Wall clock time and date at job start Mon Mar 30 2020 05:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30913 * 1 3 3 Si 1.86797 * 120.00456 * 2 1 4 4 H 1.48503 * 109.47154 * 270.00419 * 3 2 1 5 5 H 1.48499 * 109.46835 * 29.99884 * 3 2 1 6 6 H 1.48502 * 109.47427 * 150.00019 * 3 2 1 7 7 C 1.39875 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00570 * 200.00910 * 7 2 1 9 9 C 1.40871 * 119.99875 * 20.01339 * 7 2 1 10 10 C 1.42258 * 120.08405 * 216.75845 * 9 7 2 11 11 S 1.75911 * 130.43645 * 0.02562 * 10 9 7 12 12 C 1.75304 * 92.17185 * 180.02562 * 11 10 9 13 13 C 1.31895 * 111.30507 * 0.02562 * 12 11 10 14 14 C 1.39273 * 119.77959 * 180.02562 * 10 9 7 15 15 C 1.41523 * 119.08975 * 359.96471 * 14 10 9 16 16 C 1.38020 * 120.90576 * 0.07031 * 15 14 10 17 17 O 1.36033 * 119.68579 * 179.97438 * 16 15 14 18 18 C 1.38630 * 120.62193 * 359.92717 * 16 15 14 19 19 F 1.35099 * 120.11817 * 180.02562 * 18 16 15 20 20 H 0.97001 * 119.99677 * 0.02562 * 1 2 3 21 21 H 1.07995 * 124.34832 * 180.02562 * 12 11 10 22 22 H 1.08000 * 122.56136 * 180.02562 * 13 12 11 23 23 H 1.07997 * 119.54980 * 179.97438 * 15 14 10 24 24 H 0.96700 * 113.99886 * 269.93859 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6176 0.0000 4 1 2.4907 2.0464 -1.4001 5 1 1.4407 2.6526 0.7000 6 1 3.5408 1.4400 0.7000 7 6 2.0084 -1.2114 0.0005 8 1 3.0396 -1.2396 0.3206 9 6 1.3678 -2.3947 -0.4165 10 6 1.6534 -3.6273 0.2337 11 16 2.7415 -3.9883 1.5680 12 6 2.3219 -5.6901 1.5373 13 6 1.4359 -5.9483 0.5951 14 6 1.0168 -4.7935 -0.1841 15 6 0.0922 -4.7273 -1.2535 16 6 -0.1809 -3.5289 -1.8814 17 8 -1.0738 -3.4940 -2.9072 18 6 0.4453 -2.3605 -1.4760 19 9 0.1700 -1.1930 -2.0975 20 1 -0.4850 0.8401 -0.0004 21 1 2.7357 -6.4318 2.2043 22 1 1.0497 -6.9410 0.4166 23 1 -0.4054 -5.6271 -1.5838 24 1 -0.6779 -3.6348 -3.7781 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306574673.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:42 Heat of formation + Delta-G solvation = -51.799977 kcal Electronic energy + Delta-G solvation = -14414.084326 eV Core-core repulsion = 11719.261956 eV Total energy + Delta-G solvation = -2694.822369 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.00736 -38.34276 -36.45359 -34.48033 -32.55870 -29.67665 -27.45749 -25.57094 -22.37628 -21.50681 -19.98880 -17.67741 -16.92604 -16.68954 -15.72232 -15.04420 -14.86813 -14.42963 -13.64647 -13.43996 -12.90997 -12.50029 -12.34409 -12.10834 -11.79597 -11.45063 -11.20402 -10.95611 -10.86649 -10.44961 -9.91319 -9.68892 -9.42238 -9.10776 -8.35510 -7.16515 -7.04443 -6.75919 -4.60053 1.74883 2.30087 2.53078 2.94549 3.03620 3.05503 3.07313 3.28695 3.85016 4.36746 4.88605 5.14924 5.52890 5.81905 5.94279 6.15265 6.42022 6.58926 6.83176 6.95058 7.10448 7.21949 7.33927 7.48249 7.67796 8.05722 8.39516 8.54511 8.68266 10.01222 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.022980 B = 0.012341 C = 0.008339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.159057 B = 2268.339199 C = 3356.752654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.078 3.922 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.456 4.456 8 H 0.090 0.910 9 C 0.127 3.873 10 C -0.186 4.186 11 S 0.064 5.936 12 C -0.216 4.216 13 C -0.121 4.121 14 C -0.050 4.050 15 C -0.214 4.214 16 C 0.105 3.895 17 O -0.500 6.500 18 C 0.006 3.994 19 F -0.133 7.133 20 H 0.288 0.712 21 H 0.152 0.848 22 H 0.129 0.871 23 H 0.110 0.890 24 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.099 -4.690 -0.369 5.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.108 0.892 9 C 0.120 3.880 10 C -0.301 4.301 11 S 0.326 5.674 12 C -0.350 4.350 13 C -0.153 4.153 14 C -0.057 4.057 15 C -0.237 4.237 16 C 0.059 3.941 17 O -0.308 6.308 18 C -0.019 4.019 19 F -0.112 7.112 20 H 0.099 0.901 21 H 0.170 0.830 22 H 0.146 0.854 23 H 0.128 0.872 24 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.460 -3.569 1.028 5.077 hybrid contribution -0.523 -0.038 -1.312 1.413 sum 2.937 -3.608 -0.284 4.661 Atomic orbital electron populations 1.69803 1.07870 1.30458 1.30094 1.25857 0.94708 1.01504 0.92437 0.86197 0.80432 0.80038 0.79612 1.18931 1.20045 1.18348 1.19348 0.99254 0.91115 1.38667 0.89247 1.16692 0.91237 0.90836 0.89241 1.22414 1.07361 0.97206 1.03128 1.83618 1.46971 1.00485 1.36306 1.24930 1.05169 1.00346 1.04509 1.20850 0.99410 0.98267 0.96781 1.18797 0.98377 0.91296 0.97243 1.20104 1.05310 0.96094 1.02191 1.17956 0.92231 0.91990 0.91944 1.84845 1.34498 1.94909 1.16559 1.17699 1.05421 0.80592 0.98224 1.91321 1.92692 1.46425 1.80722 0.90081 0.83002 0.85354 0.87219 0.77186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.21 11.12 55.54 0.62 -19.60 14 2 C 0.08 1.96 4.48 -17.33 -0.08 1.89 14 3 Si 0.91 18.84 29.60 -169.99 -5.03 13.81 14 4 H -0.26 -5.44 7.11 56.52 0.40 -5.03 14 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 14 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 14 7 C -0.46 -11.96 8.64 -37.97 -0.33 -12.28 14 8 H 0.09 2.24 7.92 -52.49 -0.42 1.83 14 9 C 0.13 3.36 5.42 -106.49 -0.58 2.78 14 10 C -0.19 -4.49 6.36 -37.65 -0.24 -4.73 14 11 S 0.06 1.29 22.95 -107.50 -2.47 -1.17 14 12 C -0.22 -3.75 11.03 28.83 0.32 -3.43 14 13 C -0.12 -2.24 10.39 -38.60 -0.40 -2.64 14 14 C -0.05 -1.11 6.03 -105.38 -0.64 -1.75 14 15 C -0.21 -4.76 10.02 -38.41 -0.38 -5.14 14 16 C 0.10 2.49 6.66 -39.52 -0.26 2.23 14 17 O -0.50 -10.51 13.34 -19.84 -0.26 -10.78 14 18 C 0.01 0.15 6.68 -38.57 -0.26 -0.11 14 19 F -0.13 -3.63 14.06 2.25 0.03 -3.60 14 20 H 0.29 6.99 8.30 -40.82 -0.34 6.65 14 21 H 0.15 2.07 8.06 -52.49 -0.42 1.64 14 22 H 0.13 1.97 8.06 -52.49 -0.42 1.54 14 23 H 0.11 2.14 8.06 -52.49 -0.42 1.71 14 24 H 0.37 5.78 9.06 45.56 0.41 6.19 14 LS Contribution 237.57 15.07 3.58 3.58 Total: -1.00 -29.54 237.57 -6.79 -36.33 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -0.41 Total: 4.62 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -2.85 Total: -23.20 kcal Atomic # 7 Polarization: -20.21 SS G_CDS: 0.62 Total: -19.60 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.26 Total: -10.78 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.03 Total: -3.60 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.47 Total: -1.17 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.54 -6.79 -36.33 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306574673.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.470 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds