Wall clock time and date at job start Mon Mar 30 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 H 1.08993 * 109.48707 * 299.99490 * 9 7 2 11 11 C 1.53094 * 109.47646 * 179.97438 * 9 7 2 12 12 C 1.53177 * 109.16676 * 297.62561 * 11 9 7 13 13 C 1.53170 * 109.03776 * 303.02165 * 12 11 9 14 14 C 1.53095 * 109.16682 * 56.97652 * 13 12 11 15 15 H 1.09005 * 109.48067 * 62.37296 * 14 13 12 16 16 C 1.50696 * 109.48393 * 182.39550 * 14 13 12 17 17 C 1.33387 * 125.20659 * 264.71844 * 16 14 13 18 18 C 1.38431 * 114.91922 * 179.85858 * 17 16 14 19 19 C 1.33381 * 114.92058 * 0.43393 * 18 17 16 20 20 S 1.75882 * 109.59499 * 359.76775 * 19 18 17 21 21 O 1.42902 * 109.48166 * 60.02490 * 9 7 2 22 22 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.52446 * 57.53217 * 11 9 7 24 24 H 1.09004 * 109.52200 * 177.65664 * 11 9 7 25 25 H 1.09006 * 109.54244 * 62.88349 * 12 11 9 26 26 H 1.08997 * 109.54507 * 183.05937 * 12 11 9 27 27 H 1.09002 * 109.52284 * 176.88312 * 13 12 11 28 28 H 1.09001 * 109.52185 * 297.01021 * 13 12 11 29 29 H 1.07994 * 122.53651 * 0.02562 * 17 16 14 30 30 H 1.08000 * 122.53378 * 180.20562 * 18 17 16 31 31 H 1.08003 * 125.20110 * 179.79513 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8748 -0.6800 -0.8910 11 6 4.0222 -2.6372 -0.0010 12 6 3.5579 -3.3348 1.2813 13 6 4.0590 -2.5408 2.4915 14 6 3.5470 -1.1012 2.3952 15 1 2.4574 -1.1000 2.4269 16 6 4.0843 -0.2983 3.5517 17 6 3.4409 -0.0770 4.6990 18 6 4.1359 0.6889 5.6191 19 6 5.3399 1.0972 5.2155 20 16 5.6526 0.4969 3.5921 21 8 3.9886 -0.5210 1.1659 22 1 -0.4849 0.8401 -0.0004 23 1 3.6234 -3.1647 -0.8674 24 1 5.1114 -2.6383 -0.0434 25 1 2.4688 -3.3779 1.2991 26 1 3.9634 -4.3460 1.3135 27 1 3.6865 -2.9994 3.4075 28 1 5.1490 -2.5408 2.5012 29 1 2.4538 -0.4681 4.8962 30 1 3.7322 0.9401 6.5888 31 1 6.0190 1.7033 5.7968 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306195110.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:05 Heat of formation + Delta-G solvation = -38.253334 kcal Electronic energy + Delta-G solvation = -15326.583287 eV Core-core repulsion = 12891.641743 eV Total energy + Delta-G solvation = -2434.941543 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.42900 -38.45831 -34.75799 -34.33232 -33.05206 -29.88023 -27.66943 -25.60071 -24.05385 -23.33930 -20.81453 -20.04367 -19.06492 -18.08723 -17.00584 -16.42006 -16.23993 -15.81243 -15.53270 -14.93281 -14.57851 -14.11943 -13.74188 -13.58041 -13.42082 -13.16360 -13.14552 -12.75095 -12.42462 -11.99977 -11.84058 -11.78109 -11.59454 -11.43929 -10.89381 -10.72654 -10.08965 -9.46726 -9.36213 -8.36322 -6.46096 0.09832 0.75571 1.19780 1.33648 1.38704 1.50328 1.84601 2.34521 2.87640 3.27239 3.90979 4.09722 4.17337 4.24594 4.39850 4.44465 4.61110 4.66055 4.71875 4.87853 4.91662 5.10042 5.18149 5.22916 5.25397 5.37762 5.38241 5.51358 5.60813 5.65487 6.06883 6.62865 6.73497 7.29337 8.77326 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.023400 B = 0.011384 C = 0.009317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.274888 B = 2459.104835 C = 3004.616925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.038 3.962 3 Si 0.946 3.054 4 H -0.282 1.282 5 H -0.255 1.255 6 H -0.301 1.301 7 C -0.537 4.537 8 H 0.049 0.951 9 C 0.169 3.831 10 H 0.062 0.938 11 C -0.128 4.128 12 C -0.108 4.108 13 C -0.124 4.124 14 C 0.164 3.836 15 H 0.052 0.948 16 C -0.181 4.181 17 C -0.151 4.151 18 C -0.138 4.138 19 C -0.218 4.218 20 S 0.100 5.900 21 O -0.402 6.402 22 H 0.266 0.734 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.168 0.832 31 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.515 -0.925 9.869 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.162 4.162 3 Si 0.774 3.226 4 H -0.208 1.208 5 H -0.179 1.179 6 H -0.229 1.229 7 C -0.575 4.575 8 H 0.067 0.933 9 C 0.113 3.887 10 H 0.079 0.921 11 C -0.166 4.166 12 C -0.146 4.146 13 C -0.162 4.162 14 C 0.105 3.895 15 H 0.070 0.930 16 C -0.299 4.299 17 C -0.182 4.182 18 C -0.168 4.168 19 C -0.353 4.353 20 S 0.363 5.637 21 O -0.323 6.323 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.159 0.841 30 H 0.185 0.815 31 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 12.715 -0.540 8.849 15.501 hybrid contribution -1.740 0.531 0.666 1.937 sum 10.975 -0.009 9.515 14.526 Atomic orbital electron populations 1.70047 1.07870 1.28005 1.51419 1.25631 0.95083 1.02446 0.93061 0.85687 0.79004 0.79434 0.78440 1.20835 1.17865 1.22920 1.21671 0.91616 0.93298 1.50909 0.93275 1.20263 0.92277 0.91494 0.84622 0.92073 1.21925 0.99942 0.96197 0.98507 1.21453 1.00537 0.98667 0.93929 1.22007 1.01071 0.93979 0.99147 1.20034 0.97003 0.91104 0.81375 0.93011 1.24590 0.99340 1.06366 0.99572 1.20368 1.01942 1.02217 0.93666 1.20353 0.94684 0.99959 1.01792 1.26051 1.02380 1.08336 0.98567 1.84254 1.16343 1.49012 1.14080 1.87732 1.73798 1.56608 1.14207 0.92535 0.91578 0.91366 0.93353 0.90003 0.90336 0.91022 0.84128 0.81486 0.78840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.71 13.96 21.45 0.30 -57.41 16 2 C 0.04 2.20 5.47 84.65 0.46 2.67 16 3 Si 0.95 48.38 26.18 68.60 1.80 50.18 16 4 H -0.28 -14.69 7.11 99.48 0.71 -13.98 16 5 H -0.25 -12.47 6.54 99.48 0.65 -11.82 16 6 H -0.30 -15.14 7.11 99.48 0.71 -14.44 16 7 C -0.54 -29.73 7.17 25.60 0.18 -29.55 16 8 H 0.05 2.95 7.11 -2.91 -0.02 2.93 16 9 C 0.17 7.92 2.64 29.88 0.08 8.00 16 10 H 0.06 2.92 7.20 -2.39 -0.02 2.90 16 11 C -0.13 -4.87 5.59 30.68 0.17 -4.70 16 12 C -0.11 -3.82 5.78 30.71 0.18 -3.64 16 13 C -0.12 -4.26 5.40 30.68 0.17 -4.10 16 14 C 0.16 6.84 2.80 29.88 0.08 6.92 16 15 H 0.05 2.54 7.08 -2.38 -0.02 2.52 16 16 C -0.18 -6.69 5.52 24.59 0.14 -6.55 16 17 C -0.15 -4.91 10.05 21.22 0.21 -4.70 16 18 C -0.14 -3.58 10.18 21.22 0.22 -3.37 16 19 C -0.22 -5.43 11.23 66.72 0.75 -4.68 16 20 S 0.10 3.16 23.03 -56.49 -1.30 1.86 16 21 O -0.40 -18.55 7.66 -148.98 -1.14 -19.69 16 22 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 23 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 24 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.05 1.96 6.85 -2.38 -0.02 1.94 16 26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16 31 H 0.19 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -64.77 264.85 3.35 -61.42 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 1.06 Total: 7.33 kcal Atomic # 6 Polarization: -46.33 SS G_CDS: 2.64 Total: -43.70 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.30 Total: -57.41 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -1.14 Total: -19.69 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 1.80 Total: 50.18 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.30 Total: 1.86 kcal Total: -64.77 3.35 -61.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306195110.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.168 kcal (2) G-P(sol) polarization free energy of solvation -64.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds