Wall clock time and date at job start Mon Mar 30 2020 05:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30921 * 1 3 3 Si 1.86804 * 119.99509 * 2 1 4 4 H 1.48507 * 109.47145 * 84.85214 * 3 2 1 5 5 H 1.48500 * 109.47115 * 204.84954 * 3 2 1 6 6 H 1.48493 * 109.47448 * 324.85267 * 3 2 1 7 7 C 1.39872 * 120.00543 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99506 * 19.51470 * 7 2 1 9 9 C 1.40845 * 120.00282 * 199.50710 * 7 2 1 10 10 C 1.40384 * 120.23381 * 26.14609 * 9 7 2 11 11 C 1.38754 * 120.05396 * 179.69599 * 10 9 7 12 12 S 1.76069 * 130.37610 * 180.22586 * 11 10 9 13 13 C 1.75461 * 91.57987 * 180.34395 * 12 11 10 14 14 C 1.32590 * 110.87401 * 0.02562 * 13 12 11 15 15 F 1.35097 * 122.08193 * 180.02562 * 14 13 12 16 16 C 1.40446 * 120.24871 * 0.60177 * 11 10 9 17 17 C 1.41836 * 119.09256 * 359.69676 * 16 11 10 18 18 C 1.35755 * 120.82269 * 359.97438 * 17 16 11 19 19 O 1.35844 * 119.87981 * 180.02562 * 18 17 16 20 20 H 0.97001 * 120.00320 * 359.97438 * 1 2 3 21 21 H 1.08003 * 119.96682 * 359.97438 * 10 9 7 22 22 H 1.08006 * 124.56584 * 179.97438 * 13 12 11 23 23 H 1.08006 * 119.59465 * 180.02562 * 17 16 11 24 24 H 0.96700 * 114.00031 * 269.26612 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.3818 2.1094 1.3945 5 1 3.5908 1.4114 -0.5884 6 1 1.4992 2.6189 -0.8059 7 6 2.0087 -1.2113 0.0005 8 1 1.5152 -2.1199 -0.3115 9 6 3.3565 -1.2460 0.4078 10 6 3.8513 -0.2793 1.2974 11 6 5.1781 -0.3208 1.7012 12 16 6.0715 0.7324 2.7933 13 6 7.5436 -0.1935 2.5599 14 6 7.3399 -1.2018 1.7234 15 9 8.3244 -2.0623 1.3836 16 6 6.0352 -1.3207 1.2132 17 6 5.5234 -2.2873 0.3101 18 6 4.2241 -2.2538 -0.0819 19 8 3.7540 -3.1895 -0.9473 20 1 -0.4851 0.8400 0.0004 21 1 3.1974 0.4947 1.6713 22 1 8.4887 0.0286 3.0333 23 1 6.1753 -3.0601 -0.0698 24 1 3.8263 -2.9362 -1.8777 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306593234.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:28 Heat of formation + Delta-G solvation = -56.918558 kcal Electronic energy + Delta-G solvation = -14192.869360 eV Core-core repulsion = 11497.825032 eV Total energy + Delta-G solvation = -2695.044328 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.33129 -38.88659 -36.33884 -34.64719 -32.85635 -30.08002 -28.74940 -25.43481 -22.26393 -22.15760 -20.02830 -17.92728 -17.70731 -16.73631 -15.88193 -15.41063 -15.15299 -14.81625 -14.47913 -13.67551 -13.59736 -13.02147 -12.80966 -12.35764 -11.82002 -11.61417 -11.48605 -11.10901 -10.80515 -10.41099 -10.08936 -9.93351 -9.66930 -9.22543 -8.68849 -7.74022 -7.42005 -6.96927 -4.83965 1.43845 2.19114 2.25728 2.64347 2.75018 2.94404 3.01015 3.12968 3.68540 4.05347 4.83750 5.05422 5.26339 5.54841 5.67588 6.10028 6.22901 6.42808 6.56519 6.67193 6.80088 7.06525 7.27939 7.31125 7.52903 7.86844 8.04219 8.30632 8.66122 9.55621 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.010628 C = 0.008089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.495300 B = 2633.805738 C = 3460.854841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.078 3.922 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.238 1.238 6 H -0.285 1.285 7 C -0.388 4.388 8 H 0.108 0.892 9 C 0.087 3.913 10 C -0.234 4.234 11 C -0.041 4.041 12 S 0.051 5.949 13 C -0.318 4.318 14 C 0.151 3.849 15 F -0.142 7.142 16 C -0.240 4.240 17 C -0.058 4.058 18 C 0.031 3.969 19 O -0.492 6.492 20 H 0.295 0.705 21 H 0.112 0.888 22 H 0.159 0.841 23 H 0.111 0.889 24 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.168 2.325 0.176 6.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.161 1.161 6 H -0.212 1.212 7 C -0.414 4.414 8 H 0.126 0.874 9 C 0.080 3.920 10 C -0.261 4.261 11 C -0.156 4.156 12 S 0.311 5.689 13 C -0.452 4.452 14 C 0.120 3.880 15 F -0.121 7.121 16 C -0.245 4.245 17 C -0.079 4.079 18 C -0.015 4.015 19 O -0.300 6.300 20 H 0.106 0.894 21 H 0.129 0.871 22 H 0.176 0.824 23 H 0.129 0.871 24 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.537 3.287 1.535 6.620 hybrid contribution 0.879 -0.389 -1.191 1.530 sum 6.416 2.899 0.345 7.049 Atomic orbital electron populations 1.69713 1.08346 1.31576 1.29271 1.26466 0.94963 1.02607 0.90659 0.86208 0.81430 0.78702 0.79616 1.18876 1.16114 1.21199 1.19691 0.92974 0.96721 1.32049 0.87438 1.17835 0.93142 0.90304 0.90727 1.20009 0.92867 1.06035 1.07216 1.21913 0.97249 0.97070 0.99346 1.83676 1.00581 1.33620 1.51060 1.24278 1.03594 1.04820 1.12532 1.16292 0.84729 0.89530 0.97449 1.91404 1.60594 1.68840 1.91253 1.17235 0.92074 1.03682 1.11534 1.20405 0.94445 0.96307 0.96720 1.17785 0.90692 0.94544 0.98435 1.84804 1.85051 1.41662 1.18461 0.89364 0.87064 0.82374 0.87111 0.77668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.29 13.93 55.54 0.77 -17.52 14 2 C 0.08 1.83 5.40 -17.33 -0.09 1.74 14 3 Si 0.92 19.03 24.45 -169.99 -4.16 14.88 14 4 H -0.26 -5.39 6.65 56.52 0.38 -5.02 14 5 H -0.24 -5.12 6.83 56.52 0.39 -4.74 14 6 H -0.28 -5.63 7.11 56.52 0.40 -5.22 14 7 C -0.39 -9.53 9.21 -37.99 -0.35 -9.88 14 8 H 0.11 2.78 7.82 -52.48 -0.41 2.37 14 9 C 0.09 2.08 5.20 -106.78 -0.55 1.53 14 10 C -0.23 -5.50 7.20 -38.58 -0.28 -5.77 14 11 C -0.04 -0.91 6.46 -38.56 -0.25 -1.16 14 12 S 0.05 0.98 23.29 -107.50 -2.50 -1.53 14 13 C -0.32 -5.86 11.08 28.83 0.32 -5.54 14 14 C 0.15 3.06 7.33 -40.60 -0.30 2.77 14 15 F -0.14 -2.75 17.28 2.25 0.04 -2.71 14 16 C -0.24 -5.30 5.89 -106.80 -0.63 -5.93 14 17 C -0.06 -1.25 9.89 -39.10 -0.39 -1.64 14 18 C 0.03 0.69 6.65 -39.14 -0.26 0.43 14 19 O -0.49 -9.95 12.77 -19.25 -0.25 -10.20 14 20 H 0.30 6.27 8.30 -40.82 -0.34 5.93 14 21 H 0.11 2.57 4.29 -52.48 -0.23 2.34 14 22 H 0.16 2.44 8.06 -52.48 -0.42 2.02 14 23 H 0.11 2.16 8.06 -52.48 -0.42 1.74 14 24 H 0.37 5.74 9.06 45.56 0.41 6.15 14 LS Contribution 232.19 15.07 3.50 3.50 Total: -1.00 -25.86 232.19 -5.62 -31.47 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -0.24 Total: 5.57 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -2.78 Total: -23.47 kcal Atomic # 7 Polarization: -18.29 SS G_CDS: 0.77 Total: -17.52 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.25 Total: -10.20 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.16 Total: 14.88 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.50 Total: -1.53 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -25.86 -5.62 -31.47 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306593234.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.447 kcal (2) G-P(sol) polarization free energy of solvation -25.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds