Wall clock time and date at job start Mon Mar 30 2020 05:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30913 * 1 3 3 Si 1.86797 * 120.00456 * 2 1 4 4 H 1.48503 * 109.47154 * 270.00419 * 3 2 1 5 5 H 1.48499 * 109.46835 * 29.99884 * 3 2 1 6 6 H 1.48502 * 109.47427 * 150.00019 * 3 2 1 7 7 C 1.39875 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00570 * 200.00910 * 7 2 1 9 9 C 1.40871 * 119.99875 * 20.01339 * 7 2 1 10 10 C 1.42258 * 120.08405 * 216.75845 * 9 7 2 11 11 S 1.75911 * 130.43645 * 0.02562 * 10 9 7 12 12 C 1.75304 * 92.17185 * 180.02562 * 11 10 9 13 13 C 1.31895 * 111.30507 * 0.02562 * 12 11 10 14 14 C 1.39273 * 119.77959 * 180.02562 * 10 9 7 15 15 C 1.41523 * 119.08975 * 359.96471 * 14 10 9 16 16 C 1.38020 * 120.90576 * 0.07031 * 15 14 10 17 17 O 1.36033 * 119.68579 * 179.97438 * 16 15 14 18 18 C 1.38630 * 120.62193 * 359.92717 * 16 15 14 19 19 F 1.35099 * 120.11817 * 180.02562 * 18 16 15 20 20 H 0.97001 * 119.99677 * 0.02562 * 1 2 3 21 21 H 1.07995 * 124.34832 * 180.02562 * 12 11 10 22 22 H 1.08000 * 122.56136 * 180.02562 * 13 12 11 23 23 H 1.07997 * 119.54980 * 179.97438 * 15 14 10 24 24 H 0.96700 * 113.99886 * 269.93859 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6176 0.0000 4 1 2.4907 2.0464 -1.4001 5 1 1.4407 2.6526 0.7000 6 1 3.5408 1.4400 0.7000 7 6 2.0084 -1.2114 0.0005 8 1 3.0396 -1.2396 0.3206 9 6 1.3678 -2.3947 -0.4165 10 6 1.6534 -3.6273 0.2337 11 16 2.7415 -3.9883 1.5680 12 6 2.3219 -5.6901 1.5373 13 6 1.4359 -5.9483 0.5951 14 6 1.0168 -4.7935 -0.1841 15 6 0.0922 -4.7273 -1.2535 16 6 -0.1809 -3.5289 -1.8814 17 8 -1.0738 -3.4940 -2.9072 18 6 0.4453 -2.3605 -1.4760 19 9 0.1700 -1.1930 -2.0975 20 1 -0.4850 0.8401 -0.0004 21 1 2.7357 -6.4318 2.2043 22 1 1.0497 -6.9410 0.4166 23 1 -0.4054 -5.6271 -1.5838 24 1 -0.6779 -3.6348 -3.7781 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306574673.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:41 Heat of formation + Delta-G solvation = -71.141691 kcal Electronic energy + Delta-G solvation = -14414.923045 eV Core-core repulsion = 11719.261956 eV Total energy + Delta-G solvation = -2695.661089 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.98863 -40.07536 -38.12356 -36.24419 -34.27994 -31.48956 -29.15886 -27.43199 -24.04125 -23.29891 -21.63704 -19.45100 -18.74878 -18.36995 -17.47873 -16.84164 -16.60549 -16.23567 -15.38239 -15.09130 -14.65376 -14.25220 -14.05183 -13.75483 -13.50452 -13.28310 -12.86792 -12.68183 -12.54364 -12.08048 -11.51706 -11.37470 -11.18104 -10.90457 -10.09206 -8.94272 -8.88030 -8.47726 -6.53127 0.10315 0.50999 0.95715 1.30028 1.35011 1.45271 1.47412 1.65127 2.14058 2.57884 3.12551 3.41353 4.02677 4.09563 4.40915 4.58039 4.83220 5.03534 5.08966 5.17314 5.37183 5.47893 5.60319 5.73336 5.94384 6.18193 6.59485 6.66623 6.98846 8.18962 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.022980 B = 0.012341 C = 0.008339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.159057 B = 2268.339199 C = 3356.752654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.250 1.250 7 C -0.489 4.489 8 H 0.088 0.912 9 C 0.101 3.899 10 C -0.220 4.220 11 S 0.057 5.943 12 C -0.189 4.189 13 C -0.130 4.130 14 C -0.059 4.059 15 C -0.208 4.208 16 C 0.102 3.898 17 O -0.505 6.505 18 C -0.040 4.040 19 F -0.149 7.149 20 H 0.292 0.708 21 H 0.201 0.799 22 H 0.170 0.830 23 H 0.142 0.858 24 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 -6.609 0.295 7.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.181 4.181 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.189 1.189 6 H -0.173 1.173 7 C -0.517 4.517 8 H 0.106 0.894 9 C 0.094 3.906 10 C -0.335 4.335 11 S 0.319 5.681 12 C -0.322 4.322 13 C -0.160 4.160 14 C -0.067 4.067 15 C -0.229 4.229 16 C 0.055 3.945 17 O -0.317 6.317 18 C -0.065 4.065 19 F -0.128 7.128 20 H 0.102 0.898 21 H 0.218 0.782 22 H 0.187 0.813 23 H 0.160 0.840 24 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.130 -5.514 1.676 7.090 hybrid contribution -0.740 0.323 -1.514 1.716 sum 3.390 -5.191 0.162 6.202 Atomic orbital electron populations 1.69863 1.09445 1.31403 1.32053 1.26728 0.95313 1.04698 0.91323 0.85206 0.79424 0.75723 0.79592 1.18920 1.18895 1.17302 1.19540 0.99414 0.92191 1.40515 0.89440 1.17064 0.91736 0.92151 0.89608 1.22826 1.08770 0.97269 1.04642 1.83588 1.46213 1.03445 1.34813 1.25442 1.03674 0.98927 1.04177 1.21117 0.99858 0.98658 0.96383 1.19390 0.97691 0.92353 0.97267 1.20501 1.04578 0.96465 1.01404 1.18091 0.91944 0.91756 0.92690 1.84759 1.34373 1.94945 1.17599 1.18138 1.07580 0.81063 0.99673 1.91252 1.93036 1.47462 1.81087 0.89755 0.78194 0.81252 0.84030 0.74321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -44.47 11.12 21.82 0.24 -44.23 14 2 C 0.04 1.97 4.48 85.23 0.38 2.35 14 3 Si 0.98 39.49 29.60 68.60 2.03 41.52 14 4 H -0.26 -10.52 7.11 99.48 0.71 -9.82 14 5 H -0.26 -10.05 7.11 99.48 0.71 -9.35 14 6 H -0.25 -9.51 7.11 99.48 0.71 -8.81 14 7 C -0.49 -26.58 8.64 23.31 0.20 -26.38 14 8 H 0.09 4.57 7.92 -2.91 -0.02 4.55 14 9 C 0.10 5.51 5.42 -21.08 -0.11 5.40 14 10 C -0.22 -10.64 6.36 23.52 0.15 -10.49 14 11 S 0.06 2.24 22.95 -56.49 -1.30 0.95 14 12 C -0.19 -5.73 11.03 66.98 0.74 -5.00 14 13 C -0.13 -4.24 10.39 23.30 0.24 -4.00 14 14 C -0.06 -2.52 6.03 -20.35 -0.12 -2.64 14 15 C -0.21 -8.85 10.02 23.03 0.23 -8.62 14 16 C 0.10 4.83 6.66 22.31 0.15 4.98 14 17 O -0.51 -20.94 13.34 -93.92 -1.25 -22.20 14 18 C -0.04 -2.19 6.68 22.92 0.15 -2.04 14 19 F -0.15 -8.54 14.06 44.97 0.63 -7.91 14 20 H 0.29 14.73 8.30 -92.71 -0.77 13.96 14 21 H 0.20 4.15 8.06 -2.91 -0.02 4.13 14 22 H 0.17 4.17 8.06 -2.91 -0.02 4.15 14 23 H 0.14 5.02 8.06 -2.91 -0.02 5.00 14 24 H 0.40 11.92 9.06 -74.06 -0.67 11.25 14 Total: -1.00 -66.19 237.57 2.95 -63.23 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.59 Total: 15.07 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 2.01 Total: -46.43 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.24 Total: -44.23 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -1.25 Total: -22.20 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 0.63 Total: -7.91 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.30 Total: 0.95 kcal Total: -66.19 2.95 -63.23 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306574673.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.907 kcal (2) G-P(sol) polarization free energy of solvation -66.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds