Wall clock time and date at job start Mon Mar 30 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30806 * 1 3 3 Si 1.86801 * 119.99884 * 2 1 4 4 H 1.48497 * 109.47014 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46996 * 120.00105 * 3 2 1 6 6 H 1.48497 * 109.46949 * 240.00153 * 3 2 1 7 7 C 1.40164 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00297 * 3.76007 * 7 2 1 9 9 C 1.39745 * 119.99544 * 183.75403 * 7 2 1 10 10 C 1.39555 * 126.20333 * 186.20001 * 9 7 2 11 11 C 1.39764 * 106.45845 * 180.02562 * 10 9 7 12 12 C 1.35663 * 107.34474 * 0.02562 * 11 10 9 13 13 C 1.50704 * 125.38796 * 179.97438 * 12 11 10 14 14 C 1.52581 * 109.22669 * 241.23684 * 13 12 11 15 15 C 1.53096 * 109.95935 * 169.00383 * 14 13 12 16 16 S 1.81745 * 108.83816 * 63.02272 * 15 14 13 17 17 C 1.81739 * 102.22171 * 306.73286 * 16 15 14 18 18 C 1.52577 * 109.22671 * 119.99756 * 13 12 11 19 19 O 1.34239 * 109.22068 * 359.73049 * 12 11 10 20 20 H 0.97003 * 120.00076 * 174.82362 * 1 2 3 21 21 H 1.07998 * 126.76781 * 0.02562 * 10 9 7 22 22 H 1.07999 * 126.32444 * 180.02562 * 11 10 9 23 23 H 1.09001 * 109.22132 * 0.59456 * 13 12 11 24 24 H 1.09006 * 109.38920 * 289.15247 * 14 13 12 25 25 H 1.09007 * 109.39241 * 48.84835 * 14 13 12 26 26 H 1.09002 * 109.57444 * 303.21670 * 15 14 13 27 27 H 1.09000 * 109.57441 * 182.82990 * 15 14 13 28 28 H 1.08998 * 109.58071 * 293.46080 * 17 16 15 29 29 H 1.09004 * 109.68295 * 173.13764 * 17 16 15 30 30 H 1.08996 * 109.39076 * 311.14227 * 18 13 12 31 31 H 1.09001 * 109.38615 * 70.94844 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 1.2770 2.7464 0.0006 5 1 3.0958 1.6964 1.2125 6 1 3.0957 1.6964 -1.2125 7 6 2.0089 -1.2139 0.0005 8 1 1.4706 -2.1482 -0.0604 9 6 3.4041 -1.2150 0.0798 10 6 4.2350 -2.3307 -0.0310 11 6 5.5450 -1.8644 0.1102 12 6 5.4786 -0.5224 0.2975 13 6 6.6610 0.3907 0.4956 14 6 6.5553 1.0602 1.8626 15 6 7.8681 1.7728 2.1984 16 16 8.1486 3.0913 0.9793 17 6 8.0103 2.1949 -0.5956 18 6 6.6815 1.4347 -0.6169 19 8 4.1933 -0.1359 0.2731 20 1 -0.4850 -0.8366 -0.0758 21 1 3.9266 -3.3529 -0.1937 22 1 6.4439 -2.4620 0.0765 23 1 7.5786 -0.1962 0.4541 24 1 5.7427 1.7866 1.8480 25 1 6.3495 0.3045 2.6208 26 1 8.6911 1.0592 2.1604 27 1 7.8035 2.2060 3.1965 28 1 8.8361 1.4894 -0.6881 29 1 8.0397 2.9022 -1.4244 30 1 6.5635 0.9391 -1.5804 31 1 5.8618 2.1377 -0.4685 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261163800.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:00 Heat of formation + Delta-G solvation = -28.895902 kcal Electronic energy + Delta-G solvation = -15048.467290 eV Core-core repulsion = 12613.931515 eV Total energy + Delta-G solvation = -2434.535775 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.84038 -36.79616 -33.76976 -31.48223 -31.39625 -29.77677 -27.23090 -23.56687 -22.86318 -20.66699 -20.33587 -19.16098 -18.20477 -16.73852 -15.86369 -14.72165 -14.38155 -14.27337 -13.89710 -13.63638 -13.39045 -12.79574 -12.76735 -12.53978 -12.51368 -11.72580 -11.34729 -11.19009 -10.94555 -10.85776 -10.51211 -10.22917 -9.98341 -9.64643 -9.53335 -9.43688 -8.48619 -7.62250 -7.50917 -7.32024 -4.57870 1.85441 2.59565 2.92298 3.21627 3.42967 3.48702 3.93838 4.02925 4.55873 4.80046 5.01777 5.04012 5.08421 5.12727 5.39206 5.48908 5.56836 5.75427 5.77824 6.06032 6.20215 6.22300 6.34304 6.45882 6.55616 6.90801 7.22653 7.35039 7.43141 7.82703 8.00663 8.31302 8.45750 8.89258 9.92555 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.031080 B = 0.008502 C = 0.007359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.684397 B = 3292.454258 C = 3803.750790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.042 3.958 3 Si 1.073 2.927 4 H -0.285 1.285 5 H -0.261 1.261 6 H -0.270 1.270 7 C -0.493 4.493 8 H 0.098 0.902 9 C 0.186 3.814 10 C -0.392 4.392 11 C -0.140 4.140 12 C -0.154 4.154 13 C 0.015 3.985 14 C -0.120 4.120 15 C -0.075 4.075 16 S -0.284 6.284 17 C -0.075 4.075 18 C -0.120 4.120 19 O -0.202 6.202 20 H 0.286 0.714 21 H 0.113 0.887 22 H 0.114 0.886 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.493 4.152 1.110 13.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.178 4.178 3 Si 0.899 3.101 4 H -0.212 1.212 5 H -0.187 1.187 6 H -0.196 1.196 7 C -0.522 4.522 8 H 0.116 0.884 9 C 0.135 3.865 10 C -0.413 4.413 11 C -0.160 4.160 12 C -0.200 4.200 13 C -0.004 4.004 14 C -0.159 4.159 15 C -0.223 4.223 16 S -0.059 6.059 17 C -0.223 4.223 18 C -0.159 4.159 19 O -0.104 6.104 20 H 0.098 0.902 21 H 0.131 0.869 22 H 0.132 0.868 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.120 0.880 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.356 7.114 1.387 14.325 hybrid contribution -0.137 -3.491 -0.327 3.509 sum 12.219 3.623 1.060 12.788 Atomic orbital electron populations 1.70572 1.07704 1.32943 1.32263 1.27360 0.95894 1.04703 0.89824 0.83379 0.74189 0.72495 0.80041 1.21197 1.18712 1.19599 1.19794 0.87895 0.96897 1.47656 0.88448 1.19849 0.90931 0.83176 0.92534 1.21180 0.91919 0.98011 1.30153 1.20815 0.97087 0.93416 1.04650 1.21109 0.82970 0.93250 1.22695 1.19228 0.93579 0.93869 0.93707 1.21863 0.95992 1.00284 0.97713 1.23477 1.01055 0.98212 0.99543 1.86691 1.94507 1.20795 1.03905 1.23474 1.01079 1.01673 0.96091 1.21866 0.95863 0.98085 1.00096 1.83777 1.16173 1.35388 1.75111 0.90211 0.86891 0.86833 0.90153 0.90331 0.90392 0.90005 0.87989 0.89991 0.87973 0.90354 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.89 13.65 55.56 0.76 -21.13 16 2 C 0.04 1.14 5.52 -17.27 -0.10 1.04 16 3 Si 1.07 25.26 25.95 -169.99 -4.41 20.85 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.26 -6.05 6.80 56.52 0.38 -5.67 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.49 -13.62 9.76 -38.30 -0.37 -13.99 16 8 H 0.10 2.72 8.06 -52.49 -0.42 2.29 16 9 C 0.19 4.99 6.51 -38.53 -0.25 4.74 16 10 C -0.39 -9.86 10.95 -38.52 -0.42 -10.28 16 11 C -0.14 -3.12 10.71 -39.93 -0.43 -3.55 16 12 C -0.15 -3.36 5.71 -35.23 -0.20 -3.56 16 13 C 0.01 0.25 2.33 -92.20 -0.21 0.03 16 14 C -0.12 -1.86 5.04 -26.90 -0.14 -2.00 16 15 C -0.07 -0.94 6.45 37.21 0.24 -0.70 16 16 S -0.28 -3.87 22.33 -107.50 -2.40 -6.27 16 17 C -0.08 -0.94 6.45 37.21 0.24 -0.70 16 18 C -0.12 -1.88 5.04 -26.90 -0.14 -2.01 16 19 O -0.20 -5.07 6.08 3.68 0.02 -5.05 16 20 H 0.29 7.43 8.73 -40.82 -0.36 7.08 16 21 H 0.11 2.73 8.06 -52.49 -0.42 2.30 16 22 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 23 H 0.08 1.20 8.02 -51.93 -0.42 0.78 16 24 H 0.08 1.37 8.06 -51.93 -0.42 0.95 16 25 H 0.08 1.22 8.09 -51.92 -0.42 0.80 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.23 8.08 -51.93 -0.42 0.82 16 31 H 0.08 1.34 8.06 -51.93 -0.42 0.92 16 LS Contribution 269.26 15.07 4.06 4.06 Total: -1.00 -28.02 269.26 -7.97 -35.99 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.22 Total: 2.54 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: -1.78 Total: -30.99 kcal Atomic # 7 Polarization: -21.89 SS G_CDS: 0.76 Total: -21.13 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: 0.02 Total: -5.05 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -4.41 Total: 20.85 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -2.40 Total: -6.27 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.02 -7.97 -35.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163800.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.096 kcal (2) G-P(sol) polarization free energy of solvation -28.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds