Wall clock time and date at job start Mon Mar 30 2020 05:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30921 * 1 3 3 Si 1.86804 * 119.99509 * 2 1 4 4 H 1.48507 * 109.47145 * 84.85214 * 3 2 1 5 5 H 1.48500 * 109.47115 * 204.84954 * 3 2 1 6 6 H 1.48493 * 109.47448 * 324.85267 * 3 2 1 7 7 C 1.39872 * 120.00543 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99506 * 19.51470 * 7 2 1 9 9 C 1.40845 * 120.00282 * 199.50710 * 7 2 1 10 10 C 1.40384 * 120.23381 * 26.14609 * 9 7 2 11 11 C 1.38754 * 120.05396 * 179.69599 * 10 9 7 12 12 S 1.76069 * 130.37610 * 180.22586 * 11 10 9 13 13 C 1.75461 * 91.57987 * 180.34395 * 12 11 10 14 14 C 1.32590 * 110.87401 * 0.02562 * 13 12 11 15 15 F 1.35097 * 122.08193 * 180.02562 * 14 13 12 16 16 C 1.40446 * 120.24871 * 0.60177 * 11 10 9 17 17 C 1.41836 * 119.09256 * 359.69676 * 16 11 10 18 18 C 1.35755 * 120.82269 * 359.97438 * 17 16 11 19 19 O 1.35844 * 119.87981 * 180.02562 * 18 17 16 20 20 H 0.97001 * 120.00320 * 359.97438 * 1 2 3 21 21 H 1.08003 * 119.96682 * 359.97438 * 10 9 7 22 22 H 1.08006 * 124.56584 * 179.97438 * 13 12 11 23 23 H 1.08006 * 119.59465 * 180.02562 * 17 16 11 24 24 H 0.96700 * 114.00031 * 269.26612 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.3818 2.1094 1.3945 5 1 3.5908 1.4114 -0.5884 6 1 1.4992 2.6189 -0.8059 7 6 2.0087 -1.2113 0.0005 8 1 1.5152 -2.1199 -0.3115 9 6 3.3565 -1.2460 0.4078 10 6 3.8513 -0.2793 1.2974 11 6 5.1781 -0.3208 1.7012 12 16 6.0715 0.7324 2.7933 13 6 7.5436 -0.1935 2.5599 14 6 7.3399 -1.2018 1.7234 15 9 8.3244 -2.0623 1.3836 16 6 6.0352 -1.3207 1.2132 17 6 5.5234 -2.2873 0.3101 18 6 4.2241 -2.2538 -0.0819 19 8 3.7540 -3.1895 -0.9473 20 1 -0.4851 0.8400 0.0004 21 1 3.1974 0.4947 1.6713 22 1 8.4887 0.0286 3.0333 23 1 6.1753 -3.0601 -0.0698 24 1 3.8263 -2.9362 -1.8777 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306593234.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:28 Heat of formation + Delta-G solvation = -73.270374 kcal Electronic energy + Delta-G solvation = -14193.578428 eV Core-core repulsion = 11497.825032 eV Total energy + Delta-G solvation = -2695.753396 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.84087 -40.58407 -37.98110 -36.35954 -34.54315 -31.77875 -30.45274 -27.14498 -23.93151 -23.87469 -21.66187 -19.68218 -19.35135 -18.35184 -17.47639 -17.07992 -16.71017 -16.46650 -16.14163 -15.36050 -15.21414 -14.70302 -14.45934 -14.02162 -13.45374 -13.23373 -13.10138 -12.79373 -12.52587 -12.01420 -11.75359 -11.61869 -11.33222 -10.90447 -10.35650 -9.44807 -9.15419 -8.55540 -6.64510 -0.19732 0.45840 0.65335 1.04576 1.08885 1.25617 1.37728 1.46571 2.02114 2.32923 3.11036 3.43391 3.65079 3.91002 4.16831 4.45992 4.53980 4.76481 4.93039 4.97190 5.11752 5.34558 5.55646 5.63240 5.82968 6.04428 6.32356 6.51434 7.11278 7.89033 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.010628 C = 0.008089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.495300 B = 2633.805738 C = 3460.854841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.054 3.946 3 Si 0.959 3.041 4 H -0.257 1.257 5 H -0.250 1.250 6 H -0.267 1.267 7 C -0.424 4.424 8 H 0.078 0.922 9 C 0.075 3.925 10 C -0.246 4.246 11 C -0.073 4.073 12 S 0.100 5.900 13 C -0.286 4.286 14 C 0.124 3.876 15 F -0.137 7.137 16 C -0.238 4.238 17 C -0.065 4.065 18 C 0.026 3.974 19 O -0.499 6.499 20 H 0.305 0.695 21 H 0.110 0.890 22 H 0.197 0.803 23 H 0.130 0.870 24 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.628 3.458 1.110 9.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.167 4.167 3 Si 0.782 3.218 4 H -0.183 1.183 5 H -0.174 1.174 6 H -0.193 1.193 7 C -0.452 4.452 8 H 0.096 0.904 9 C 0.068 3.932 10 C -0.273 4.273 11 C -0.189 4.189 12 S 0.361 5.639 13 C -0.420 4.420 14 C 0.093 3.907 15 F -0.116 7.116 16 C -0.244 4.244 17 C -0.086 4.086 18 C -0.020 4.020 19 O -0.310 6.310 20 H 0.116 0.884 21 H 0.128 0.872 22 H 0.214 0.786 23 H 0.148 0.852 24 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 7.980 4.426 2.458 9.450 hybrid contribution 0.400 -0.790 -1.376 1.636 sum 8.380 3.636 1.082 9.199 Atomic orbital electron populations 1.69713 1.09144 1.32745 1.31161 1.26945 0.95389 1.04319 0.90068 0.85548 0.79945 0.76416 0.79899 1.18288 1.17402 1.19339 1.19514 0.93848 0.96419 1.35380 0.90391 1.18020 0.93114 0.91153 0.90923 1.20046 0.93633 1.06149 1.07451 1.22229 0.97349 0.98531 1.00741 1.83585 0.99570 1.31944 1.48830 1.24855 1.04777 1.02595 1.09775 1.16251 0.84367 0.91007 0.99099 1.91418 1.60047 1.68783 1.91359 1.17637 0.93086 1.03103 1.10578 1.20616 0.94342 0.96883 0.96764 1.17918 0.90939 0.94292 0.98802 1.84727 1.85073 1.41333 1.19840 0.88358 0.87204 0.78573 0.85186 0.75269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.53 13.93 21.82 0.30 -39.22 14 2 C 0.05 2.61 5.40 85.22 0.46 3.07 14 3 Si 0.96 39.07 24.45 68.60 1.68 40.75 14 4 H -0.26 -10.12 6.65 99.48 0.66 -9.46 14 5 H -0.25 -10.58 6.83 99.48 0.68 -9.90 14 6 H -0.27 -9.99 7.11 99.48 0.71 -9.28 14 7 C -0.42 -21.77 9.21 23.30 0.21 -21.56 14 8 H 0.08 4.31 7.82 -2.91 -0.02 4.29 14 9 C 0.07 3.63 5.20 -21.26 -0.11 3.52 14 10 C -0.25 -11.46 7.20 22.92 0.17 -11.30 14 11 C -0.07 -3.15 6.46 22.93 0.15 -3.00 14 12 S 0.10 3.44 23.29 -56.49 -1.32 2.13 14 13 C -0.29 -9.13 11.08 66.66 0.74 -8.39 14 14 C 0.12 4.58 7.33 21.69 0.16 4.74 14 15 F -0.14 -4.84 17.28 44.97 0.78 -4.07 14 16 C -0.24 -10.01 5.89 -21.28 -0.13 -10.14 14 17 C -0.07 -2.74 9.89 22.58 0.22 -2.52 14 18 C 0.03 1.17 6.65 22.55 0.15 1.32 14 19 O -0.50 -20.35 12.77 -91.79 -1.17 -21.52 14 20 H 0.31 13.22 8.30 -92.71 -0.77 12.45 14 21 H 0.11 5.04 4.29 -2.91 -0.01 5.02 14 22 H 0.20 4.79 8.06 -2.91 -0.02 4.76 14 23 H 0.13 4.84 8.06 -2.91 -0.02 4.81 14 24 H 0.39 12.15 9.06 -74.06 -0.67 11.48 14 Total: -1.00 -54.84 232.19 2.82 -52.02 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.53 Total: 14.18 kcal Atomic # 6 Polarization: -46.28 SS G_CDS: 2.02 Total: -44.26 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.30 Total: -39.22 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -1.17 Total: -21.52 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.78 Total: -4.07 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.68 Total: 40.75 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.32 Total: 2.13 kcal Total: -54.84 2.82 -52.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306593234.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.254 kcal (2) G-P(sol) polarization free energy of solvation -54.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds