Wall clock time and date at job start Mon Mar 30 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20759 * 120.00046 * 2 1 4 4 C 1.50708 * 120.00133 * 180.02562 * 2 1 3 5 5 C 1.50695 * 109.47273 * 179.97438 * 4 2 1 6 6 C 1.37599 * 120.12415 * 265.28263 * 5 4 2 7 7 C 1.38658 * 120.28869 * 180.27885 * 6 5 4 8 8 C 1.38572 * 120.52263 * 359.71494 * 7 6 5 9 9 C 1.37785 * 120.23311 * 359.97438 * 8 7 6 10 10 Cl 1.73599 * 120.14513 * 179.97438 * 9 8 7 11 11 C 1.40707 * 120.11726 * 84.99565 * 5 4 2 12 12 C 1.41328 * 120.25800 * 0.02562 * 11 5 4 13 13 H 1.08001 * 119.99890 * 315.16937 * 12 11 5 14 14 C 1.39942 * 120.00120 * 135.17261 * 12 11 5 15 15 N 1.30832 * 120.00283 * 339.21748 * 14 12 11 16 16 Si 1.86805 * 120.00164 * 159.22292 * 14 12 11 17 17 H 1.48496 * 109.47244 * 59.99740 * 16 14 12 18 18 H 1.48501 * 109.47246 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46818 * 299.99649 * 16 14 12 20 20 H 1.09002 * 109.47219 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46810 * 299.99683 * 1 2 3 22 22 H 1.08994 * 109.47205 * 59.99767 * 1 2 3 23 23 H 1.09003 * 109.46938 * 59.99337 * 4 2 1 24 24 H 1.09002 * 109.46383 * 299.99924 * 4 2 1 25 25 H 1.08002 * 119.85732 * 359.97177 * 6 5 4 26 26 H 1.08001 * 119.74006 * 179.73141 * 7 6 5 27 27 H 1.07995 * 119.88747 * 180.02562 * 8 7 6 28 28 H 0.96993 * 120.00557 * 184.73566 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3052 -0.0006 5 6 3.7422 -1.0298 -0.0011 6 6 4.4385 -0.9996 -1.1875 7 6 5.8029 -0.7522 -1.1914 8 6 6.4807 -0.5269 -0.0040 9 6 5.8036 -0.5459 1.1958 10 17 6.6551 -0.2639 2.6820 11 6 4.4174 -0.7967 1.2112 12 6 3.7115 -0.8198 2.4353 13 1 2.7597 -0.3163 2.5194 14 6 4.2459 -1.4949 3.5385 15 7 5.1521 -2.4219 3.3622 16 14 3.6651 -1.0727 5.2631 17 1 2.2039 -1.3161 5.3668 18 1 4.3803 -1.9230 6.2483 19 1 3.9501 0.3572 5.5451 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.9971 -1.8764 -0.8908 24 1 1.9972 -1.8770 0.8892 25 1 3.9211 -1.1742 -2.1193 26 1 6.3415 -0.7348 -2.1274 27 1 7.5434 -0.3348 -0.0191 28 1 5.4724 -2.9373 4.1188 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306601379.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:00 Heat of formation + Delta-G solvation = -50.938978 kcal Electronic energy + Delta-G solvation = -14720.230606 eV Core-core repulsion = 12146.862171 eV Total energy + Delta-G solvation = -2573.368435 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.52981 -39.07348 -36.63261 -35.36700 -33.43731 -31.46961 -30.99676 -28.03171 -26.66332 -22.88237 -22.11642 -20.23434 -19.10444 -17.28200 -16.73707 -16.42456 -16.31385 -15.83378 -15.38665 -15.24085 -14.45415 -13.87566 -13.68768 -13.23098 -13.08051 -13.03533 -12.92535 -12.68179 -12.58204 -12.23301 -11.96646 -11.71452 -11.52591 -11.21558 -10.46487 -10.41880 -9.14836 -8.90266 -8.52702 -6.31767 0.87786 0.99001 1.28824 1.36906 1.43547 1.47704 2.05745 2.24803 2.81771 3.35843 3.72767 4.20555 4.33658 4.47344 4.58444 4.72414 4.78017 4.83313 4.93936 5.08755 5.21185 5.28215 5.40285 5.62284 5.82323 5.90567 6.09886 6.31325 6.54547 6.87953 6.94181 7.03214 8.46782 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.013194 C = 0.008867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.445182 B = 2121.713610 C = 3156.929970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.353 3.647 3 O -0.505 6.505 4 C -0.109 4.109 5 C -0.166 4.166 6 C -0.098 4.098 7 C -0.215 4.215 8 C -0.111 4.111 9 C -0.105 4.105 10 Cl -0.105 7.105 11 C 0.107 3.893 12 C -0.503 4.503 13 H 0.069 0.931 14 C 0.067 3.933 15 N -0.808 5.808 16 Si 0.940 3.060 17 H -0.253 1.253 18 H -0.271 1.271 19 H -0.274 1.274 20 H 0.107 0.893 21 H 0.090 0.910 22 H 0.103 0.897 23 H 0.121 0.879 24 H 0.103 0.897 25 H 0.128 0.872 26 H 0.131 0.869 27 H 0.113 0.887 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.436 -0.733 -4.201 7.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.232 3.768 3 O -0.382 6.382 4 C -0.146 4.146 5 C -0.168 4.168 6 C -0.116 4.116 7 C -0.234 4.234 8 C -0.130 4.130 9 C -0.132 4.132 10 Cl -0.076 7.076 11 C 0.104 3.896 12 C -0.533 4.533 13 H 0.087 0.913 14 C -0.150 4.150 15 N -0.434 5.434 16 Si 0.763 3.237 17 H -0.176 1.176 18 H -0.196 1.196 19 H -0.199 1.199 20 H 0.126 0.874 21 H 0.108 0.892 22 H 0.121 0.879 23 H 0.139 0.861 24 H 0.121 0.879 25 H 0.146 0.854 26 H 0.149 0.851 27 H 0.131 0.869 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.863 -0.317 -3.941 7.072 hybrid contribution 0.355 0.124 1.177 1.236 sum -5.508 -0.193 -2.764 6.166 Atomic orbital electron populations 1.22245 0.91274 1.06384 1.04986 1.25298 0.93361 0.89848 0.68330 1.90380 1.73435 1.36615 1.37723 1.20934 0.91215 0.97345 1.05096 1.19949 0.95995 1.08022 0.92786 1.20938 0.94398 0.99307 0.97001 1.20761 0.94915 1.11070 0.96650 1.20826 0.98988 1.01440 0.91746 1.21333 0.94095 1.12665 0.85124 1.98176 1.77049 1.94622 1.37744 1.17497 0.89942 0.88324 0.93790 1.19152 1.06329 1.32899 0.94872 0.91259 1.26084 0.93078 0.93098 1.02755 1.69818 1.23871 1.15210 1.34453 0.85860 0.80012 0.79080 0.78760 1.17648 1.19585 1.19932 0.87423 0.89181 0.87899 0.86108 0.87937 0.85404 0.85138 0.86853 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.25 10.33 71.24 0.74 -3.51 15 2 C 0.35 12.21 6.98 29.10 0.20 12.42 15 3 O -0.50 -22.66 16.77 -1.45 -0.02 -22.68 15 4 C -0.11 -3.88 5.14 29.10 0.15 -3.73 15 5 C -0.17 -7.57 4.43 -19.41 -0.09 -7.66 15 6 C -0.10 -4.08 9.66 22.22 0.21 -3.87 15 7 C -0.21 -9.00 10.05 22.45 0.23 -8.77 15 8 C -0.11 -5.17 9.81 22.24 0.22 -4.95 15 9 C -0.10 -5.46 5.94 22.81 0.14 -5.33 15 10 Cl -0.10 -5.25 24.94 -2.72 -0.07 -5.31 15 11 C 0.11 5.63 5.26 -21.27 -0.11 5.52 15 12 C -0.50 -26.48 7.33 23.44 0.17 -26.31 15 13 H 0.07 3.63 7.52 -2.91 -0.02 3.61 15 14 C 0.07 3.40 3.75 85.25 0.32 3.72 15 15 N -0.81 -42.27 11.17 21.83 0.24 -42.02 15 16 Si 0.94 39.71 29.61 68.60 2.03 41.74 15 17 H -0.25 -9.94 7.11 99.48 0.71 -9.23 15 18 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 20 H 0.11 1.74 8.00 -2.39 -0.02 1.72 15 21 H 0.09 1.97 8.14 -2.39 -0.02 1.95 15 22 H 0.10 1.91 8.14 -2.39 -0.02 1.89 15 23 H 0.12 3.29 8.05 -2.39 -0.02 3.27 15 24 H 0.10 3.77 7.31 -2.39 -0.02 3.75 15 25 H 0.13 4.31 8.06 -2.91 -0.02 4.28 15 26 H 0.13 4.51 8.06 -2.91 -0.02 4.48 15 27 H 0.11 4.76 8.06 -2.91 -0.02 4.74 15 28 H 0.28 13.81 8.30 -92.71 -0.77 13.04 15 Total: -1.00 -64.29 262.15 5.52 -58.77 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 1.16 Total: 11.98 kcal Atomic # 6 Polarization: -44.64 SS G_CDS: 2.18 Total: -42.47 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.24 Total: -42.02 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.02 Total: -22.68 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Atomic # 17 Polarization: -5.25 SS G_CDS: -0.07 Total: -5.31 kcal Total: -64.29 5.52 -58.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306601379.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.832 kcal (2) G-P(sol) polarization free energy of solvation -64.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds