Wall clock time and date at job start Mon Mar 30 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99981 * 2 1 4 4 H 1.48502 * 109.47469 * 269.99963 * 3 2 1 5 5 H 1.48500 * 109.47257 * 29.99862 * 3 2 1 6 6 H 1.48494 * 109.47284 * 149.99922 * 3 2 1 7 7 C 1.37873 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00182 * 184.83417 * 7 2 1 9 9 C 1.50708 * 120.00107 * 4.82765 * 7 2 1 10 10 C 1.50704 * 109.30608 * 302.52658 * 9 7 2 11 11 C 1.34515 * 125.78912 * 294.75181 * 10 9 7 12 12 C 1.41384 * 106.84252 * 180.02562 * 11 10 9 13 13 C 1.34517 * 106.83904 * 359.97438 * 12 11 10 14 14 O 1.34299 * 125.79261 * 114.44382 * 10 9 7 15 15 C 1.52578 * 109.38805 * 182.77487 * 9 7 2 16 16 C 1.52590 * 110.68999 * 169.15428 * 15 9 7 17 17 C 1.53101 * 109.95627 * 70.69207 * 16 15 9 18 18 S 1.81749 * 108.84239 * 296.97649 * 17 16 15 19 19 C 1.53115 * 109.35976 * 62.30220 * 9 7 2 20 20 H 0.97006 * 120.00101 * 359.97438 * 1 2 3 21 21 H 1.08004 * 126.57741 * 359.96176 * 11 10 9 22 22 H 1.08001 * 126.58164 * 180.02562 * 12 11 10 23 23 H 1.07994 * 125.79160 * 180.02562 * 13 12 11 24 24 H 1.08991 * 109.22925 * 48.85589 * 15 9 7 25 25 H 1.08994 * 109.22676 * 289.44714 * 15 9 7 26 26 H 1.08995 * 109.38726 * 190.84158 * 16 15 9 27 27 H 1.08998 * 109.39043 * 310.54823 * 16 15 9 28 28 H 1.09005 * 109.57339 * 56.77896 * 17 16 15 29 29 H 1.08994 * 109.57904 * 177.16544 * 17 16 15 30 30 H 1.09006 * 109.60430 * 63.41312 * 19 9 7 31 31 H 1.08991 * 109.68574 * 303.06727 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0817 -1.1957 0.0783 9 6 1.2551 -2.4968 -0.1110 10 6 0.2587 -2.5955 1.0154 11 6 0.5570 -2.6801 2.3244 12 6 -0.6713 -2.7544 3.0205 13 6 -1.6468 -2.7100 2.0953 14 8 -1.0777 -2.6080 0.8832 15 6 2.2409 -3.6577 -0.0185 16 6 1.5005 -4.9822 0.1422 17 6 0.7912 -5.3463 -1.1649 18 16 -0.4586 -4.0775 -1.5276 19 6 0.5154 -2.5449 -1.4507 20 1 -0.4850 0.8401 0.0004 21 1 1.5453 -2.6906 2.7599 22 1 -0.8015 -2.8310 4.0899 23 1 -2.7077 -2.7456 2.2940 24 1 2.8949 -3.5057 0.8401 25 1 2.8426 -3.6908 -0.9267 26 1 2.2131 -5.7664 0.3978 27 1 0.7637 -4.8905 0.9402 28 1 1.5181 -5.3853 -1.9762 29 1 0.3064 -6.3168 -1.0593 30 1 1.2369 -2.5295 -2.2676 31 1 -0.1493 -1.6852 -1.5342 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261158311.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:43 Heat of formation + Delta-G solvation = 6.867110 kcal Electronic energy + Delta-G solvation = -15840.322809 eV Core-core repulsion = 13407.337835 eV Total energy + Delta-G solvation = -2432.984974 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.16233 -36.73553 -33.07628 -31.50048 -30.56532 -27.38777 -26.37576 -25.24614 -21.87871 -20.77363 -20.13883 -18.48345 -16.97553 -15.77294 -15.60539 -14.75122 -14.30522 -14.12862 -13.67820 -12.96235 -12.66795 -12.36516 -12.34565 -12.00383 -11.45309 -11.30637 -11.11935 -10.97562 -10.63058 -10.53370 -10.36262 -10.17053 -9.97560 -9.28294 -8.80670 -8.61061 -8.52327 -7.03224 -6.71323 -6.15561 -4.33248 2.66746 3.18191 3.25957 3.29743 3.31021 3.50749 3.99209 4.28683 4.47958 5.14538 5.36815 5.46369 5.73645 5.90061 6.03761 6.08856 6.19472 6.22787 6.28386 6.44252 6.53887 6.73759 6.83087 6.87057 7.11574 7.25647 7.37944 7.57817 7.70623 7.89078 8.00246 8.66137 8.72453 9.34055 10.82431 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.024026 B = 0.012654 C = 0.010627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.100964 B = 2212.216565 C = 2634.204548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.072 3.928 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.069 0.931 9 C 0.142 3.858 10 C 0.119 3.881 11 C -0.266 4.266 12 C -0.220 4.220 13 C -0.089 4.089 14 O -0.137 6.137 15 C -0.107 4.107 16 C -0.126 4.126 17 C -0.077 4.077 18 S -0.308 6.308 19 C -0.048 4.048 20 H 0.267 0.733 21 H 0.123 0.877 22 H 0.122 0.878 23 H 0.175 0.825 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.928 -6.316 0.298 6.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.139 3.861 10 C 0.066 3.934 11 C -0.286 4.286 12 C -0.240 4.240 13 C -0.158 4.158 14 O -0.030 6.030 15 C -0.145 4.145 16 C -0.165 4.165 17 C -0.225 4.225 18 S -0.080 6.080 19 C -0.196 4.196 20 H 0.077 0.923 21 H 0.141 0.859 22 H 0.140 0.860 23 H 0.192 0.808 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.526 -6.333 -0.240 6.359 hybrid contribution 1.626 1.266 0.694 2.174 sum 1.100 -5.067 0.454 5.205 Atomic orbital electron populations 1.69886 1.05773 1.27248 1.46669 1.25045 0.94945 0.99537 0.93892 0.86496 0.79916 0.82905 0.78245 1.20399 1.21101 1.19692 1.20952 0.93202 0.88555 1.52968 0.91318 1.17021 0.88278 0.94398 0.86381 1.22751 0.80492 0.94134 0.96069 1.20998 0.97707 1.16614 0.93239 1.21443 0.93411 1.10345 0.98764 1.23476 0.97950 1.10715 0.83614 1.84255 1.20112 1.68783 1.29864 1.21540 0.98078 0.93097 1.01742 1.21825 0.99865 0.97898 0.96895 1.23291 0.99550 0.99324 1.00341 1.86593 1.22263 1.06027 1.93153 1.23941 1.00420 0.94339 1.00891 0.92319 0.85866 0.86036 0.80779 0.91609 0.92249 0.92329 0.90451 0.90990 0.89354 0.91793 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.14 10.32 55.43 0.57 -22.57 16 2 C 0.07 1.85 5.11 -17.82 -0.09 1.76 16 3 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.52 -13.03 7.86 -34.44 -0.27 -13.30 16 8 H 0.07 1.70 7.75 -52.49 -0.41 1.29 16 9 C 0.14 3.26 0.41 -156.96 -0.07 3.20 16 10 C 0.12 2.83 2.12 -35.62 -0.08 2.75 16 11 C -0.27 -6.14 9.82 -39.70 -0.39 -6.53 16 12 C -0.22 -4.65 10.91 -39.70 -0.43 -5.09 16 13 C -0.09 -1.89 12.09 29.42 0.36 -1.54 16 14 O -0.14 -3.31 8.54 5.72 0.05 -3.26 16 15 C -0.11 -2.09 4.24 -27.16 -0.12 -2.21 16 16 C -0.13 -2.21 5.59 -26.89 -0.15 -2.36 16 17 C -0.08 -1.30 6.45 37.21 0.24 -1.06 16 18 S -0.31 -6.35 20.37 -107.50 -2.19 -8.54 16 19 C -0.05 -1.10 4.84 37.22 0.18 -0.92 16 20 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 21 H 0.12 2.74 8.06 -52.48 -0.42 2.31 16 22 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 23 H 0.18 3.02 8.06 -52.49 -0.42 2.60 16 24 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 25 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.08 1.51 6.22 -51.93 -0.32 1.19 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.06 1.39 8.14 -51.92 -0.42 0.97 16 31 H 0.13 3.25 6.39 -51.93 -0.33 2.92 16 LS Contribution 261.12 15.07 3.93 3.93 Total: -1.00 -27.39 261.12 -7.46 -34.85 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -3.99 Total: 5.66 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: -0.81 Total: -25.28 kcal Atomic # 7 Polarization: -23.14 SS G_CDS: 0.57 Total: -22.57 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: 0.05 Total: -3.26 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: -6.35 SS G_CDS: -2.19 Total: -8.54 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.39 -7.46 -34.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158311.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.718 kcal (2) G-P(sol) polarization free energy of solvation -27.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds