Wall clock time and date at job start Mon Mar 30 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30806 * 1 3 3 Si 1.86801 * 119.99884 * 2 1 4 4 H 1.48497 * 109.47014 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46996 * 120.00105 * 3 2 1 6 6 H 1.48497 * 109.46949 * 240.00153 * 3 2 1 7 7 C 1.40164 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00297 * 3.76007 * 7 2 1 9 9 C 1.39745 * 119.99544 * 183.75403 * 7 2 1 10 10 C 1.39555 * 126.20333 * 186.20001 * 9 7 2 11 11 C 1.39764 * 106.45845 * 180.02562 * 10 9 7 12 12 C 1.35663 * 107.34474 * 0.02562 * 11 10 9 13 13 C 1.50704 * 125.38796 * 179.97438 * 12 11 10 14 14 C 1.52581 * 109.22669 * 241.23684 * 13 12 11 15 15 C 1.53096 * 109.95935 * 169.00383 * 14 13 12 16 16 S 1.81745 * 108.83816 * 63.02272 * 15 14 13 17 17 C 1.81739 * 102.22171 * 306.73286 * 16 15 14 18 18 C 1.52577 * 109.22671 * 119.99756 * 13 12 11 19 19 O 1.34239 * 109.22068 * 359.73049 * 12 11 10 20 20 H 0.97003 * 120.00076 * 174.82362 * 1 2 3 21 21 H 1.07998 * 126.76781 * 0.02562 * 10 9 7 22 22 H 1.07999 * 126.32444 * 180.02562 * 11 10 9 23 23 H 1.09001 * 109.22132 * 0.59456 * 13 12 11 24 24 H 1.09006 * 109.38920 * 289.15247 * 14 13 12 25 25 H 1.09007 * 109.39241 * 48.84835 * 14 13 12 26 26 H 1.09002 * 109.57444 * 303.21670 * 15 14 13 27 27 H 1.09000 * 109.57441 * 182.82990 * 15 14 13 28 28 H 1.08998 * 109.58071 * 293.46080 * 17 16 15 29 29 H 1.09004 * 109.68295 * 173.13764 * 17 16 15 30 30 H 1.08996 * 109.39076 * 311.14227 * 18 13 12 31 31 H 1.09001 * 109.38615 * 70.94844 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 1.2770 2.7464 0.0006 5 1 3.0958 1.6964 1.2125 6 1 3.0957 1.6964 -1.2125 7 6 2.0089 -1.2139 0.0005 8 1 1.4706 -2.1482 -0.0604 9 6 3.4041 -1.2150 0.0798 10 6 4.2350 -2.3307 -0.0310 11 6 5.5450 -1.8644 0.1102 12 6 5.4786 -0.5224 0.2975 13 6 6.6610 0.3907 0.4956 14 6 6.5553 1.0602 1.8626 15 6 7.8681 1.7728 2.1984 16 16 8.1486 3.0913 0.9793 17 6 8.0103 2.1949 -0.5956 18 6 6.6815 1.4347 -0.6169 19 8 4.1933 -0.1359 0.2731 20 1 -0.4850 -0.8366 -0.0758 21 1 3.9266 -3.3529 -0.1937 22 1 6.4439 -2.4620 0.0765 23 1 7.5786 -0.1962 0.4541 24 1 5.7427 1.7866 1.8480 25 1 6.3495 0.3045 2.6208 26 1 8.6911 1.0592 2.1604 27 1 7.8035 2.2060 3.1965 28 1 8.8361 1.4894 -0.6881 29 1 8.0397 2.9022 -1.4244 30 1 6.5635 0.9391 -1.5804 31 1 5.8618 2.1377 -0.4685 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261163800.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:00 Heat of formation + Delta-G solvation = -43.723998 kcal Electronic energy + Delta-G solvation = -15049.110284 eV Core-core repulsion = 12613.931515 eV Total energy + Delta-G solvation = -2435.178769 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.75511 -38.10254 -35.78241 -33.37806 -32.49108 -31.57115 -28.73653 -25.29456 -23.98158 -22.26380 -22.18829 -20.88692 -20.18324 -17.87852 -17.49231 -16.55331 -16.00427 -15.79306 -15.53752 -14.88311 -14.68944 -14.46203 -14.08436 -13.91996 -13.65979 -13.60099 -13.10849 -12.93037 -12.40881 -12.32740 -11.96263 -11.86449 -11.55857 -11.43079 -11.35720 -10.62391 -10.37896 -9.54704 -9.31249 -8.65513 -6.62427 0.86164 0.99533 1.31036 1.57714 1.60497 1.60843 2.02961 2.11760 2.76851 3.00206 3.59398 3.81859 3.94913 4.02674 4.28067 4.31857 4.44922 4.50339 4.54709 4.78950 4.79180 4.88750 4.97984 5.04351 5.19924 5.24404 5.26625 5.33894 5.49265 5.83643 6.06164 6.36161 6.44645 6.91327 7.86294 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.031080 B = 0.008502 C = 0.007359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.684397 B = 3292.454258 C = 3803.750790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.014 3.986 3 Si 1.103 2.897 4 H -0.270 1.270 5 H -0.260 1.260 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.077 0.923 9 C 0.154 3.846 10 C -0.402 4.402 11 C -0.153 4.153 12 C -0.135 4.135 13 C 0.012 3.988 14 C -0.118 4.118 15 C -0.063 4.063 16 S -0.309 6.309 17 C -0.063 4.063 18 C -0.120 4.120 19 O -0.211 6.211 20 H 0.283 0.717 21 H 0.114 0.886 22 H 0.151 0.849 23 H 0.112 0.888 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.691 4.995 1.297 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.202 4.202 3 Si 0.925 3.075 4 H -0.196 1.196 5 H -0.185 1.185 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.095 0.905 9 C 0.103 3.897 10 C -0.422 4.422 11 C -0.172 4.172 12 C -0.181 4.181 13 C -0.006 4.006 14 C -0.157 4.157 15 C -0.210 4.210 16 S -0.083 6.083 17 C -0.211 4.211 18 C -0.159 4.159 19 O -0.113 6.113 20 H 0.094 0.906 21 H 0.132 0.868 22 H 0.169 0.831 23 H 0.130 0.870 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.124 0.876 27 H 0.135 0.865 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.094 0.906 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.541 7.948 1.574 17.527 hybrid contribution -0.971 -3.832 -0.374 3.971 sum 14.570 4.116 1.200 15.188 Atomic orbital electron populations 1.70606 1.07976 1.32751 1.34236 1.28236 0.96120 1.06575 0.89225 0.83029 0.73746 0.70628 0.80113 1.19638 1.18526 1.19240 1.19748 0.88898 0.96579 1.50160 0.90497 1.19905 0.91051 0.84268 0.94475 1.21504 0.93460 0.97843 1.29428 1.21173 0.97143 0.93924 1.04965 1.22275 0.82950 0.94484 1.18405 1.19533 0.92242 0.93960 0.94905 1.21779 0.97205 0.99828 0.96877 1.23445 0.99755 0.97991 0.99848 1.86878 1.94336 1.22064 1.05059 1.23443 0.99709 1.01991 0.95931 1.21797 0.97165 0.97531 0.99375 1.83790 1.17561 1.35232 1.74721 0.90614 0.86813 0.83092 0.86967 0.92714 0.90590 0.87615 0.86523 0.87607 0.86469 0.90551 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.19 13.65 21.87 0.30 -45.89 16 2 C 0.01 0.77 5.52 85.31 0.47 1.24 16 3 Si 1.10 51.45 25.95 68.60 1.78 53.23 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.26 -11.87 6.80 99.48 0.68 -11.19 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.52 -30.05 9.76 23.10 0.23 -29.83 16 8 H 0.08 4.56 8.06 -2.91 -0.02 4.53 16 9 C 0.15 8.35 6.51 22.95 0.15 8.50 16 10 C -0.40 -20.08 10.95 22.96 0.25 -19.83 16 11 C -0.15 -6.43 10.71 22.04 0.24 -6.20 16 12 C -0.14 -5.57 5.71 25.09 0.14 -5.43 16 13 C 0.01 0.36 2.33 -11.82 -0.03 0.33 16 14 C -0.12 -3.32 5.04 30.49 0.15 -3.17 16 15 C -0.06 -1.32 6.45 72.01 0.46 -0.85 16 16 S -0.31 -7.34 22.33 -56.49 -1.26 -8.60 16 17 C -0.06 -1.33 6.45 72.02 0.46 -0.86 16 18 C -0.12 -3.37 5.04 30.49 0.15 -3.22 16 19 O -0.21 -10.46 6.08 -9.74 -0.06 -10.52 16 20 H 0.28 15.34 8.73 -92.71 -0.81 14.53 16 21 H 0.11 5.53 8.06 -2.91 -0.02 5.51 16 22 H 0.15 5.14 8.06 -2.91 -0.02 5.11 16 23 H 0.11 2.73 8.02 -2.39 -0.02 2.71 16 24 H 0.05 1.81 8.06 -2.38 -0.02 1.79 16 25 H 0.08 2.17 8.09 -2.38 -0.02 2.15 16 26 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.08 2.18 8.08 -2.39 -0.02 2.16 16 31 H 0.05 1.79 8.06 -2.39 -0.02 1.77 16 Total: -1.00 -61.23 269.26 4.48 -56.75 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.04 Total: 14.34 kcal Atomic # 6 Polarization: -62.00 SS G_CDS: 2.69 Total: -59.31 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.30 Total: -45.89 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -0.06 Total: -10.52 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 1.78 Total: 53.23 kcal Atomic # 16 Polarization: -7.34 SS G_CDS: -1.26 Total: -8.60 kcal Total: -61.23 4.48 -56.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163800.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.024 kcal (2) G-P(sol) polarization free energy of solvation -61.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds