Wall clock time and date at job start Mon Mar 30 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 H 1.08993 * 109.48707 * 299.99490 * 9 7 2 11 11 C 1.53094 * 109.47646 * 179.97438 * 9 7 2 12 12 C 1.53177 * 109.16676 * 297.62561 * 11 9 7 13 13 C 1.53170 * 109.03776 * 303.02165 * 12 11 9 14 14 C 1.53095 * 109.16682 * 56.97652 * 13 12 11 15 15 H 1.09005 * 109.48067 * 62.37296 * 14 13 12 16 16 C 1.50696 * 109.48393 * 182.39550 * 14 13 12 17 17 C 1.33387 * 125.20659 * 264.71844 * 16 14 13 18 18 C 1.38431 * 114.91922 * 179.85858 * 17 16 14 19 19 C 1.33381 * 114.92058 * 0.43393 * 18 17 16 20 20 S 1.75882 * 109.59499 * 359.76775 * 19 18 17 21 21 O 1.42902 * 109.48166 * 60.02490 * 9 7 2 22 22 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.52446 * 57.53217 * 11 9 7 24 24 H 1.09004 * 109.52200 * 177.65664 * 11 9 7 25 25 H 1.09006 * 109.54244 * 62.88349 * 12 11 9 26 26 H 1.08997 * 109.54507 * 183.05937 * 12 11 9 27 27 H 1.09002 * 109.52284 * 176.88312 * 13 12 11 28 28 H 1.09001 * 109.52185 * 297.01021 * 13 12 11 29 29 H 1.07994 * 122.53651 * 0.02562 * 17 16 14 30 30 H 1.08000 * 122.53378 * 180.20562 * 18 17 16 31 31 H 1.08003 * 125.20110 * 179.79513 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8748 -0.6800 -0.8910 11 6 4.0222 -2.6372 -0.0010 12 6 3.5579 -3.3348 1.2813 13 6 4.0590 -2.5408 2.4915 14 6 3.5470 -1.1012 2.3952 15 1 2.4574 -1.1000 2.4269 16 6 4.0843 -0.2983 3.5517 17 6 3.4409 -0.0770 4.6990 18 6 4.1359 0.6889 5.6191 19 6 5.3399 1.0972 5.2155 20 16 5.6526 0.4969 3.5921 21 8 3.9886 -0.5210 1.1659 22 1 -0.4849 0.8401 -0.0004 23 1 3.6234 -3.1647 -0.8674 24 1 5.1114 -2.6383 -0.0434 25 1 2.4688 -3.3779 1.2991 26 1 3.9634 -4.3460 1.3135 27 1 3.6865 -2.9994 3.4075 28 1 5.1490 -2.5408 2.5012 29 1 2.4538 -0.4681 4.8962 30 1 3.7322 0.9401 6.5888 31 1 6.0190 1.7033 5.7968 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306195110.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:05 Heat of formation + Delta-G solvation = -20.854704 kcal Electronic energy + Delta-G solvation = -15325.828825 eV Core-core repulsion = 12891.641743 eV Total energy + Delta-G solvation = -2434.187082 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.77952 -37.14674 -32.75449 -32.66887 -31.37844 -28.36863 -25.82273 -24.16862 -22.41563 -21.83283 -19.17855 -18.63668 -17.33402 -16.41709 -15.34826 -14.86038 -14.62113 -14.07965 -13.77688 -13.41355 -12.73591 -12.46454 -12.28431 -12.27998 -11.86444 -11.76494 -11.55347 -10.74893 -10.65394 -10.41099 -10.34086 -10.05141 -9.95005 -9.69798 -8.93777 -8.66149 -8.42604 -8.09846 -8.01081 -6.14730 -4.24365 1.36176 2.02772 2.44559 3.07466 3.43765 3.48705 3.59967 4.48566 4.67278 5.23086 5.29942 5.44828 5.58892 5.65953 5.76863 5.87341 6.01453 6.02870 6.19932 6.35579 6.41031 6.47150 6.66304 6.72337 6.75114 6.80767 6.84603 7.00373 7.28702 7.59713 8.14621 8.59083 8.86985 9.48919 10.95110 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.023400 B = 0.011384 C = 0.009317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.274888 B = 2459.104835 C = 3004.616925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.084 3.916 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.265 1.265 6 H -0.303 1.303 7 C -0.550 4.550 8 H 0.078 0.922 9 C 0.172 3.828 10 H 0.067 0.933 11 C -0.132 4.132 12 C -0.110 4.110 13 C -0.132 4.132 14 C 0.164 3.836 15 H 0.093 0.907 16 C -0.139 4.139 17 C -0.155 4.155 18 C -0.129 4.129 19 C -0.241 4.241 20 S 0.116 5.884 21 O -0.394 6.394 22 H 0.265 0.735 23 H 0.063 0.937 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.304 -1.194 8.314 12.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.120 4.120 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.189 1.189 6 H -0.231 1.231 7 C -0.587 4.587 8 H 0.096 0.904 9 C 0.117 3.883 10 H 0.085 0.915 11 C -0.169 4.169 12 C -0.148 4.148 13 C -0.170 4.170 14 C 0.104 3.896 15 H 0.111 0.889 16 C -0.257 4.257 17 C -0.184 4.184 18 C -0.161 4.161 19 C -0.377 4.377 20 S 0.380 5.620 21 O -0.315 6.315 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.492 -0.798 7.300 12.806 hybrid contribution -1.054 0.643 1.057 1.625 sum 9.438 -0.155 8.356 12.607 Atomic orbital electron populations 1.69949 1.06540 1.27404 1.48848 1.25006 0.94624 0.99701 0.92695 0.86485 0.79633 0.82320 0.79040 1.19959 1.18930 1.23142 1.21446 0.89489 0.94762 1.52972 0.90429 1.20316 0.94746 0.88843 0.84380 0.91496 1.21978 0.98611 0.98799 0.97557 1.21469 1.02119 0.96828 0.94378 1.22061 1.00406 0.95926 0.98603 1.20077 0.99084 0.88794 0.81613 0.88931 1.24719 0.97433 1.04049 0.99457 1.20049 1.01810 1.02836 0.93722 1.20063 0.94689 1.00458 1.00846 1.25613 1.02185 1.09598 1.00262 1.84292 1.17449 1.48666 1.11638 1.87797 1.74162 1.55946 1.13562 0.92547 0.91854 0.93734 0.90622 0.93430 0.92039 0.92399 0.84337 0.84828 0.82521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 2 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 3 Si 0.90 23.12 26.18 -169.99 -4.45 18.67 16 4 H -0.27 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.26 -6.69 6.54 56.52 0.37 -6.32 16 6 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 7 C -0.55 -14.81 7.17 -34.44 -0.25 -15.06 16 8 H 0.08 2.23 7.11 -52.49 -0.37 1.86 16 9 C 0.17 4.05 2.64 -27.84 -0.07 3.98 16 10 H 0.07 1.61 7.20 -51.93 -0.37 1.24 16 11 C -0.13 -2.59 5.59 -26.59 -0.15 -2.74 16 12 C -0.11 -2.02 5.78 -26.55 -0.15 -2.17 16 13 C -0.13 -2.36 5.40 -26.59 -0.14 -2.50 16 14 C 0.16 3.42 2.80 -27.84 -0.08 3.35 16 15 H 0.09 2.18 7.08 -51.93 -0.37 1.81 16 16 C -0.14 -2.63 5.52 -36.01 -0.20 -2.83 16 17 C -0.15 -2.63 10.05 -41.21 -0.41 -3.04 16 18 C -0.13 -1.90 10.18 -41.21 -0.42 -2.32 16 19 C -0.24 -3.47 11.23 29.04 0.33 -3.14 16 20 S 0.12 1.96 23.03 -107.50 -2.48 -0.51 16 21 O -0.39 -9.16 7.66 -35.23 -0.27 -9.43 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.08 1.52 6.85 -51.93 -0.36 1.16 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.14 2.18 8.06 -52.49 -0.42 1.76 16 30 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.16 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 264.85 15.07 3.99 3.99 Total: -1.00 -29.60 264.85 -8.10 -37.69 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.02 Total: -0.36 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -1.65 Total: -24.18 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.77 Total: -25.87 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.27 Total: -9.43 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.45 Total: 18.67 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.48 Total: -0.51 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.60 -8.10 -37.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306195110.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.840 kcal (2) G-P(sol) polarization free energy of solvation -29.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds