Wall clock time and date at job start Mon Mar 30 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20759 * 120.00046 * 2 1 4 4 C 1.50708 * 120.00133 * 180.02562 * 2 1 3 5 5 C 1.50695 * 109.47273 * 179.97438 * 4 2 1 6 6 C 1.37599 * 120.12415 * 265.28263 * 5 4 2 7 7 C 1.38658 * 120.28869 * 180.27885 * 6 5 4 8 8 C 1.38572 * 120.52263 * 359.71494 * 7 6 5 9 9 C 1.37785 * 120.23311 * 359.97438 * 8 7 6 10 10 Cl 1.73599 * 120.14513 * 179.97438 * 9 8 7 11 11 C 1.40707 * 120.11726 * 84.99565 * 5 4 2 12 12 C 1.41328 * 120.25800 * 0.02562 * 11 5 4 13 13 H 1.08001 * 119.99890 * 315.16937 * 12 11 5 14 14 C 1.39942 * 120.00120 * 135.17261 * 12 11 5 15 15 N 1.30832 * 120.00283 * 339.21748 * 14 12 11 16 16 Si 1.86805 * 120.00164 * 159.22292 * 14 12 11 17 17 H 1.48496 * 109.47244 * 59.99740 * 16 14 12 18 18 H 1.48501 * 109.47246 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46818 * 299.99649 * 16 14 12 20 20 H 1.09002 * 109.47219 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46810 * 299.99683 * 1 2 3 22 22 H 1.08994 * 109.47205 * 59.99767 * 1 2 3 23 23 H 1.09003 * 109.46938 * 59.99337 * 4 2 1 24 24 H 1.09002 * 109.46383 * 299.99924 * 4 2 1 25 25 H 1.08002 * 119.85732 * 359.97177 * 6 5 4 26 26 H 1.08001 * 119.74006 * 179.73141 * 7 6 5 27 27 H 1.07995 * 119.88747 * 180.02562 * 8 7 6 28 28 H 0.96993 * 120.00557 * 184.73566 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3052 -0.0006 5 6 3.7422 -1.0298 -0.0011 6 6 4.4385 -0.9996 -1.1875 7 6 5.8029 -0.7522 -1.1914 8 6 6.4807 -0.5269 -0.0040 9 6 5.8036 -0.5459 1.1958 10 17 6.6551 -0.2639 2.6820 11 6 4.4174 -0.7967 1.2112 12 6 3.7115 -0.8198 2.4353 13 1 2.7597 -0.3163 2.5194 14 6 4.2459 -1.4949 3.5385 15 7 5.1521 -2.4219 3.3622 16 14 3.6651 -1.0727 5.2631 17 1 2.2039 -1.3161 5.3668 18 1 4.3803 -1.9230 6.2483 19 1 3.9501 0.3572 5.5451 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.9971 -1.8764 -0.8908 24 1 1.9972 -1.8770 0.8892 25 1 3.9211 -1.1742 -2.1193 26 1 6.3415 -0.7348 -2.1274 27 1 7.5434 -0.3348 -0.0191 28 1 5.4724 -2.9373 4.1188 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306601379.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:01 Heat of formation + Delta-G solvation = -35.125389 kcal Electronic energy + Delta-G solvation = -14719.544878 eV Core-core repulsion = 12146.862171 eV Total energy + Delta-G solvation = -2572.682706 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.96719 -37.36692 -34.76166 -33.51557 -31.81152 -29.88187 -29.45388 -26.45422 -24.88119 -21.07234 -20.44434 -18.75234 -17.25379 -15.51320 -15.11664 -14.96466 -14.70463 -14.19468 -13.78266 -13.62592 -12.68752 -12.19687 -12.02716 -11.89550 -11.82959 -11.44510 -11.18621 -11.11068 -10.80860 -10.56753 -10.18417 -9.92335 -9.74861 -9.42554 -8.95130 -8.56693 -7.37890 -7.04395 -6.67521 -4.40445 2.65912 2.69314 2.79295 3.12775 3.13665 3.22053 3.93043 4.03295 4.60783 4.81823 5.38833 5.49577 5.63455 5.78899 5.97211 5.99585 6.17147 6.36245 6.41226 6.51059 6.69656 7.02589 7.25514 7.34550 7.60671 7.69407 7.92980 8.08722 8.24133 8.43690 8.78231 8.91810 10.30610 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.013194 C = 0.008867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.445182 B = 2121.713610 C = 3156.929970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.351 3.649 3 O -0.450 6.450 4 C -0.105 4.105 5 C -0.157 4.157 6 C -0.088 4.088 7 C -0.220 4.220 8 C -0.094 4.094 9 C -0.073 4.073 10 Cl -0.099 7.099 11 C 0.142 3.858 12 C -0.481 4.481 13 H 0.078 0.922 14 C 0.095 3.905 15 N -0.779 5.779 16 Si 0.892 3.108 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.263 1.263 20 H 0.077 0.923 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.107 0.893 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.973 -0.270 -3.101 5.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.226 3.774 3 O -0.323 6.323 4 C -0.142 4.142 5 C -0.158 4.158 6 C -0.106 4.106 7 C -0.240 4.240 8 C -0.113 4.113 9 C -0.100 4.100 10 Cl -0.071 7.071 11 C 0.139 3.861 12 C -0.510 4.510 13 H 0.096 0.904 14 C -0.125 4.125 15 N -0.402 5.402 16 Si 0.717 3.283 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.188 1.188 20 H 0.096 0.904 21 H 0.103 0.897 22 H 0.100 0.900 23 H 0.101 0.899 24 H 0.125 0.875 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.380 0.168 -2.833 5.219 hybrid contribution -0.124 -0.013 0.998 1.005 sum -4.505 0.154 -1.835 4.866 Atomic orbital electron populations 1.22284 0.96011 1.03922 1.03829 1.24736 0.90845 0.91250 0.70571 1.90386 1.71847 1.35158 1.34894 1.20783 0.93642 0.96224 1.03514 1.19359 0.93536 1.09758 0.93161 1.20474 0.94139 1.00051 0.95942 1.20266 0.94432 1.13360 0.95920 1.20520 0.97977 1.01094 0.91749 1.20959 0.93483 1.11131 0.84453 1.98202 1.77074 1.94525 1.37278 1.17079 0.89333 0.87246 0.92484 1.19118 1.06179 1.31864 0.93885 0.90393 1.25577 0.93043 0.93620 1.00238 1.69775 1.22529 1.14279 1.33667 0.86600 0.79448 0.80091 0.82151 1.19274 1.20447 1.18754 0.90431 0.89691 0.90007 0.89948 0.87492 0.88950 0.88459 0.88335 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.59 10.33 36.01 0.37 -2.22 15 2 C 0.35 6.38 6.98 -29.03 -0.20 6.18 15 3 O -0.45 -10.17 16.77 6.00 0.10 -10.07 15 4 C -0.10 -1.96 5.14 -29.03 -0.15 -2.11 15 5 C -0.16 -3.64 4.43 -103.93 -0.46 -4.10 15 6 C -0.09 -1.92 9.66 -39.66 -0.38 -2.30 15 7 C -0.22 -4.84 10.05 -39.30 -0.39 -5.23 15 8 C -0.09 -2.21 9.81 -39.62 -0.39 -2.60 15 9 C -0.07 -1.87 5.94 -38.75 -0.23 -2.10 15 10 Cl -0.10 -2.45 24.94 -51.86 -1.29 -3.74 15 11 C 0.14 3.68 5.26 -106.79 -0.56 3.12 15 12 C -0.48 -12.47 7.33 -37.77 -0.28 -12.75 15 13 H 0.08 2.00 7.52 -52.49 -0.39 1.60 15 14 C 0.10 2.39 3.75 -17.34 -0.07 2.32 15 15 N -0.78 -20.07 11.17 55.55 0.62 -19.45 15 16 Si 0.89 19.33 29.61 -169.99 -5.03 14.29 15 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 15 18 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 19 H -0.26 -5.83 7.11 56.52 0.40 -5.43 15 20 H 0.08 0.80 8.00 -51.93 -0.42 0.38 15 21 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 22 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.08 1.27 8.05 -51.93 -0.42 0.85 15 24 H 0.11 2.03 7.31 -51.93 -0.38 1.65 15 25 H 0.09 1.73 8.06 -52.49 -0.42 1.31 15 26 H 0.10 1.85 8.06 -52.49 -0.42 1.42 15 27 H 0.10 2.10 8.06 -52.49 -0.42 1.67 15 28 H 0.28 6.76 8.30 -40.82 -0.34 6.42 15 LS Contribution 262.15 15.07 3.95 3.95 Total: -1.00 -29.24 262.15 -7.25 -36.49 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -2.86 Total: 0.31 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -2.74 Total: -21.79 kcal Atomic # 7 Polarization: -20.07 SS G_CDS: 0.62 Total: -19.45 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.10 Total: -10.07 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.29 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -1.29 Total: -3.74 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.24 -7.25 -36.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306601379.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.368 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds