Wall clock time and date at job start Mon Mar 30 2020 05:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99841 * 2 1 4 4 H 1.48501 * 109.47127 * 269.99855 * 3 2 1 5 5 H 1.48506 * 109.47236 * 29.99765 * 3 2 1 6 6 H 1.48498 * 109.47351 * 150.00037 * 3 2 1 7 7 C 1.37874 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00291 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00237 * 179.97438 * 7 2 1 10 10 H 1.09006 * 109.47759 * 59.97736 * 9 7 2 11 11 C 1.53092 * 109.48225 * 180.02562 * 9 7 2 12 12 C 1.53172 * 109.16246 * 62.38957 * 11 9 7 13 13 C 1.53183 * 109.03877 * 56.97776 * 12 11 9 14 14 C 1.53091 * 109.16329 * 303.02053 * 13 12 11 15 15 H 1.09001 * 109.48245 * 297.61360 * 14 13 12 16 16 C 1.50695 * 109.48086 * 177.58973 * 14 13 12 17 17 C 1.33389 * 125.20134 * 99.71415 * 16 14 13 18 18 C 1.38433 * 114.92022 * 180.26674 * 17 16 14 19 19 C 1.33388 * 114.91766 * 0.02562 * 18 17 16 20 20 S 1.75879 * 109.59837 * 0.02562 * 19 18 17 21 21 O 1.42905 * 109.49060 * 299.95583 * 9 7 2 22 22 H 0.96998 * 120.00549 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.52090 * 302.47763 * 11 9 7 24 24 H 1.08997 * 109.56874 * 182.32484 * 11 9 7 25 25 H 1.09002 * 109.54322 * 297.11595 * 12 11 9 26 26 H 1.08999 * 109.61879 * 176.88750 * 12 11 9 27 27 H 1.09001 * 109.52296 * 183.11192 * 13 12 11 28 28 H 1.08998 * 109.57057 * 62.95552 * 13 12 11 29 29 H 1.07998 * 122.54399 * 0.25181 * 17 16 14 30 30 H 1.08000 * 122.53671 * 180.02562 * 18 17 16 31 31 H 1.08007 * 125.20125 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8754 -0.6792 0.8893 11 6 4.0221 -2.6373 0.0001 12 6 3.5572 -3.3352 -1.2817 13 6 4.0576 -2.5416 -2.4925 14 6 3.5457 -1.1020 -2.3964 15 1 2.4561 -1.1008 -2.4277 16 6 4.0826 -0.2993 -3.5532 17 6 3.4074 -0.0080 -4.6661 18 6 4.1099 0.7394 -5.5957 19 6 5.3556 1.0545 -5.2379 20 16 5.6987 0.3887 -3.6466 21 8 3.9879 -0.5221 -1.1679 22 1 -0.4851 0.8400 -0.0004 23 1 3.6239 -3.1644 0.8670 24 1 5.1113 -2.6392 0.0413 25 1 2.4681 -3.3783 -1.2989 26 1 3.9627 -4.3464 -1.3156 27 1 3.6847 -3.0004 -3.4082 28 1 5.1476 -2.5406 -2.5033 29 1 2.3899 -0.3310 -4.8296 30 1 3.6817 1.0442 -6.5392 31 1 6.0481 1.6298 -5.8346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306195108.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:02 Heat of formation + Delta-G solvation = -38.287517 kcal Electronic energy + Delta-G solvation = -15325.816031 eV Core-core repulsion = 12890.873005 eV Total energy + Delta-G solvation = -2434.943026 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.43188 -38.45991 -34.75955 -34.33186 -33.05411 -29.88562 -27.67489 -25.59611 -24.04712 -23.34448 -20.83368 -20.04196 -19.06442 -18.07893 -17.00516 -16.42638 -16.24621 -15.82412 -15.53602 -14.92156 -14.57442 -14.11854 -13.73895 -13.59043 -13.42390 -13.17456 -13.13620 -12.74655 -12.42784 -12.00573 -11.83737 -11.77750 -11.59866 -11.44108 -10.89355 -10.73130 -10.07863 -9.48243 -9.35963 -8.36243 -6.46077 0.09148 0.75411 1.18864 1.33719 1.38779 1.50405 1.83950 2.34609 2.88196 3.27892 3.90861 4.09087 4.17261 4.24268 4.39637 4.44259 4.60950 4.65823 4.71491 4.87619 4.91430 5.09537 5.17926 5.22870 5.25552 5.37733 5.38185 5.51075 5.60500 5.65431 6.06982 6.62935 6.73824 7.29382 8.77417 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.023476 B = 0.011355 C = 0.009277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.434184 B = 2465.336895 C = 3017.366471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.038 3.962 3 Si 0.947 3.053 4 H -0.282 1.282 5 H -0.301 1.301 6 H -0.255 1.255 7 C -0.537 4.537 8 H 0.049 0.951 9 C 0.169 3.831 10 H 0.062 0.938 11 C -0.128 4.128 12 C -0.108 4.108 13 C -0.125 4.125 14 C 0.164 3.836 15 H 0.052 0.948 16 C -0.182 4.182 17 C -0.151 4.151 18 C -0.139 4.139 19 C -0.217 4.217 20 S 0.103 5.897 21 O -0.402 6.402 22 H 0.266 0.734 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.139 0.861 30 H 0.167 0.833 31 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.578 -0.925 -9.875 15.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.162 4.162 3 Si 0.775 3.225 4 H -0.208 1.208 5 H -0.229 1.229 6 H -0.179 1.179 7 C -0.575 4.575 8 H 0.067 0.933 9 C 0.113 3.887 10 H 0.079 0.921 11 C -0.166 4.166 12 C -0.146 4.146 13 C -0.163 4.163 14 C 0.105 3.895 15 H 0.070 0.930 16 C -0.299 4.299 17 C -0.182 4.182 18 C -0.169 4.169 19 C -0.352 4.352 20 S 0.366 5.634 21 O -0.323 6.323 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.157 0.843 30 H 0.185 0.815 31 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 12.828 -0.653 -8.910 15.632 hybrid contribution -1.805 0.636 -0.623 2.012 sum 11.024 -0.017 -9.532 14.574 Atomic orbital electron populations 1.70044 1.07869 1.28017 1.51416 1.25627 0.95083 1.02447 0.93056 0.85681 0.78988 0.79424 0.78431 1.20840 1.22912 1.17892 1.21671 0.91617 0.93300 1.50914 0.93287 1.20270 0.92289 0.91499 0.84609 0.92059 1.21921 0.99948 0.96197 0.98495 1.21454 1.00533 0.98671 0.93928 1.22022 1.01074 0.94050 0.99143 1.20022 0.97012 0.91078 0.81390 0.93046 1.24579 0.98726 1.06737 0.99870 1.20382 1.01782 1.01881 0.94159 1.20350 0.94268 1.00551 1.01700 1.26052 1.01625 1.08300 0.99236 1.84201 1.12565 1.50862 1.15783 1.87724 1.73762 1.56668 1.14186 0.92528 0.91570 0.91353 0.93364 0.89997 0.90382 0.90988 0.84322 0.81534 0.78785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.70 13.96 21.45 0.30 -57.40 16 2 C 0.04 2.21 5.47 84.65 0.46 2.67 16 3 Si 0.95 48.39 26.18 68.60 1.80 50.19 16 4 H -0.28 -14.69 7.11 99.48 0.71 -13.98 16 5 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 6 H -0.25 -12.48 6.54 99.48 0.65 -11.83 16 7 C -0.54 -29.76 7.18 25.60 0.18 -29.57 16 8 H 0.05 2.94 7.11 -2.91 -0.02 2.92 16 9 C 0.17 7.92 2.64 29.88 0.08 8.00 16 10 H 0.06 2.92 7.20 -2.38 -0.02 2.91 16 11 C -0.13 -4.87 5.59 30.68 0.17 -4.70 16 12 C -0.11 -3.83 5.78 30.71 0.18 -3.65 16 13 C -0.12 -4.30 5.40 30.69 0.17 -4.14 16 14 C 0.16 6.85 2.81 29.88 0.08 6.94 16 15 H 0.05 2.53 7.07 -2.39 -0.02 2.51 16 16 C -0.18 -6.71 5.48 24.59 0.13 -6.58 16 17 C -0.15 -4.97 10.04 21.22 0.21 -4.76 16 18 C -0.14 -3.62 10.18 21.22 0.22 -3.41 16 19 C -0.22 -5.37 11.23 66.72 0.75 -4.62 16 20 S 0.10 3.21 23.12 -56.49 -1.31 1.90 16 21 O -0.40 -18.57 7.75 -148.98 -1.15 -19.73 16 22 H 0.27 15.56 8.31 -92.71 -0.77 14.78 16 23 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.05 1.96 6.85 -2.39 -0.02 1.94 16 26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.14 4.40 8.06 -2.91 -0.02 4.37 16 30 H 0.17 3.23 8.06 -2.91 -0.02 3.20 16 31 H 0.20 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -64.79 264.98 3.33 -61.46 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.06 Total: 7.38 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 2.64 Total: -43.80 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.30 Total: -57.40 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -1.15 Total: -19.73 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 1.80 Total: 50.19 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.31 Total: 1.90 kcal Total: -64.79 3.33 -61.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306195108.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.171 kcal (2) G-P(sol) polarization free energy of solvation -64.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds