Wall clock time and date at job start Mon Mar 30 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20764 * 119.99676 * 2 1 4 4 C 1.50700 * 120.00212 * 179.97438 * 2 1 3 5 5 C 1.50703 * 109.47100 * 179.97438 * 4 2 1 6 6 C 1.37754 * 120.13537 * 269.97659 * 5 4 2 7 7 Cl 1.73594 * 119.88803 * 0.04682 * 6 5 4 8 8 C 1.38734 * 120.21941 * 180.02562 * 6 5 4 9 9 C 1.38632 * 120.48932 * 0.02562 * 8 6 5 10 10 C 1.37607 * 120.26181 * 359.71462 * 9 8 6 11 11 C 1.40680 * 120.13185 * 89.99821 * 5 4 2 12 12 C 1.41394 * 120.23847 * 359.97438 * 11 5 4 13 13 H 1.07998 * 120.00075 * 330.08709 * 12 11 5 14 14 C 1.39949 * 120.00164 * 149.80880 * 12 11 5 15 15 N 1.30816 * 120.00095 * 162.12689 * 14 12 11 16 16 Si 1.86795 * 119.99745 * 342.12622 * 14 12 11 17 17 H 1.48498 * 109.47189 * 95.36088 * 16 14 12 18 18 H 1.48499 * 109.47319 * 215.36213 * 16 14 12 19 19 H 1.48505 * 109.47415 * 335.36121 * 16 14 12 20 20 H 1.08998 * 109.47423 * 269.99809 * 1 2 3 21 21 H 1.09004 * 109.47315 * 30.00458 * 1 2 3 22 22 H 1.09003 * 109.46865 * 150.00017 * 1 2 3 23 23 H 1.08999 * 109.47171 * 60.00263 * 4 2 1 24 24 H 1.08997 * 109.47223 * 299.99980 * 4 2 1 25 25 H 1.08003 * 119.75415 * 179.97438 * 8 6 5 26 26 H 1.07995 * 119.87039 * 179.97438 * 9 8 6 27 27 H 1.08001 * 120.11138 * 180.29533 * 10 9 8 28 28 H 0.97002 * 120.00078 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7422 -1.0296 -0.0002 6 6 4.4217 -0.9045 -1.1919 7 17 3.5683 -1.0634 -2.6952 8 6 5.7858 -0.6515 -1.1946 9 6 6.4796 -0.5224 -0.0014 10 6 5.8197 -0.6384 1.2006 11 6 4.4369 -0.8997 1.2162 12 6 3.7500 -1.0261 2.4456 13 1 2.7096 -0.7446 2.5143 14 6 4.4167 -1.5213 3.5720 15 7 3.9216 -1.3205 4.7660 16 14 6.0136 -2.4692 3.3704 17 1 7.1631 -1.5452 3.5445 18 1 6.0836 -3.5443 4.3923 19 1 6.0639 -3.0716 2.0139 20 1 -0.3634 0.0000 1.0276 21 1 -0.3634 0.8900 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 1.9972 -1.8770 -0.8892 24 1 1.9972 -1.8763 0.8908 25 1 6.3112 -0.5552 -2.1333 26 1 7.5414 -0.3258 -0.0152 27 1 6.3618 -0.5326 2.1287 28 1 4.3835 -1.6640 5.5468 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306593002.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:10 Heat of formation + Delta-G solvation = -55.666880 kcal Electronic energy + Delta-G solvation = -14680.567203 eV Core-core repulsion = 12106.993750 eV Total energy + Delta-G solvation = -2573.573452 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.69762 -39.29057 -37.28954 -35.49244 -33.72704 -32.10352 -31.14798 -28.20658 -26.69853 -23.32395 -22.17544 -20.33779 -19.39533 -17.68863 -16.87369 -16.58835 -16.38319 -16.10002 -15.50310 -15.40817 -14.68114 -14.12376 -14.03315 -13.44067 -13.26364 -13.13151 -13.00714 -12.78549 -12.72767 -12.48147 -11.89713 -11.84738 -11.66341 -11.33931 -11.05885 -10.54884 -9.47017 -9.28669 -8.91990 -6.53563 0.61570 0.69304 1.21715 1.27425 1.35977 1.41531 1.48993 2.11485 2.51382 3.24574 3.60089 4.05846 4.29571 4.33352 4.38263 4.60926 4.67504 4.75878 4.82747 4.92207 4.98475 5.14154 5.21805 5.50216 5.63591 5.72955 5.85249 6.08209 6.29246 6.64030 6.77435 6.79093 8.14792 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.022883 B = 0.011532 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.324711 B = 2427.530238 C = 3311.900332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.352 3.648 3 O -0.499 6.499 4 C -0.118 4.118 5 C -0.172 4.172 6 C 0.008 3.992 7 Cl -0.086 7.086 8 C -0.228 4.228 9 C -0.073 4.073 10 C -0.251 4.251 11 C 0.089 3.911 12 C -0.467 4.467 13 H 0.065 0.935 14 C 0.053 3.947 15 N -0.840 5.840 16 Si 0.959 3.041 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.251 1.251 20 H 0.102 0.898 21 H 0.087 0.913 22 H 0.113 0.887 23 H 0.115 0.885 24 H 0.106 0.894 25 H 0.133 0.867 26 H 0.138 0.862 27 H 0.103 0.897 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.879 -3.106 -8.066 8.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.230 3.770 3 O -0.376 6.376 4 C -0.155 4.155 5 C -0.174 4.174 6 C -0.018 4.018 7 Cl -0.058 7.058 8 C -0.247 4.247 9 C -0.091 4.091 10 C -0.271 4.271 11 C 0.086 3.914 12 C -0.496 4.496 13 H 0.083 0.917 14 C -0.163 4.163 15 N -0.466 5.466 16 Si 0.783 3.217 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.175 1.175 20 H 0.120 0.880 21 H 0.106 0.894 22 H 0.131 0.869 23 H 0.133 0.867 24 H 0.124 0.876 25 H 0.150 0.850 26 H 0.155 0.845 27 H 0.120 0.880 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.707 -2.586 -7.905 8.490 hybrid contribution 0.430 -0.206 0.377 0.608 sum -1.277 -2.791 -7.528 8.129 Atomic orbital electron populations 1.22279 0.91268 1.06018 1.05484 1.25220 0.93465 0.89778 0.68526 1.90366 1.73395 1.36350 1.37453 1.20981 0.91485 0.97815 1.05187 1.19502 0.95875 1.10944 0.91081 1.20710 0.92933 1.03024 0.85146 1.98257 1.78118 1.96332 1.33056 1.20674 0.92232 1.13274 0.98564 1.20921 0.99663 0.97079 0.91440 1.21266 0.95565 1.12571 0.97660 1.17633 0.92039 0.89365 0.92380 1.19340 0.98969 1.38897 0.92363 0.91678 1.26760 1.01227 0.94609 0.93732 1.69704 1.40849 1.36083 0.99918 0.85569 0.78056 0.78599 0.79500 1.18673 1.20260 1.17473 0.87995 0.89432 0.86860 0.86665 0.87574 0.84954 0.84457 0.87968 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.88 10.25 71.23 0.73 -4.15 15 2 C 0.35 13.16 7.22 29.10 0.21 13.37 15 3 O -0.50 -23.39 16.77 -1.46 -0.02 -23.42 15 4 C -0.12 -4.46 4.76 29.10 0.14 -4.32 15 5 C -0.17 -7.77 4.44 -19.38 -0.09 -7.86 15 6 C 0.01 0.34 6.31 22.27 0.14 0.48 15 7 Cl -0.09 -2.95 27.27 -2.72 -0.07 -3.02 15 8 C -0.23 -9.06 9.83 22.48 0.22 -8.84 15 9 C -0.07 -2.98 10.02 22.21 0.22 -2.76 15 10 C -0.25 -11.86 7.17 22.73 0.16 -11.70 15 11 C 0.09 4.46 5.09 -21.30 -0.11 4.35 15 12 C -0.47 -24.99 8.54 23.46 0.20 -24.79 15 13 H 0.07 3.70 7.18 -2.91 -0.02 3.68 15 14 C 0.05 2.71 5.41 85.26 0.46 3.17 15 15 N -0.84 -44.32 13.93 21.83 0.30 -44.01 15 16 Si 0.96 41.28 24.53 68.60 1.68 42.96 15 17 H -0.26 -10.78 6.72 99.48 0.67 -10.12 15 18 H -0.28 -11.13 7.11 99.48 0.71 -10.42 15 19 H -0.25 -11.01 6.86 99.48 0.68 -10.33 15 20 H 0.10 2.42 8.14 -2.39 -0.02 2.40 15 21 H 0.09 2.05 8.14 -2.38 -0.02 2.03 15 22 H 0.11 2.08 8.12 -2.39 -0.02 2.06 15 23 H 0.12 3.66 6.89 -2.39 -0.02 3.64 15 24 H 0.11 4.07 6.86 -2.39 -0.02 4.06 15 25 H 0.13 4.47 8.06 -2.91 -0.02 4.45 15 26 H 0.14 4.57 8.06 -2.91 -0.02 4.55 15 27 H 0.10 4.78 4.79 -2.91 -0.01 4.76 15 28 H 0.29 13.99 8.30 -92.71 -0.77 13.22 15 Total: -1.00 -61.84 256.75 5.30 -56.55 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.12 Total: 13.98 kcal Atomic # 6 Polarization: -45.32 SS G_CDS: 2.29 Total: -43.03 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.30 Total: -44.01 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.02 Total: -23.42 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.68 Total: 42.96 kcal Atomic # 17 Polarization: -2.95 SS G_CDS: -0.07 Total: -3.02 kcal Total: -61.84 5.30 -56.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306593002.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.879 kcal (2) G-P(sol) polarization free energy of solvation -61.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds