Wall clock time and date at job start Mon Mar 30 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00009 * 2 1 4 4 H 1.48500 * 109.47037 * 245.43819 * 3 2 1 5 5 H 1.48504 * 109.47339 * 5.43778 * 3 2 1 6 6 H 1.48498 * 109.47616 * 125.43697 * 3 2 1 7 7 C 1.37879 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99787 * 321.40987 * 7 2 1 9 9 C 1.50698 * 120.00002 * 141.41256 * 7 2 1 10 10 C 1.50706 * 109.51865 * 325.73801 * 9 7 2 11 11 C 1.33397 * 125.20115 * 307.85222 * 10 9 7 12 12 C 1.38423 * 114.91782 * 179.97438 * 11 10 9 13 13 C 1.33394 * 114.92076 * 0.02562 * 12 11 10 14 14 S 1.75876 * 109.59588 * 359.97438 * 13 12 11 15 15 C 1.53174 * 109.57630 * 85.89250 * 9 7 2 16 16 C 1.53174 * 109.03524 * 62.95864 * 15 9 7 17 17 C 1.53089 * 109.16617 * 56.98032 * 16 15 9 18 18 O 1.42904 * 109.41505 * 302.39157 * 17 16 15 19 19 C 1.42910 * 114.09343 * 61.15762 * 18 17 16 20 20 H 0.97002 * 120.00427 * 0.02562 * 1 2 3 21 21 H 1.07998 * 122.53655 * 359.97438 * 11 10 9 22 22 H 1.08001 * 122.53728 * 179.73343 * 12 11 10 23 23 H 1.08005 * 125.19756 * 179.97438 * 13 12 11 24 24 H 1.09004 * 109.54399 * 182.82517 * 15 9 7 25 25 H 1.09001 * 109.54623 * 303.09143 * 15 9 7 26 26 H 1.08995 * 109.52309 * 297.07341 * 16 15 9 27 27 H 1.09001 * 109.57388 * 176.91779 * 16 15 9 28 28 H 1.08994 * 109.48598 * 182.40867 * 17 16 15 29 29 H 1.09004 * 109.49066 * 62.37850 * 17 16 15 30 30 H 1.09001 * 109.47640 * 178.85987 * 19 18 17 31 31 H 1.08995 * 109.49179 * 58.83304 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.0006 1.7554 -1.2734 5 1 1.2896 2.7433 0.1327 6 1 3.1997 1.6406 1.1407 7 6 2.0045 -1.1941 0.0005 8 1 1.6413 -2.0270 0.5843 9 6 3.2647 -1.3369 -0.8134 10 6 3.1429 -0.5246 -2.0769 11 6 2.1297 -0.5952 -2.9417 12 6 2.2349 0.2493 -4.0335 13 6 3.3337 1.0053 -4.0555 14 16 4.3146 0.6617 -2.6367 15 6 4.4617 -0.8385 0.0021 16 6 4.6222 -1.7206 1.2440 17 6 4.7837 -3.1790 0.8071 18 8 3.6516 -3.5694 0.0274 19 6 3.4787 -2.8101 -1.1709 20 1 -0.4851 0.8400 -0.0004 21 1 1.2909 -1.2607 -2.8007 22 1 1.4864 0.2896 -4.8110 23 1 3.5829 1.7191 -4.8268 24 1 5.3654 -0.8952 -0.6047 25 1 4.2903 0.1937 0.3077 26 1 3.7388 -1.6252 1.8752 27 1 5.5045 -1.4079 1.8025 28 1 4.8555 -3.8166 1.6882 29 1 5.6895 -3.2814 0.2095 30 1 2.6103 -3.1820 -1.7147 31 1 4.3672 -2.9075 -1.7946 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261150861.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:46 Heat of formation + Delta-G solvation = -23.426570 kcal Electronic energy + Delta-G solvation = -15733.624896 eV Core-core repulsion = 13299.326289 eV Total energy + Delta-G solvation = -2434.298607 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.54735 -38.40383 -35.68509 -33.91328 -32.58671 -29.01411 -27.11641 -25.92474 -25.04907 -23.12856 -20.94701 -19.78889 -18.67005 -17.55727 -17.09902 -16.68682 -16.37867 -15.93255 -15.39789 -14.92931 -14.59151 -14.35760 -14.10169 -13.66313 -13.35442 -13.04796 -12.86528 -12.53969 -12.25403 -11.96088 -11.82542 -11.79202 -11.46580 -11.37016 -11.00313 -10.23830 -10.16841 -9.23957 -8.84505 -8.36853 -6.09653 0.28952 0.87537 1.22863 1.41998 1.43745 1.48092 2.08565 2.44299 2.93573 3.18823 4.04630 4.17139 4.19495 4.34736 4.45226 4.48778 4.55268 4.72769 4.76076 4.84399 4.88798 4.94388 5.12088 5.20456 5.39979 5.46081 5.53128 5.70727 5.76531 5.92434 6.35439 6.53046 6.84940 7.42895 8.74227 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.022069 B = 0.014674 C = 0.012056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.425600 B = 1907.622424 C = 2321.950746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.080 3.920 3 Si 0.807 3.193 4 H -0.167 1.167 5 H -0.315 1.315 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.037 0.963 9 C 0.084 3.916 10 C -0.140 4.140 11 C -0.147 4.147 12 C -0.137 4.137 13 C -0.229 4.229 14 S 0.074 5.926 15 C -0.123 4.123 16 C -0.142 4.142 17 C 0.062 3.938 18 O -0.399 6.399 19 C 0.097 3.903 20 H 0.261 0.739 21 H 0.117 0.883 22 H 0.154 0.846 23 H 0.189 0.811 24 H 0.061 0.939 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.152 0.125 -6.123 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.124 4.124 3 Si 0.634 3.366 4 H -0.091 1.091 5 H -0.244 1.244 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.055 0.945 9 C 0.081 3.919 10 C -0.257 4.257 11 C -0.176 4.176 12 C -0.167 4.167 13 C -0.363 4.363 14 S 0.337 5.663 15 C -0.161 4.161 16 C -0.179 4.179 17 C -0.014 4.014 18 O -0.318 6.318 19 C 0.020 3.980 20 H 0.070 0.930 21 H 0.135 0.865 22 H 0.172 0.828 23 H 0.206 0.794 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.224 0.621 -5.575 13.449 hybrid contribution -1.739 0.745 0.061 1.893 sum 10.485 1.365 -5.514 11.925 Atomic orbital electron populations 1.70394 1.08669 1.27881 1.45959 1.25193 0.93751 1.01042 0.92409 0.88243 0.81453 0.81828 0.85124 1.09067 1.24398 1.20164 1.20395 1.07291 0.98048 1.30387 0.94450 1.17615 0.94403 0.91981 0.87911 1.24895 0.97975 1.02157 1.00708 1.20107 0.99285 1.02744 0.95499 1.20347 0.99266 0.97538 0.99561 1.25763 0.99922 1.07902 1.02759 1.83769 1.26241 1.38233 1.18039 1.21959 0.97418 0.98998 0.97704 1.21999 1.01890 0.96219 0.97836 1.22674 0.88211 0.94933 0.95632 1.87851 1.49417 1.58083 1.36402 1.22386 0.99648 0.90332 0.85680 0.92988 0.86474 0.82850 0.79372 0.92016 0.93917 0.93092 0.89687 0.87841 0.91850 0.90868 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.08 13.96 21.45 0.30 -53.78 16 2 C 0.08 4.52 4.43 84.65 0.38 4.89 16 3 Si 0.81 39.69 24.30 68.60 1.67 41.36 16 4 H -0.17 -7.25 3.57 88.96 0.32 -6.93 16 5 H -0.32 -16.39 7.11 99.48 0.71 -15.68 16 6 H -0.28 -13.55 6.67 99.48 0.66 -12.89 16 7 C -0.52 -28.60 6.91 25.60 0.18 -28.42 16 8 H 0.04 2.33 7.82 -2.91 -0.02 2.31 16 9 C 0.08 3.71 0.41 -53.58 -0.02 3.69 16 10 C -0.14 -5.79 2.67 24.59 0.07 -5.72 16 11 C -0.15 -6.08 8.97 21.22 0.19 -5.89 16 12 C -0.14 -4.62 10.18 21.22 0.22 -4.40 16 13 C -0.23 -6.96 11.23 66.72 0.75 -6.21 16 14 S 0.07 2.55 18.86 -56.49 -1.07 1.48 16 15 C -0.12 -4.83 3.79 30.71 0.12 -4.72 16 16 C -0.14 -5.09 5.88 30.68 0.18 -4.91 16 17 C 0.06 2.00 6.84 72.01 0.49 2.49 16 18 O -0.40 -16.31 10.29 -148.98 -1.53 -17.85 16 19 C 0.10 3.94 5.45 72.01 0.39 4.33 16 20 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 21 H 0.12 5.37 8.06 -2.91 -0.02 5.34 16 22 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 23 H 0.19 4.26 8.06 -2.91 -0.02 4.23 16 24 H 0.06 2.11 7.66 -2.38 -0.02 2.09 16 25 H 0.04 1.82 4.51 -2.39 -0.01 1.80 16 26 H 0.05 2.16 7.39 -2.39 -0.02 2.15 16 27 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -63.65 252.09 2.98 -60.67 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.68 Total: 12.99 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 2.93 Total: -44.88 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.30 Total: -53.78 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -1.53 Total: -17.85 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 1.67 Total: 41.36 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.07 Total: 1.48 kcal Total: -63.65 2.98 -60.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150861.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.242 kcal (2) G-P(sol) polarization free energy of solvation -63.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds