Wall clock time and date at job start Mon Mar 30 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47225 * 2 1 4 4 Cl 1.80300 * 109.46948 * 120.00546 * 2 1 3 5 5 C 1.50700 * 109.46891 * 240.00160 * 2 1 3 6 6 O 1.21311 * 120.00161 * 101.99563 * 5 2 1 7 7 C 1.46870 * 120.00242 * 281.99720 * 5 2 1 8 8 C 1.40310 * 119.92127 * 187.04460 * 7 5 2 9 9 C 1.36213 * 120.07687 * 180.02562 * 8 7 5 10 10 C 1.40964 * 119.92075 * 0.25089 * 9 8 7 11 11 C 1.40984 * 120.07836 * 179.72227 * 10 9 8 12 12 H 1.07999 * 120.00224 * 208.37090 * 11 10 9 13 13 C 1.40337 * 119.99903 * 28.36839 * 11 10 9 14 14 N 1.30581 * 120.00115 * 12.62447 * 13 11 10 15 15 Si 1.86804 * 119.99980 * 192.61869 * 13 11 10 16 16 H 1.48502 * 109.46736 * 90.00081 * 15 13 11 17 17 H 1.48498 * 109.46978 * 210.00032 * 15 13 11 18 18 H 1.48499 * 109.47223 * 330.00461 * 15 13 11 19 19 C 1.40969 * 119.84308 * 359.45247 * 10 9 8 20 20 C 1.36208 * 119.92189 * 0.54919 * 19 10 9 21 21 H 1.08997 * 109.47615 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47086 * 300.00052 * 1 2 3 23 23 H 1.09009 * 109.46879 * 59.99483 * 1 2 3 24 24 H 1.08002 * 119.96163 * 359.97438 * 8 7 5 25 25 H 1.08001 * 120.04067 * 179.97438 * 9 8 7 26 26 H 0.96998 * 120.00092 * 180.02562 * 14 13 11 27 27 H 1.07999 * 120.04129 * 180.25024 * 19 10 9 28 28 H 1.07996 * 119.96257 * 179.72445 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 17 2.1310 -0.8501 1.4721 5 6 2.0323 -0.7104 -1.2305 6 8 2.4403 -0.0700 -2.1766 7 6 2.0278 -2.1781 -1.2844 8 6 2.6298 -2.8406 -2.3649 9 6 2.6271 -4.2016 -2.4184 10 6 2.0138 -4.9445 -1.3893 11 6 2.0038 -6.3532 -1.4442 12 1 1.2044 -6.9064 -0.9738 13 6 3.0327 -7.0367 -2.1103 14 7 4.1174 -6.4009 -2.4629 15 14 2.8506 -8.8562 -2.4925 16 1 2.2161 -9.0209 -3.8250 17 1 4.1902 -9.4970 -2.4995 18 1 2.0007 -9.4969 -1.4569 19 6 1.4154 -4.2756 -0.3021 20 6 1.4218 -2.9144 -0.2551 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5140 -0.8900 24 1 3.0953 -2.2707 -3.1555 25 1 3.0903 -4.7110 -3.2505 26 1 4.8284 -6.8733 -2.9236 27 1 0.9482 -4.8417 0.4901 28 1 0.9597 -2.4012 0.5752 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306537697.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:37 Heat of formation + Delta-G solvation = -53.506842 kcal Electronic energy + Delta-G solvation = -14287.605074 eV Core-core repulsion = 11714.125288 eV Total energy + Delta-G solvation = -2573.479786 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.68007 -38.84423 -37.19614 -35.69523 -33.63177 -31.90773 -31.22885 -28.00218 -25.62664 -23.36667 -22.73237 -20.52100 -19.45052 -17.79314 -17.13651 -16.77499 -15.93741 -15.75742 -15.42895 -14.91092 -14.48184 -14.10055 -13.87546 -13.60296 -13.39093 -13.07286 -12.88418 -12.77580 -12.51743 -12.44248 -11.91459 -11.85461 -11.48713 -11.18758 -10.98822 -10.32641 -9.56930 -9.36186 -8.79508 -6.53659 0.07093 1.00582 1.19610 1.37278 1.40644 1.52816 1.86820 2.14405 2.70795 3.07438 3.63606 3.84548 3.88865 4.36579 4.39951 4.59405 4.75279 4.79210 4.96376 5.00945 5.12435 5.24685 5.26179 5.59220 5.80061 5.97028 6.02024 6.20325 6.53965 6.69989 6.73109 6.87182 8.14375 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.043734 B = 0.006413 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.074259 B = 4364.863437 C = 4647.531451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.037 4.037 3 H 0.136 0.864 4 Cl -0.159 7.159 5 C 0.400 3.600 6 O -0.521 6.521 7 C -0.321 4.321 8 C -0.051 4.051 9 C -0.203 4.203 10 C 0.107 3.893 11 C -0.466 4.466 12 H 0.093 0.907 13 C 0.032 3.968 14 N -0.804 5.804 15 Si 0.992 3.008 16 H -0.260 1.260 17 H -0.267 1.267 18 H -0.251 1.251 19 C -0.254 4.254 20 C -0.023 4.023 21 H 0.071 0.929 22 H 0.105 0.895 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.296 0.704 27 H 0.112 0.888 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.357 4.385 4.761 8.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.081 4.081 3 H 0.153 0.847 4 Cl -0.133 7.133 5 C 0.287 3.713 6 O -0.404 6.404 7 C -0.323 4.323 8 C -0.070 4.070 9 C -0.222 4.222 10 C 0.104 3.896 11 C -0.493 4.493 12 H 0.111 0.889 13 C -0.187 4.187 14 N -0.428 5.428 15 Si 0.812 3.188 16 H -0.185 1.185 17 H -0.192 1.192 18 H -0.175 1.175 19 C -0.273 4.273 20 C -0.041 4.041 21 H 0.090 0.910 22 H 0.124 0.876 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.122 0.878 26 H 0.107 0.893 27 H 0.130 0.870 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.870 4.627 4.310 7.982 hybrid contribution 0.498 -0.801 -0.319 0.996 sum -4.372 3.826 3.992 7.049 Atomic orbital electron populations 1.22142 0.88472 1.04741 1.05336 1.24668 1.00422 0.98767 0.84245 0.84653 1.98715 1.90106 1.81181 1.43293 1.22411 0.72954 0.89178 0.86764 1.90448 1.41034 1.69722 1.39244 1.19607 1.17492 0.93205 1.01981 1.20726 0.95719 0.94421 0.96107 1.20942 1.07852 0.92705 1.00714 1.18229 0.87647 0.94215 0.89536 1.20234 1.07809 0.92076 1.29224 0.88872 1.27065 0.93217 1.06449 0.91960 1.69759 1.05056 1.41201 1.26788 0.85034 0.79130 0.74671 0.79976 1.18483 1.19160 1.17456 1.21019 1.11780 0.94692 0.99801 1.21364 0.93625 0.93688 0.95424 0.91018 0.87621 0.89674 0.88935 0.87819 0.89299 0.87012 0.84016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.13 71.98 0.66 -2.67 15 2 C -0.04 -1.05 3.49 29.85 0.10 -0.95 15 3 H 0.14 3.32 8.14 -2.39 -0.02 3.30 15 4 Cl -0.16 -4.78 24.77 -2.72 -0.07 -4.85 15 5 C 0.40 15.83 6.16 27.95 0.17 16.01 15 6 O -0.52 -23.29 17.09 -3.13 -0.05 -23.35 15 7 C -0.32 -14.40 5.71 -20.01 -0.11 -14.51 15 8 C -0.05 -2.55 9.52 22.30 0.21 -2.34 15 9 C -0.20 -10.74 8.60 22.47 0.19 -10.55 15 10 C 0.11 5.56 5.55 -21.27 -0.12 5.44 15 11 C -0.47 -23.38 9.05 23.45 0.21 -23.17 15 12 H 0.09 4.36 7.88 -2.91 -0.02 4.34 15 13 C 0.03 1.49 5.22 85.39 0.45 1.93 15 14 N -0.80 -40.13 10.90 21.89 0.24 -39.89 15 15 Si 0.99 35.12 29.58 68.60 2.03 37.15 15 16 H -0.26 -8.98 7.11 99.48 0.71 -8.28 15 17 H -0.27 -9.06 7.11 99.48 0.71 -8.35 15 18 H -0.25 -8.51 7.11 99.48 0.71 -7.81 15 19 C -0.25 -11.78 9.73 22.47 0.22 -11.56 15 20 C -0.02 -0.96 7.63 22.30 0.17 -0.79 15 21 H 0.07 1.74 6.45 -2.39 -0.02 1.72 15 22 H 0.11 1.70 8.14 -2.38 -0.02 1.68 15 23 H 0.08 1.76 8.14 -2.38 -0.02 1.74 15 24 H 0.09 4.58 7.64 -2.91 -0.02 4.56 15 25 H 0.10 5.70 6.24 -2.91 -0.02 5.68 15 26 H 0.30 13.22 8.29 -92.71 -0.77 12.45 15 27 H 0.11 4.74 8.06 -2.91 -0.02 4.72 15 28 H 0.14 4.99 4.09 -2.91 -0.01 4.98 15 Total: -1.00 -58.83 256.51 5.48 -53.35 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 1.18 Total: 20.74 kcal Atomic # 6 Polarization: -45.31 SS G_CDS: 2.15 Total: -43.15 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.24 Total: -39.89 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.05 Total: -23.35 kcal Atomic # 14 Polarization: 35.12 SS G_CDS: 2.03 Total: 37.15 kcal Atomic # 17 Polarization: -4.78 SS G_CDS: -0.07 Total: -4.85 kcal Total: -58.83 5.48 -53.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306537697.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.159 kcal (2) G-P(sol) polarization free energy of solvation -58.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds