Wall clock time and date at job start Mon Mar 30 2020 05:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46897 * 2 1 4 4 O 1.21312 * 120.00014 * 0.02562 * 3 2 1 5 5 C 1.46791 * 119.99907 * 180.02562 * 3 2 1 6 6 C 1.40366 * 119.93121 * 359.72328 * 5 3 2 7 7 C 1.36160 * 120.08921 * 180.27416 * 6 5 3 8 8 C 1.41007 * 119.95225 * 0.02562 * 7 6 5 9 9 C 1.41020 * 120.06302 * 180.02562 * 8 7 6 10 10 H 1.08006 * 119.99634 * 24.69130 * 9 8 7 11 11 C 1.40315 * 120.00057 * 204.69275 * 9 8 7 12 12 N 1.30588 * 120.00317 * 17.88445 * 11 9 8 13 13 Si 1.86803 * 120.00019 * 197.87889 * 11 9 8 14 14 H 1.48501 * 109.46831 * 59.99877 * 13 11 9 15 15 H 1.48498 * 109.47273 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47040 * 300.00004 * 13 11 9 17 17 C 1.40874 * 119.87574 * 359.97438 * 8 7 6 18 18 C 1.36404 * 119.90462 * 0.02562 * 17 8 7 19 19 Cl 1.73598 * 119.97844 * 179.97438 * 18 17 8 20 20 H 1.08995 * 109.47492 * 299.99561 * 1 2 3 21 21 H 1.08999 * 109.47039 * 59.99772 * 1 2 3 22 22 H 1.09001 * 109.47106 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47250 * 240.00741 * 2 1 3 24 24 H 1.08999 * 109.47039 * 120.00228 * 2 1 3 25 25 H 1.07998 * 119.95313 * 0.25798 * 6 5 3 26 26 H 1.07998 * 120.02165 * 179.97438 * 7 6 5 27 27 H 0.96997 * 120.00557 * 180.02562 * 12 11 9 28 28 H 1.07995 * 120.05000 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2439 2.3429 0.0005 5 6 3.4755 1.6892 -0.0006 6 6 4.3864 0.6212 0.0048 7 6 5.7257 0.8664 0.0099 8 6 6.1982 2.1949 0.0104 9 6 7.5849 2.4515 0.0151 10 1 8.2719 1.7137 -0.3725 11 6 8.0720 3.6652 0.5234 12 7 7.3178 4.3991 1.2967 13 14 9.7997 4.2313 0.0942 14 1 9.9186 4.3853 -1.3780 15 1 10.0715 5.5345 0.7523 16 1 10.7826 3.2238 0.5676 17 6 5.2825 3.2654 0.0050 18 6 3.9419 3.0135 -0.0001 19 17 2.8118 4.3313 -0.0060 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5137 -0.8901 24 1 1.8933 -0.5139 0.8900 25 1 4.0244 -0.3963 0.0051 26 1 6.4256 0.0438 0.0144 27 1 7.6544 5.2383 1.6477 28 1 5.6413 4.2840 0.0050 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306612420.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:20 Heat of formation + Delta-G solvation = -54.005045 kcal Electronic energy + Delta-G solvation = -14246.352129 eV Core-core repulsion = 11672.850740 eV Total energy + Delta-G solvation = -2573.501390 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.47161 -38.86321 -37.07096 -35.71445 -33.62251 -31.94032 -31.21757 -28.19060 -25.35439 -23.51380 -22.41923 -20.30805 -19.46006 -17.77807 -17.00964 -16.26211 -16.13036 -15.99618 -15.09736 -14.75215 -14.36047 -14.28432 -13.79643 -13.40192 -13.14224 -12.98101 -12.82081 -12.55911 -12.45502 -12.09161 -11.92015 -11.88131 -11.73505 -11.57633 -11.13398 -9.92972 -9.53668 -9.41825 -8.86018 -6.57035 0.20017 1.00266 1.35380 1.40576 1.51614 1.57566 1.89531 2.12437 2.65983 3.53308 3.55326 4.22047 4.36434 4.38236 4.62988 4.76486 4.90852 4.97475 5.03981 5.13565 5.15959 5.16151 5.33737 5.39287 5.70966 5.82308 5.91532 6.08048 6.39599 6.65400 6.75437 7.08179 8.06773 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.040135 B = 0.007116 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.471235 B = 3933.776537 C = 4539.004921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.158 4.158 3 C 0.385 3.615 4 O -0.511 6.511 5 C -0.331 4.331 6 C -0.017 4.017 7 C -0.248 4.248 8 C 0.107 3.893 9 C -0.456 4.456 10 H 0.101 0.899 11 C 0.033 3.967 12 N -0.794 5.794 13 Si 0.990 3.010 14 H -0.257 1.257 15 H -0.269 1.269 16 H -0.250 1.250 17 C -0.205 4.205 18 C 0.034 3.966 19 Cl -0.094 7.094 20 H 0.042 0.958 21 H 0.044 0.956 22 H 0.085 0.915 23 H 0.111 0.889 24 H 0.109 0.891 25 H 0.151 0.849 26 H 0.124 0.876 27 H 0.298 0.702 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.226 -6.169 -1.649 6.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.196 4.196 3 C 0.270 3.730 4 O -0.393 6.393 5 C -0.334 4.334 6 C -0.036 4.036 7 C -0.267 4.267 8 C 0.104 3.896 9 C -0.483 4.483 10 H 0.119 0.881 11 C -0.188 4.188 12 N -0.416 5.416 13 Si 0.809 3.191 14 H -0.181 1.181 15 H -0.193 1.193 16 H -0.173 1.173 17 C -0.225 4.225 18 C 0.007 3.993 19 Cl -0.065 7.065 20 H 0.062 0.938 21 H 0.063 0.937 22 H 0.104 0.896 23 H 0.129 0.871 24 H 0.127 0.873 25 H 0.169 0.831 26 H 0.142 0.858 27 H 0.110 0.890 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.756 -5.375 -1.483 5.846 hybrid contribution 0.644 0.907 0.064 1.115 sum -1.111 -4.468 -1.418 4.818 Atomic orbital electron populations 1.21536 0.93860 1.02384 1.01481 1.21930 0.97862 0.94170 1.05596 1.22612 0.87481 0.92137 0.70750 1.90489 1.59018 1.48760 1.41000 1.19819 0.95764 0.91708 1.26144 1.20892 0.92102 0.97686 0.92873 1.21068 0.95733 0.95816 1.14075 1.18058 0.93782 0.91586 0.86217 1.20245 0.92729 1.02074 1.33213 0.88060 1.27104 1.04865 0.95166 0.91626 1.69758 1.40076 1.11852 1.19933 0.85111 0.75584 0.78473 0.79929 1.18138 1.19346 1.17332 1.20885 0.90182 1.00221 1.11240 1.20977 0.89934 0.88147 1.00274 1.98276 1.62694 1.48799 1.96699 0.93849 0.93711 0.89623 0.87059 0.87279 0.83127 0.85787 0.89047 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.20 71.98 0.66 -2.76 15 2 C -0.16 -4.32 5.01 29.85 0.15 -4.17 15 3 C 0.39 15.27 7.10 27.93 0.20 15.47 15 4 O -0.51 -23.16 13.55 -3.13 -0.04 -23.20 15 5 C -0.33 -14.61 5.89 -19.99 -0.12 -14.73 15 6 C -0.02 -0.66 9.40 22.30 0.21 -0.46 15 7 C -0.25 -10.64 9.73 22.46 0.22 -10.42 15 8 C 0.11 5.34 5.58 -21.27 -0.12 5.22 15 9 C -0.46 -21.81 9.04 23.46 0.21 -21.60 15 10 H 0.10 4.43 7.91 -2.91 -0.02 4.41 15 11 C 0.03 1.48 5.13 85.38 0.44 1.92 15 12 N -0.79 -38.62 10.95 21.89 0.24 -38.38 15 13 Si 0.99 33.86 29.60 68.60 2.03 35.89 15 14 H -0.26 -8.68 7.11 99.48 0.71 -7.97 15 15 H -0.27 -8.89 7.11 99.48 0.71 -8.19 15 16 H -0.25 -8.06 7.11 99.48 0.71 -7.35 15 17 C -0.21 -10.68 8.40 22.49 0.19 -10.49 15 18 C 0.03 1.68 6.31 22.37 0.14 1.82 15 19 Cl -0.09 -4.44 25.97 -2.72 -0.07 -4.51 15 20 H 0.04 1.20 8.10 -2.39 -0.02 1.18 15 21 H 0.04 1.22 8.10 -2.39 -0.02 1.20 15 22 H 0.08 1.58 8.14 -2.39 -0.02 1.56 15 23 H 0.11 2.55 8.08 -2.39 -0.02 2.53 15 24 H 0.11 2.55 8.07 -2.39 -0.02 2.53 15 25 H 0.15 4.34 7.01 -2.91 -0.02 4.32 15 26 H 0.12 4.68 8.06 -2.91 -0.02 4.66 15 27 H 0.30 13.09 8.29 -92.71 -0.77 12.32 15 28 H 0.11 6.03 6.16 -2.91 -0.02 6.01 15 Total: -1.00 -58.69 260.09 5.51 -53.18 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.17 Total: 17.21 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 2.18 Total: -40.20 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.24 Total: -38.38 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.04 Total: -23.20 kcal Atomic # 14 Polarization: 33.86 SS G_CDS: 2.03 Total: 35.89 kcal Atomic # 17 Polarization: -4.44 SS G_CDS: -0.07 Total: -4.51 kcal Total: -58.69 5.51 -53.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306612420.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.821 kcal (2) G-P(sol) polarization free energy of solvation -58.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds