Wall clock time and date at job start Mon Mar 30 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99841 * 2 1 4 4 H 1.48501 * 109.47127 * 269.99855 * 3 2 1 5 5 H 1.48506 * 109.47236 * 29.99765 * 3 2 1 6 6 H 1.48498 * 109.47351 * 150.00037 * 3 2 1 7 7 C 1.37874 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00291 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00237 * 179.97438 * 7 2 1 10 10 H 1.09006 * 109.47759 * 59.97736 * 9 7 2 11 11 C 1.53092 * 109.48225 * 180.02562 * 9 7 2 12 12 C 1.53172 * 109.16246 * 62.38957 * 11 9 7 13 13 C 1.53183 * 109.03877 * 56.97776 * 12 11 9 14 14 C 1.53091 * 109.16329 * 303.02053 * 13 12 11 15 15 H 1.09001 * 109.48245 * 297.61360 * 14 13 12 16 16 C 1.50695 * 109.48086 * 177.58973 * 14 13 12 17 17 C 1.33389 * 125.20134 * 99.71415 * 16 14 13 18 18 C 1.38433 * 114.92022 * 180.26674 * 17 16 14 19 19 C 1.33388 * 114.91766 * 0.02562 * 18 17 16 20 20 S 1.75879 * 109.59837 * 0.02562 * 19 18 17 21 21 O 1.42905 * 109.49060 * 299.95583 * 9 7 2 22 22 H 0.96998 * 120.00549 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.52090 * 302.47763 * 11 9 7 24 24 H 1.08997 * 109.56874 * 182.32484 * 11 9 7 25 25 H 1.09002 * 109.54322 * 297.11595 * 12 11 9 26 26 H 1.08999 * 109.61879 * 176.88750 * 12 11 9 27 27 H 1.09001 * 109.52296 * 183.11192 * 13 12 11 28 28 H 1.08998 * 109.57057 * 62.95552 * 13 12 11 29 29 H 1.07998 * 122.54399 * 0.25181 * 17 16 14 30 30 H 1.08000 * 122.53671 * 180.02562 * 18 17 16 31 31 H 1.08007 * 125.20125 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8754 -0.6792 0.8893 11 6 4.0221 -2.6373 0.0001 12 6 3.5572 -3.3352 -1.2817 13 6 4.0576 -2.5416 -2.4925 14 6 3.5457 -1.1020 -2.3964 15 1 2.4561 -1.1008 -2.4277 16 6 4.0826 -0.2993 -3.5532 17 6 3.4074 -0.0080 -4.6661 18 6 4.1099 0.7394 -5.5957 19 6 5.3556 1.0545 -5.2379 20 16 5.6987 0.3887 -3.6466 21 8 3.9879 -0.5221 -1.1679 22 1 -0.4851 0.8400 -0.0004 23 1 3.6239 -3.1644 0.8670 24 1 5.1113 -2.6392 0.0413 25 1 2.4681 -3.3783 -1.2989 26 1 3.9627 -4.3464 -1.3156 27 1 3.6847 -3.0004 -3.4082 28 1 5.1476 -2.5406 -2.5033 29 1 2.3899 -0.3310 -4.8296 30 1 3.6817 1.0442 -6.5392 31 1 6.0481 1.6298 -5.8346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306195108.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:03 Heat of formation + Delta-G solvation = -20.871483 kcal Electronic energy + Delta-G solvation = -15325.060815 eV Core-core repulsion = 12890.873005 eV Total energy + Delta-G solvation = -2434.187810 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.78024 -37.14800 -32.75447 -32.66743 -31.37909 -28.37495 -25.82701 -24.16163 -22.41129 -21.83373 -19.20580 -18.62369 -17.33326 -16.41174 -15.34536 -14.86980 -14.63437 -14.07989 -13.77780 -13.40187 -12.73148 -12.46829 -12.28993 -12.27928 -11.86891 -11.75292 -11.55636 -10.74812 -10.65665 -10.42710 -10.33200 -10.04289 -9.95032 -9.69767 -8.94260 -8.66195 -8.41521 -8.10380 -8.02294 -6.14662 -4.24320 1.35490 2.02198 2.43498 3.07180 3.43845 3.48782 3.60127 4.48675 4.68334 5.22977 5.29566 5.44977 5.58406 5.66408 5.76795 5.87447 6.01122 6.02965 6.19843 6.35660 6.40890 6.47017 6.66147 6.72222 6.74977 6.80689 6.85450 7.00399 7.28746 7.59783 8.14994 8.59472 8.87004 9.48979 10.95176 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.023476 B = 0.011355 C = 0.009277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.434184 B = 2465.336895 C = 3017.366471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.084 3.916 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.303 1.303 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.078 0.922 9 C 0.172 3.828 10 H 0.068 0.932 11 C -0.132 4.132 12 C -0.110 4.110 13 C -0.133 4.133 14 C 0.164 3.836 15 H 0.093 0.907 16 C -0.139 4.139 17 C -0.153 4.153 18 C -0.129 4.129 19 C -0.240 4.240 20 S 0.113 5.887 21 O -0.393 6.393 22 H 0.265 0.735 23 H 0.063 0.937 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.298 -1.219 -8.359 12.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.120 4.120 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.231 1.231 6 H -0.189 1.189 7 C -0.587 4.587 8 H 0.096 0.904 9 C 0.117 3.883 10 H 0.085 0.915 11 C -0.169 4.169 12 C -0.148 4.148 13 C -0.171 4.171 14 C 0.104 3.896 15 H 0.110 0.890 16 C -0.256 4.256 17 C -0.183 4.183 18 C -0.161 4.161 19 C -0.375 4.375 20 S 0.377 5.623 21 O -0.314 6.314 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.535 -0.935 -7.399 12.908 hybrid contribution -1.098 0.755 -1.003 1.668 sum 9.437 -0.181 -8.402 12.636 Atomic orbital electron populations 1.69946 1.06539 1.27410 1.48857 1.25002 0.94622 0.99699 0.92697 0.86482 0.79624 0.82316 0.79036 1.19961 1.23145 1.18944 1.21446 0.89490 0.94763 1.52958 0.90432 1.20322 0.94757 0.88848 0.84373 0.91489 1.21974 0.98607 0.98803 0.97552 1.21469 1.02119 0.96825 0.94371 1.22077 1.00390 0.96000 0.98617 1.20066 0.99088 0.88768 0.81629 0.88962 1.24706 0.96789 1.04400 0.99746 1.20077 1.01616 1.02480 0.94107 1.20072 0.94180 1.00923 1.00885 1.25603 1.01338 1.09777 1.00814 1.84259 1.13996 1.50488 1.13586 1.87791 1.74118 1.55991 1.13530 0.92546 0.91852 0.93737 0.90620 0.93432 0.92041 0.92400 0.84310 0.84805 0.82508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 2 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 3 Si 0.90 23.13 26.18 -169.99 -4.45 18.68 16 4 H -0.27 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.26 -6.69 6.54 56.52 0.37 -6.32 16 7 C -0.55 -14.81 7.18 -34.44 -0.25 -15.06 16 8 H 0.08 2.23 7.11 -52.48 -0.37 1.86 16 9 C 0.17 4.05 2.64 -27.83 -0.07 3.98 16 10 H 0.07 1.61 7.20 -51.93 -0.37 1.24 16 11 C -0.13 -2.59 5.59 -26.59 -0.15 -2.74 16 12 C -0.11 -2.02 5.78 -26.55 -0.15 -2.17 16 13 C -0.13 -2.38 5.40 -26.59 -0.14 -2.52 16 14 C 0.16 3.43 2.81 -27.84 -0.08 3.35 16 15 H 0.09 2.17 7.07 -51.93 -0.37 1.81 16 16 C -0.14 -2.63 5.48 -36.01 -0.20 -2.83 16 17 C -0.15 -2.62 10.04 -41.20 -0.41 -3.03 16 18 C -0.13 -1.91 10.18 -41.20 -0.42 -2.33 16 19 C -0.24 -3.44 11.23 29.04 0.33 -3.11 16 20 S 0.11 1.90 23.12 -107.50 -2.49 -0.59 16 21 O -0.39 -9.17 7.75 -35.23 -0.27 -9.44 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.08 1.52 6.85 -51.93 -0.36 1.16 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 30 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 31 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 264.98 15.07 3.99 3.99 Total: -1.00 -29.61 264.98 -8.11 -37.72 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.02 Total: -0.34 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -1.65 Total: -24.16 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.77 Total: -25.86 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.27 Total: -9.44 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.45 Total: 18.68 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.49 Total: -0.59 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.61 -8.11 -37.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306195108.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.846 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds