Wall clock time and date at job start Mon Mar 30 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00173 * 2 1 4 4 H 1.48500 * 109.47126 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47186 * 119.99873 * 3 2 1 6 6 H 1.48500 * 109.47006 * 239.99746 * 3 2 1 7 7 C 1.37882 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99885 * 173.74447 * 7 2 1 9 9 C 1.50699 * 120.00116 * 353.74493 * 7 2 1 10 10 C 1.50696 * 109.38951 * 58.55554 * 9 7 2 11 11 C 1.34516 * 125.79176 * 65.17042 * 10 9 7 12 12 C 1.41383 * 106.84301 * 179.89000 * 11 10 9 13 13 C 1.34513 * 106.83639 * 0.37519 * 12 11 10 14 14 O 1.34301 * 125.78799 * 245.48392 * 10 9 7 15 15 C 1.52581 * 109.38780 * 178.35570 * 9 7 2 16 16 C 1.52625 * 110.70102 * 190.92094 * 15 9 7 17 17 C 1.53102 * 109.87354 * 289.18230 * 16 15 9 18 18 S 1.81748 * 108.83879 * 63.06223 * 17 16 15 19 19 C 1.53098 * 109.38797 * 298.75203 * 9 7 2 20 20 H 0.97006 * 119.99920 * 0.02562 * 1 2 3 21 21 H 1.07996 * 126.57484 * 0.02686 * 11 10 9 22 22 H 1.07996 * 126.57964 * 180.12179 * 12 11 10 23 23 H 1.08005 * 125.78577 * 179.79486 * 13 12 11 24 24 H 1.08994 * 109.23008 * 311.14787 * 15 9 7 25 25 H 1.09005 * 109.22671 * 70.50745 * 15 9 7 26 26 H 1.09002 * 109.40336 * 169.07829 * 16 15 9 27 27 H 1.09001 * 109.38155 * 49.27237 * 16 15 9 28 28 H 1.08996 * 109.57641 * 303.25422 * 17 16 15 29 29 H 1.09001 * 109.67709 * 182.93277 * 17 16 15 30 30 H 1.08999 * 109.57862 * 296.63564 * 19 9 7 31 31 H 1.09004 * 109.57423 * 57.01885 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0797 -1.1970 -0.1014 9 6 1.2577 -2.4953 0.1433 10 6 0.2550 -2.6219 -0.9745 11 6 0.5457 -2.7343 -2.2831 12 6 -0.6864 -2.8298 -2.9698 13 6 -1.6566 -2.7617 -2.0405 14 8 -1.0805 -2.6358 -0.8338 15 6 2.2450 -3.6564 0.0722 16 6 1.5062 -4.9856 -0.0575 17 6 0.8055 -5.3224 1.2614 18 16 -0.4448 -4.0485 1.6038 19 6 0.5255 -2.5161 1.4877 20 1 -0.4850 0.8401 -0.0004 21 1 1.5314 -2.7508 -2.7242 22 1 -0.8227 -2.9330 -4.0361 23 1 -2.7187 -2.8018 -2.2322 24 1 2.8950 -3.5225 -0.7925 25 1 2.8515 -3.6679 0.9779 26 1 2.2189 -5.7738 -0.3002 27 1 0.7644 -4.9111 -0.8526 28 1 1.5372 -5.3424 2.0690 29 1 0.3225 -6.2964 1.1821 30 1 1.2517 -2.4813 2.2997 31 1 -0.1408 -1.6560 1.5540 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158312.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:45 Heat of formation + Delta-G solvation = -6.758319 kcal Electronic energy + Delta-G solvation = -15838.192239 eV Core-core repulsion = 13404.616422 eV Total energy + Delta-G solvation = -2433.575817 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.89134 -38.38444 -34.82264 -33.22744 -32.26954 -29.10291 -27.98461 -27.06992 -23.51364 -22.39746 -21.81519 -20.20826 -18.77630 -17.40405 -17.38042 -16.53835 -16.04065 -15.67377 -15.25839 -14.64501 -14.39148 -13.98589 -13.87150 -13.63395 -13.16457 -12.97321 -12.93167 -12.71033 -12.26508 -12.15841 -12.04699 -11.93241 -11.66578 -10.95214 -10.60994 -10.33286 -10.24961 -8.77763 -8.33952 -8.07174 -6.31238 1.12735 1.41314 1.43448 1.49880 1.56822 1.88850 2.24713 2.42295 2.81420 3.22121 3.97950 4.06289 4.27325 4.34185 4.44665 4.58244 4.62024 4.71205 4.75310 4.85751 4.98308 5.13311 5.23272 5.35955 5.37593 5.53529 5.59700 5.79387 5.88987 6.14044 6.18153 6.73583 6.98020 7.37911 8.86486 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.023954 B = 0.012658 C = 0.010617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.619726 B = 2211.595464 C = 2636.715786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.031 3.969 3 Si 0.949 3.051 4 H -0.290 1.290 5 H -0.267 1.267 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.067 0.933 9 C 0.131 3.869 10 C 0.108 3.892 11 C -0.285 4.285 12 C -0.223 4.223 13 C -0.098 4.098 14 O -0.160 6.160 15 C -0.105 4.105 16 C -0.119 4.119 17 C -0.066 4.066 18 S -0.331 6.331 19 C -0.042 4.042 20 H 0.261 0.739 21 H 0.124 0.876 22 H 0.151 0.849 23 H 0.210 0.790 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -7.592 -0.474 7.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.173 4.173 3 Si 0.775 3.225 4 H -0.216 1.216 5 H -0.192 1.192 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.086 0.914 9 C 0.129 3.871 10 C 0.055 3.945 11 C -0.304 4.304 12 C -0.242 4.242 13 C -0.166 4.166 14 O -0.054 6.054 15 C -0.142 4.142 16 C -0.158 4.158 17 C -0.214 4.214 18 S -0.103 6.103 19 C -0.191 4.191 20 H 0.071 0.929 21 H 0.142 0.858 22 H 0.168 0.832 23 H 0.226 0.774 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.133 0.867 30 H 0.083 0.917 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.121 -7.607 0.078 7.609 hybrid contribution 1.429 1.584 -0.644 2.228 sum 1.550 -6.024 -0.566 6.246 Atomic orbital electron populations 1.70025 1.06882 1.27326 1.47915 1.25672 0.95497 1.02176 0.93916 0.85736 0.78480 0.79341 0.78894 1.21593 1.19150 1.19997 1.21248 0.93549 0.89938 1.52130 0.91447 1.17138 0.88764 0.94841 0.86343 1.22826 0.80655 0.94536 0.96460 1.21220 0.98527 1.17064 0.93607 1.21770 0.92497 1.09661 1.00292 1.24243 0.99675 1.09711 0.82984 1.84237 1.20350 1.69202 1.31601 1.21512 0.97484 0.93073 1.02174 1.21751 0.99929 0.97706 0.96368 1.23432 0.98806 0.98517 1.00627 1.86584 1.24371 1.06011 1.93346 1.23608 0.99964 0.94629 1.00870 0.92944 0.85806 0.83153 0.77380 0.91823 0.91233 0.88671 0.92537 0.89018 0.86737 0.91684 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.61 10.35 21.45 0.22 -48.39 16 2 C 0.03 1.59 5.11 84.66 0.43 2.02 16 3 Si 0.95 41.75 29.54 68.60 2.03 43.78 16 4 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.53 -26.76 7.86 25.60 0.20 -26.56 16 8 H 0.07 3.32 7.75 -2.91 -0.02 3.29 16 9 C 0.13 6.03 0.41 -53.78 -0.02 6.01 16 10 C 0.11 5.13 2.15 24.83 0.05 5.19 16 11 C -0.28 -12.98 9.82 22.19 0.22 -12.76 16 12 C -0.22 -9.11 10.91 22.19 0.24 -8.87 16 13 C -0.10 -4.08 12.09 66.97 0.81 -3.27 16 14 O -0.16 -7.72 8.56 -2.48 -0.02 -7.74 16 15 C -0.10 -3.94 4.24 30.33 0.13 -3.81 16 16 C -0.12 -3.83 5.60 30.50 0.17 -3.66 16 17 C -0.07 -2.03 6.45 72.02 0.46 -1.56 16 18 S -0.33 -13.35 20.36 -56.49 -1.15 -14.50 16 19 C -0.04 -1.96 4.83 72.01 0.35 -1.61 16 20 H 0.26 14.05 8.31 -92.70 -0.77 13.28 16 21 H 0.12 5.47 8.06 -2.91 -0.02 5.45 16 22 H 0.15 5.10 8.06 -2.91 -0.02 5.08 16 23 H 0.21 6.80 8.06 -2.91 -0.02 6.77 16 24 H 0.06 2.38 8.08 -2.39 -0.02 2.36 16 25 H 0.07 2.44 8.08 -2.38 -0.02 2.42 16 26 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.06 2.09 6.21 -2.39 -0.01 2.08 16 28 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.11 2.97 8.14 -2.39 -0.02 2.96 16 30 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.09 4.83 6.35 -2.39 -0.02 4.81 16 Total: -1.00 -58.73 261.13 5.23 -53.49 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 1.11 Total: 22.24 kcal Atomic # 6 Polarization: -51.93 SS G_CDS: 3.05 Total: -48.88 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.22 Total: -48.39 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.02 Total: -7.74 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: -13.35 SS G_CDS: -1.15 Total: -14.50 kcal Total: -58.73 5.23 -53.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158312.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.733 kcal (2) G-P(sol) polarization free energy of solvation -58.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds