Wall clock time and date at job start Mon Mar 30 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00173 * 2 1 4 4 H 1.48500 * 109.47126 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47186 * 119.99873 * 3 2 1 6 6 H 1.48500 * 109.47006 * 239.99746 * 3 2 1 7 7 C 1.37882 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99885 * 173.74447 * 7 2 1 9 9 C 1.50699 * 120.00116 * 353.74493 * 7 2 1 10 10 C 1.50696 * 109.38951 * 58.55554 * 9 7 2 11 11 C 1.34516 * 125.79176 * 65.17042 * 10 9 7 12 12 C 1.41383 * 106.84301 * 179.89000 * 11 10 9 13 13 C 1.34513 * 106.83639 * 0.37519 * 12 11 10 14 14 O 1.34301 * 125.78799 * 245.48392 * 10 9 7 15 15 C 1.52581 * 109.38780 * 178.35570 * 9 7 2 16 16 C 1.52625 * 110.70102 * 190.92094 * 15 9 7 17 17 C 1.53102 * 109.87354 * 289.18230 * 16 15 9 18 18 S 1.81748 * 108.83879 * 63.06223 * 17 16 15 19 19 C 1.53098 * 109.38797 * 298.75203 * 9 7 2 20 20 H 0.97006 * 119.99920 * 0.02562 * 1 2 3 21 21 H 1.07996 * 126.57484 * 0.02686 * 11 10 9 22 22 H 1.07996 * 126.57964 * 180.12179 * 12 11 10 23 23 H 1.08005 * 125.78577 * 179.79486 * 13 12 11 24 24 H 1.08994 * 109.23008 * 311.14787 * 15 9 7 25 25 H 1.09005 * 109.22671 * 70.50745 * 15 9 7 26 26 H 1.09002 * 109.40336 * 169.07829 * 16 15 9 27 27 H 1.09001 * 109.38155 * 49.27237 * 16 15 9 28 28 H 1.08996 * 109.57641 * 303.25422 * 17 16 15 29 29 H 1.09001 * 109.67709 * 182.93277 * 17 16 15 30 30 H 1.08999 * 109.57862 * 296.63564 * 19 9 7 31 31 H 1.09004 * 109.57423 * 57.01885 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0797 -1.1970 -0.1014 9 6 1.2577 -2.4953 0.1433 10 6 0.2550 -2.6219 -0.9745 11 6 0.5457 -2.7343 -2.2831 12 6 -0.6864 -2.8298 -2.9698 13 6 -1.6566 -2.7617 -2.0405 14 8 -1.0805 -2.6358 -0.8338 15 6 2.2450 -3.6564 0.0722 16 6 1.5062 -4.9856 -0.0575 17 6 0.8055 -5.3224 1.2614 18 16 -0.4448 -4.0485 1.6038 19 6 0.5255 -2.5161 1.4877 20 1 -0.4850 0.8401 -0.0004 21 1 1.5314 -2.7508 -2.7242 22 1 -0.8227 -2.9330 -4.0361 23 1 -2.7187 -2.8018 -2.2322 24 1 2.8950 -3.5225 -0.7925 25 1 2.8515 -3.6679 0.9779 26 1 2.2189 -5.7738 -0.3002 27 1 0.7644 -4.9111 -0.8526 28 1 1.5372 -5.3424 2.0690 29 1 0.3225 -6.2964 1.1821 30 1 1.2517 -2.4813 2.2997 31 1 -0.1408 -1.6560 1.5540 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261158312.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:46 Heat of formation + Delta-G solvation = 6.987612 kcal Electronic energy + Delta-G solvation = -15837.596171 eV Core-core repulsion = 13404.616422 eV Total energy + Delta-G solvation = -2432.979749 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.16392 -36.73685 -33.07754 -31.50296 -30.56656 -27.38756 -26.37213 -25.24515 -21.87891 -20.77505 -20.14015 -18.48384 -16.97158 -15.77370 -15.60842 -14.75141 -14.30845 -14.12647 -13.67977 -12.95993 -12.66496 -12.36505 -12.34695 -12.00549 -11.45423 -11.30782 -11.12840 -10.95805 -10.62479 -10.53874 -10.37608 -10.16914 -9.98901 -9.28368 -8.78852 -8.61950 -8.52446 -7.03324 -6.71335 -6.15706 -4.33088 2.66777 3.19465 3.25645 3.28503 3.30770 3.50773 3.99083 4.28597 4.47858 5.14223 5.36818 5.46326 5.73801 5.90281 6.03869 6.08655 6.19345 6.22733 6.28380 6.44315 6.53816 6.73931 6.82933 6.87143 7.11509 7.25709 7.37793 7.57817 7.70551 7.89028 8.00352 8.65854 8.72192 9.33909 10.82319 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.023954 B = 0.012658 C = 0.010617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.619726 B = 2211.595464 C = 2636.715786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.072 3.928 3 Si 0.897 3.103 4 H -0.286 1.286 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.068 0.932 9 C 0.142 3.858 10 C 0.118 3.882 11 C -0.266 4.266 12 C -0.220 4.220 13 C -0.089 4.089 14 O -0.137 6.137 15 C -0.107 4.107 16 C -0.126 4.126 17 C -0.077 4.077 18 S -0.308 6.308 19 C -0.049 4.049 20 H 0.267 0.733 21 H 0.123 0.877 22 H 0.122 0.878 23 H 0.175 0.825 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 -6.307 -0.155 6.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.086 0.914 9 C 0.140 3.860 10 C 0.065 3.935 11 C -0.285 4.285 12 C -0.240 4.240 13 C -0.157 4.157 14 O -0.030 6.030 15 C -0.145 4.145 16 C -0.165 4.165 17 C -0.225 4.225 18 S -0.080 6.080 19 C -0.197 4.197 20 H 0.077 0.923 21 H 0.141 0.859 22 H 0.140 0.860 23 H 0.192 0.808 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.534 -6.314 0.398 6.349 hybrid contribution 1.634 1.247 -0.721 2.178 sum 1.099 -5.066 -0.323 5.194 Atomic orbital electron populations 1.69880 1.05786 1.27371 1.46502 1.25045 0.94934 0.99527 0.93876 0.86564 0.79653 0.82560 0.78827 1.21132 1.19956 1.20047 1.20908 0.93366 0.88621 1.52863 0.91365 1.17011 0.88209 0.94335 0.86469 1.22777 0.80552 0.94091 0.96110 1.20996 0.97681 1.16517 0.93343 1.21442 0.93423 1.10307 0.98803 1.23477 0.97908 1.10569 0.83787 1.84259 1.19998 1.68680 1.30105 1.21551 0.98076 0.93070 1.01776 1.21835 0.99915 0.97926 0.96798 1.23292 0.99572 0.99338 1.00321 1.86589 1.22439 1.05746 1.93218 1.23935 1.00500 0.94417 1.00807 0.92256 0.85870 0.86030 0.80772 0.91644 0.92229 0.92317 0.90432 0.91002 0.89361 0.91774 0.85558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.14 10.35 55.43 0.57 -22.56 16 2 C 0.07 1.86 5.11 -17.82 -0.09 1.77 16 3 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -13.06 7.86 -34.44 -0.27 -13.33 16 8 H 0.07 1.68 7.75 -52.48 -0.41 1.28 16 9 C 0.14 3.28 0.41 -156.98 -0.07 3.21 16 10 C 0.12 2.81 2.15 -35.63 -0.08 2.73 16 11 C -0.27 -6.14 9.82 -39.70 -0.39 -6.53 16 12 C -0.22 -4.66 10.91 -39.70 -0.43 -5.09 16 13 C -0.09 -1.89 12.09 29.42 0.36 -1.53 16 14 O -0.14 -3.32 8.56 5.71 0.05 -3.27 16 15 C -0.11 -2.10 4.24 -27.14 -0.11 -2.21 16 16 C -0.13 -2.20 5.60 -26.87 -0.15 -2.36 16 17 C -0.08 -1.30 6.45 37.21 0.24 -1.06 16 18 S -0.31 -6.35 20.36 -107.50 -2.19 -8.54 16 19 C -0.05 -1.12 4.83 37.21 0.18 -0.94 16 20 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 21 H 0.12 2.74 8.06 -52.49 -0.42 2.32 16 22 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 23 H 0.18 3.02 8.06 -52.48 -0.42 2.60 16 24 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 25 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.08 1.52 6.21 -51.93 -0.32 1.19 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.13 3.26 6.35 -51.93 -0.33 2.93 16 LS Contribution 261.13 15.07 3.94 3.94 Total: -1.00 -27.37 261.13 -7.46 -34.83 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -3.99 Total: 5.74 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -0.82 Total: -25.32 kcal Atomic # 7 Polarization: -23.14 SS G_CDS: 0.57 Total: -22.56 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: 0.05 Total: -3.27 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: -6.35 SS G_CDS: -2.19 Total: -8.54 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.37 -7.46 -34.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158312.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.815 kcal (2) G-P(sol) polarization free energy of solvation -27.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds