Wall clock time and date at job start Mon Mar 30 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99895 * 2 1 4 4 H 1.48499 * 109.46998 * 270.00178 * 3 2 1 5 5 H 1.48498 * 109.47246 * 30.00099 * 3 2 1 6 6 H 1.48503 * 109.47215 * 149.99764 * 3 2 1 7 7 C 1.37880 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00173 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99807 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.48784 * 300.02880 * 9 7 2 11 11 C 1.53091 * 109.48010 * 179.97438 * 9 7 2 12 12 C 1.53176 * 109.21206 * 182.43847 * 11 9 7 13 13 C 1.53174 * 109.03724 * 56.94941 * 12 11 9 14 14 C 1.53084 * 109.16456 * 303.01556 * 13 12 11 15 15 H 1.09000 * 109.48607 * 297.61643 * 14 13 12 16 16 C 1.50703 * 109.48589 * 177.59257 * 14 13 12 17 17 C 1.33381 * 125.20339 * 99.71231 * 16 14 13 18 18 C 1.38423 * 114.91901 * 179.86500 * 17 16 14 19 19 C 1.33381 * 114.92318 * 0.43354 * 18 17 16 20 20 S 1.75886 * 109.59538 * 359.77094 * 19 18 17 21 21 O 1.42906 * 109.41372 * 57.61236 * 14 13 12 22 22 H 0.96997 * 120.00102 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.52401 * 62.50000 * 11 9 7 24 24 H 1.09004 * 109.52068 * 302.37645 * 11 9 7 25 25 H 1.09004 * 109.53956 * 176.81728 * 12 11 9 26 26 H 1.08995 * 109.54545 * 297.07504 * 12 11 9 27 27 H 1.09007 * 109.52410 * 62.92341 * 13 12 11 28 28 H 1.09003 * 109.52246 * 183.11215 * 13 12 11 29 29 H 1.08003 * 122.54249 * 0.03207 * 17 16 14 30 30 H 1.08001 * 122.53930 * 180.20719 * 18 17 16 31 31 H 1.08003 * 125.20788 * 179.74977 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6237 -2.5568 0.8899 11 6 2.2458 -3.6629 0.0005 12 6 1.4748 -4.9850 -0.0610 13 6 0.5806 -4.9845 -1.3047 14 6 -0.3508 -3.7707 -1.2536 15 1 -0.9989 -3.8463 -0.3805 16 6 -1.1930 -3.7304 -2.5026 17 6 -2.4549 -4.1528 -2.5931 18 6 -3.0283 -4.0132 -3.8452 19 6 -2.2292 -3.4857 -4.7738 20 16 -0.6596 -3.1262 -4.0661 21 8 0.4294 -2.5766 -1.1662 22 1 -0.4850 0.8400 0.0004 23 1 2.8431 -3.6316 0.9118 24 1 2.9007 -3.5823 -0.8671 25 1 2.1787 -5.8153 -0.1183 26 1 0.8579 -5.0893 0.8315 27 1 1.2010 -4.9302 -2.1994 28 1 -0.0130 -5.8985 -1.3269 29 1 -2.9897 -4.5696 -1.7525 30 1 -4.0446 -4.3122 -4.0554 31 1 -2.5036 -3.3070 -5.8029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306195112.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:07 Heat of formation + Delta-G solvation = -41.701493 kcal Electronic energy + Delta-G solvation = -14976.400708 eV Core-core repulsion = 12541.309642 eV Total energy + Delta-G solvation = -2435.091067 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.11856 -38.35241 -34.97557 -34.15507 -32.76271 -29.83716 -27.43677 -25.54497 -24.02917 -23.13359 -21.07787 -19.96846 -18.75440 -18.11494 -16.72439 -16.47007 -16.20581 -15.97723 -15.31843 -14.79798 -14.57165 -13.94288 -13.65550 -13.52030 -13.13825 -13.01997 -12.87308 -12.66489 -12.49401 -12.13321 -11.85362 -11.81104 -11.59839 -11.35199 -10.87670 -10.59846 -9.90414 -9.41292 -9.32512 -8.15626 -6.36087 0.16119 0.82147 1.28536 1.39484 1.41400 1.51451 1.89775 2.39758 3.00155 3.51078 3.98075 4.06468 4.11217 4.27122 4.39227 4.43471 4.48379 4.69067 4.74545 4.86248 4.94793 5.05735 5.14486 5.17172 5.25904 5.28028 5.45451 5.55023 5.66777 5.76871 6.19788 6.65793 7.16007 7.39929 8.91923 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.008883 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.204441 B = 3151.374809 C = 3878.346632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.551 4.551 8 H 0.065 0.935 9 C 0.216 3.784 10 H -0.019 1.019 11 C -0.138 4.138 12 C -0.114 4.114 13 C -0.130 4.130 14 C 0.142 3.858 15 H 0.045 0.955 16 C -0.172 4.172 17 C -0.149 4.149 18 C -0.136 4.136 19 C -0.224 4.224 20 S 0.085 5.915 21 O -0.378 6.378 22 H 0.261 0.739 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.151 0.849 30 H 0.170 0.830 31 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 -9.799 -6.168 12.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.177 4.177 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.588 4.588 8 H 0.083 0.917 9 C 0.160 3.840 10 H -0.001 1.001 11 C -0.176 4.176 12 C -0.151 4.151 13 C -0.168 4.168 14 C 0.082 3.918 15 H 0.063 0.937 16 C -0.289 4.289 17 C -0.179 4.179 18 C -0.166 4.166 19 C -0.359 4.359 20 S 0.349 5.651 21 O -0.298 6.298 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.106 0.894 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.168 0.832 30 H 0.187 0.813 31 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.318 -8.934 -6.862 11.501 hybrid contribution -0.994 0.380 0.887 1.385 sum -3.311 -8.554 -5.975 10.947 Atomic orbital electron populations 1.70174 1.07623 1.27327 1.48070 1.25928 0.95606 1.02960 0.93197 0.85567 0.79017 0.78804 0.78317 1.20256 1.20505 1.18429 1.21435 0.93071 0.91249 1.53088 0.91663 1.19602 0.87379 0.93426 0.83566 1.00122 1.22124 0.98779 0.95438 1.01224 1.21606 0.98675 0.97427 0.97439 1.22110 0.98159 0.97653 0.98910 1.20329 0.91621 0.88134 0.91738 0.93675 1.24480 0.99296 1.06885 0.98255 1.20354 0.93204 1.04360 1.00031 1.20369 1.02273 1.02345 0.91585 1.26034 0.96711 1.08164 1.05018 1.84583 1.15726 1.62451 1.02331 1.88298 1.58405 1.37344 1.45740 0.93029 0.91629 0.93032 0.89435 0.92033 0.92158 0.89344 0.83177 0.81255 0.79245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.84 12.84 21.45 0.28 -54.56 16 2 C 0.03 1.50 5.40 84.66 0.46 1.95 16 3 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.55 -31.85 8.80 25.60 0.23 -31.62 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.22 11.49 2.50 29.88 0.07 11.57 16 10 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 11 C -0.14 -5.82 5.35 30.68 0.16 -5.65 16 12 C -0.11 -3.84 6.03 30.71 0.19 -3.65 16 13 C -0.13 -4.49 5.40 30.68 0.17 -4.33 16 14 C 0.14 6.01 3.08 29.88 0.09 6.10 16 15 H 0.05 1.98 8.12 -2.39 -0.02 1.96 16 16 C -0.17 -6.57 5.48 24.59 0.13 -6.44 16 17 C -0.15 -4.73 10.04 21.21 0.21 -4.51 16 18 C -0.14 -3.59 10.18 21.21 0.22 -3.38 16 19 C -0.22 -6.12 11.23 66.72 0.75 -5.37 16 20 S 0.09 3.08 23.12 -56.49 -1.31 1.77 16 21 O -0.38 -20.13 9.24 -148.98 -1.38 -21.51 16 22 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 23 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 24 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 25 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 28 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 30 H 0.17 3.21 8.06 -2.91 -0.02 3.18 16 31 H 0.19 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -67.45 274.90 3.40 -64.05 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.10 Total: 8.77 kcal Atomic # 6 Polarization: -48.00 SS G_CDS: 2.68 Total: -45.33 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.28 Total: -54.56 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -1.38 Total: -21.51 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.31 Total: 1.77 kcal Total: -67.45 3.40 -64.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306195112.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.351 kcal (2) G-P(sol) polarization free energy of solvation -67.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds