04 6.91 -34.44 -0.24 -14.28 16 8 H 0.08 2.44 7.82 -52.48 -0.41 2.03 16 9 C 0.09 1.95 0.41 -156.67 -0.06 1.89 16 10 C -0.11 -2.30 2.67 -36.00 -0.10 -2.39 16 11 C -0.14 -2.98 8.97 -41.21 -0.37 -3.35 16 12 C -0.12 -2.26 10.18 -41.21 -0.42 -2.68 16 13 C -0.25 -4.36 11.23 29.04 0.33 -4.04 16 14 S 0.05 0.98 18.86 -107.50 -2.03 -1.04 16 15 C -0.12 -2.58 3.79 -26.55 -0.10 -2.68 16 16 C -0.14 -2.65 5.88 -26.60 -0.16 -2.80 16 17 C 0.07 1.15 6.84 37.20 0.25 1.40 16 18 O -0.37 -7.75 10.29 -35.23 -0.36 -8.11 16 19 C 0.09 1.94 5.45 37.20 0.20 2.14 16 20 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.14 3.17 8.06 -52.49 -0.42 2.74 16 22 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 23 H 0.15 2.16 8.06 -52.48 -0.42 1.73 16 24 H 0.04 0.67 7.66 -51.93 -0.40 0.27 16 25 H 0.06 1.32 4.51 -51.93 -0.23 1.09 16 26 H 0.08 1.80 7.39 -51.93 -0.38 1.42 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 252.09 15.07 3.80 3.80 Total: -1.00 -28.51 252.09 -6.80 -35.31 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.11 Total: 2.32 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -0.74 Total: -23.60 kcal Atomic # 7 Polarization: -24.50 SS G_CDS: 0.77 Total: -23.72 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.36 Total: -8.11 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.13 Total: 15.05 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.03 Total: -1.04 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.51 -6.80 -35.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150861.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.059 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds