Wall clock time and date at job start Mon Mar 30 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20764 * 119.99676 * 2 1 4 4 C 1.50700 * 120.00212 * 179.97438 * 2 1 3 5 5 C 1.50703 * 109.47100 * 179.97438 * 4 2 1 6 6 C 1.37754 * 120.13537 * 269.97659 * 5 4 2 7 7 Cl 1.73594 * 119.88803 * 0.04682 * 6 5 4 8 8 C 1.38734 * 120.21941 * 180.02562 * 6 5 4 9 9 C 1.38632 * 120.48932 * 0.02562 * 8 6 5 10 10 C 1.37607 * 120.26181 * 359.71462 * 9 8 6 11 11 C 1.40680 * 120.13185 * 89.99821 * 5 4 2 12 12 C 1.41394 * 120.23847 * 359.97438 * 11 5 4 13 13 H 1.07998 * 120.00075 * 330.08709 * 12 11 5 14 14 C 1.39949 * 120.00164 * 149.80880 * 12 11 5 15 15 N 1.30816 * 120.00095 * 162.12689 * 14 12 11 16 16 Si 1.86795 * 119.99745 * 342.12622 * 14 12 11 17 17 H 1.48498 * 109.47189 * 95.36088 * 16 14 12 18 18 H 1.48499 * 109.47319 * 215.36213 * 16 14 12 19 19 H 1.48505 * 109.47415 * 335.36121 * 16 14 12 20 20 H 1.08998 * 109.47423 * 269.99809 * 1 2 3 21 21 H 1.09004 * 109.47315 * 30.00458 * 1 2 3 22 22 H 1.09003 * 109.46865 * 150.00017 * 1 2 3 23 23 H 1.08999 * 109.47171 * 60.00263 * 4 2 1 24 24 H 1.08997 * 109.47223 * 299.99980 * 4 2 1 25 25 H 1.08003 * 119.75415 * 179.97438 * 8 6 5 26 26 H 1.07995 * 119.87039 * 179.97438 * 9 8 6 27 27 H 1.08001 * 120.11138 * 180.29533 * 10 9 8 28 28 H 0.97002 * 120.00078 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7422 -1.0296 -0.0002 6 6 4.4217 -0.9045 -1.1919 7 17 3.5683 -1.0634 -2.6952 8 6 5.7858 -0.6515 -1.1946 9 6 6.4796 -0.5224 -0.0014 10 6 5.8197 -0.6384 1.2006 11 6 4.4369 -0.8997 1.2162 12 6 3.7500 -1.0261 2.4456 13 1 2.7096 -0.7446 2.5143 14 6 4.4167 -1.5213 3.5720 15 7 3.9216 -1.3205 4.7660 16 14 6.0136 -2.4692 3.3704 17 1 7.1631 -1.5452 3.5445 18 1 6.0836 -3.5443 4.3923 19 1 6.0639 -3.0716 2.0139 20 1 -0.3634 0.0000 1.0276 21 1 -0.3634 0.8900 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 1.9972 -1.8770 -0.8892 24 1 1.9972 -1.8763 0.8908 25 1 6.3112 -0.5552 -2.1333 26 1 7.5414 -0.3258 -0.0152 27 1 6.3618 -0.5326 2.1287 28 1 4.3835 -1.6640 5.5468 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306593002.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:10 Heat of formation + Delta-G solvation = -39.608659 kcal Electronic energy + Delta-G solvation = -14679.870866 eV Core-core repulsion = 12106.993750 eV Total energy + Delta-G solvation = -2572.877115 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.06764 -37.60964 -35.68194 -33.66068 -32.07658 -30.34091 -29.75676 -26.60917 -24.93684 -21.55122 -20.49874 -18.79037 -17.56111 -15.94774 -15.23379 -15.07360 -14.71417 -14.39871 -13.93671 -13.80637 -12.90322 -12.49053 -12.35049 -11.90601 -11.89352 -11.74978 -11.44156 -11.15730 -10.97563 -10.85937 -10.21785 -10.18130 -9.89662 -9.64550 -9.26422 -8.99609 -7.68323 -7.58551 -7.05874 -4.62526 2.36404 2.46307 2.70837 3.02167 3.04458 3.14600 3.24497 3.89286 4.31510 4.78132 5.27664 5.48462 5.66544 5.70176 5.92413 5.96505 6.03170 6.23376 6.40062 6.48069 6.55642 6.71390 6.92312 7.20883 7.36847 7.48354 7.68722 7.85814 8.18417 8.27023 8.47653 8.65740 9.95426 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.022883 B = 0.011532 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.324711 B = 2427.530238 C = 3311.900332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.354 3.646 3 O -0.448 6.448 4 C -0.114 4.114 5 C -0.162 4.162 6 C 0.026 3.974 7 Cl -0.117 7.117 8 C -0.236 4.236 9 C -0.069 4.069 10 C -0.231 4.231 11 C 0.111 3.889 12 C -0.440 4.440 13 H 0.092 0.908 14 C 0.086 3.914 15 N -0.801 5.801 16 Si 0.909 3.091 17 H -0.269 1.269 18 H -0.289 1.289 19 H -0.243 1.243 20 H 0.091 0.909 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 -2.463 -6.209 7.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.228 3.772 3 O -0.320 6.320 4 C -0.151 4.151 5 C -0.164 4.164 6 C 0.000 4.000 7 Cl -0.089 7.089 8 C -0.256 4.256 9 C -0.087 4.087 10 C -0.251 4.251 11 C 0.108 3.892 12 C -0.468 4.468 13 H 0.110 0.890 14 C -0.134 4.134 15 N -0.424 5.424 16 Si 0.735 3.265 17 H -0.195 1.195 18 H -0.216 1.216 19 H -0.166 1.166 20 H 0.109 0.891 21 H 0.095 0.905 22 H 0.098 0.902 23 H 0.108 0.892 24 H 0.127 0.873 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.038 -1.929 -6.041 6.661 hybrid contribution 0.568 -0.432 0.025 0.714 sum -1.470 -2.361 -6.016 6.628 Atomic orbital electron populations 1.22299 0.95771 1.03762 1.04184 1.24605 0.90966 0.90972 0.70636 1.90382 1.71878 1.34996 1.34774 1.20852 0.93086 0.96976 1.04149 1.19092 0.94067 1.12130 0.91152 1.20485 0.92237 1.03304 0.83974 1.98256 1.78675 1.96518 1.35424 1.20205 0.92220 1.15722 0.97434 1.20527 0.97844 0.98116 0.92247 1.21092 0.95654 1.11710 0.96599 1.17405 0.91143 0.88705 0.91968 1.19404 0.99818 1.36550 0.90994 0.88985 1.26167 0.98812 0.94280 0.94182 1.69681 1.39164 1.34321 0.99249 0.86335 0.80847 0.79370 0.79928 1.19492 1.21628 1.16569 0.89062 0.90523 0.90239 0.89242 0.87349 0.87759 0.87913 0.87698 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.79 10.25 36.00 0.37 -2.42 15 2 C 0.35 6.73 7.22 -29.04 -0.21 6.52 15 3 O -0.45 -10.41 16.77 6.00 0.10 -10.31 15 4 C -0.11 -2.19 4.76 -29.03 -0.14 -2.33 15 5 C -0.16 -3.71 4.44 -103.88 -0.46 -4.17 15 6 C 0.03 0.57 6.31 -39.58 -0.25 0.32 15 7 Cl -0.12 -2.16 27.27 -51.86 -1.41 -3.58 15 8 C -0.24 -5.02 9.83 -39.25 -0.39 -5.41 15 9 C -0.07 -1.49 10.02 -39.67 -0.40 -1.88 15 10 C -0.23 -5.52 7.17 -38.87 -0.28 -5.80 15 11 C 0.11 2.76 5.09 -106.83 -0.54 2.22 15 12 C -0.44 -11.36 8.54 -37.74 -0.32 -11.68 15 13 H 0.09 2.47 7.18 -52.49 -0.38 2.09 15 14 C 0.09 2.15 5.41 -17.34 -0.09 2.06 15 15 N -0.80 -20.50 13.93 55.55 0.77 -19.73 15 16 Si 0.91 19.97 24.53 -169.99 -4.17 15.80 15 17 H -0.27 -5.78 6.72 56.52 0.38 -5.40 15 18 H -0.29 -6.11 7.11 56.52 0.40 -5.71 15 19 H -0.24 -5.45 6.86 56.52 0.39 -5.06 15 20 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 21 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 22 H 0.08 0.88 8.12 -51.93 -0.42 0.45 15 23 H 0.09 1.51 6.89 -51.93 -0.36 1.15 15 24 H 0.11 2.06 6.86 -51.93 -0.36 1.70 15 25 H 0.10 1.98 8.06 -52.48 -0.42 1.55 15 26 H 0.10 1.89 8.06 -52.49 -0.42 1.47 15 27 H 0.11 2.47 4.79 -52.49 -0.25 2.22 15 28 H 0.29 6.65 8.30 -40.82 -0.34 6.31 15 LS Contribution 256.75 15.07 3.87 3.87 Total: -1.00 -28.23 256.75 -6.18 -34.40 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -2.63 Total: 2.10 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -2.71 Total: -22.57 kcal Atomic # 7 Polarization: -20.50 SS G_CDS: 0.77 Total: -19.73 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.10 Total: -10.31 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.17 Total: 15.80 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -1.41 Total: -3.58 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.23 -6.18 -34.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306593002.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.206 kcal (2) G-P(sol) polarization free energy of solvation -28.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds