Wall clock time and date at job start Mon Mar 30 2020 05:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50690 * 109.47253 * 2 1 4 4 O 1.21315 * 120.00386 * 359.97438 * 3 2 1 5 5 C 1.46872 * 119.99956 * 180.02562 * 3 2 1 6 6 C 1.40370 * 119.91204 * 359.97438 * 5 3 2 7 7 C 1.36145 * 120.11822 * 179.68922 * 6 5 3 8 8 C 1.41000 * 119.92980 * 0.62968 * 7 6 5 9 9 C 1.40916 * 120.08207 * 179.66265 * 8 7 6 10 10 H 1.08007 * 119.99824 * 154.00508 * 9 8 7 11 11 C 1.40345 * 120.00444 * 334.00920 * 9 8 7 12 12 N 1.30583 * 120.00006 * 343.17566 * 11 9 8 13 13 Si 1.86804 * 120.00121 * 163.17734 * 11 9 8 14 14 H 1.48499 * 109.47131 * 265.59237 * 13 11 9 15 15 H 1.48503 * 109.46878 * 25.59343 * 13 11 9 16 16 H 1.48503 * 109.47034 * 145.59087 * 13 11 9 17 17 C 1.41074 * 119.82619 * 359.39775 * 8 7 6 18 18 Cl 1.73605 * 120.05374 * 180.29742 * 17 8 7 19 19 C 1.36398 * 119.88726 * 0.27016 * 17 8 7 20 20 H 1.09007 * 109.47509 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47015 * 300.00229 * 1 2 3 22 22 H 1.08995 * 109.47368 * 59.99767 * 1 2 3 23 23 H 1.09001 * 109.47015 * 239.99771 * 2 1 3 24 24 H 1.09000 * 109.46690 * 120.00119 * 2 1 3 25 25 H 1.08000 * 119.94061 * 0.02562 * 6 5 3 26 26 H 1.07998 * 120.03899 * 180.29963 * 7 6 5 27 27 H 0.96995 * 120.00295 * 180.02562 * 12 11 9 28 28 H 1.07993 * 119.97107 * 180.02562 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2441 2.3429 -0.0005 5 6 3.4763 1.6890 -0.0006 6 6 4.3868 0.6207 -0.0006 7 6 5.7262 0.8646 -0.0075 8 6 6.1995 2.1928 -0.0012 9 6 7.5852 2.4489 -0.0012 10 1 7.9630 3.3758 -0.4068 11 6 8.4743 1.4995 0.5259 12 7 8.0290 0.5474 1.3007 13 14 10.2949 1.5979 0.1190 14 1 10.5898 0.7243 -1.0450 15 1 10.6531 3.0006 -0.2114 16 1 11.0889 1.1470 1.2902 17 6 5.2821 3.2645 -0.0007 18 17 5.8583 4.9022 -0.0008 19 6 3.9418 3.0119 -0.0006 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 4.0242 -0.3966 -0.0006 26 1 6.4256 0.0416 -0.0124 27 1 8.6435 -0.1085 1.6653 28 1 3.2383 3.8313 -0.0006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306613599.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:23 Heat of formation + Delta-G solvation = -50.576247 kcal Electronic energy + Delta-G solvation = -14135.418540 eV Core-core repulsion = 11562.065834 eV Total energy + Delta-G solvation = -2573.352706 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.88788 -37.25570 -35.09434 -34.06245 -32.40079 -30.27248 -29.49024 -26.55382 -23.98142 -21.62499 -20.99619 -18.73732 -17.71667 -16.12597 -15.56868 -14.81518 -14.59350 -14.18804 -13.64905 -13.23396 -12.72375 -12.67515 -12.21781 -12.02214 -11.80213 -11.41442 -11.37058 -11.30399 -10.91160 -10.78963 -10.43998 -10.18846 -9.90146 -9.60545 -9.53696 -8.70862 -7.77727 -7.65178 -7.21098 -4.77809 1.87242 2.73366 2.81547 2.87931 2.92275 3.44785 3.54361 3.64037 4.34578 4.94028 5.28055 5.43747 5.50007 5.77654 6.05484 6.10167 6.15086 6.26298 6.43631 6.47677 6.64199 6.76583 6.87463 7.18769 7.42817 7.52904 7.67104 7.81951 8.18000 8.36305 8.47525 8.56846 9.68621 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029936 B = 0.007434 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.110603 B = 3765.426944 C = 4615.716549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.167 4.167 3 C 0.400 3.600 4 O -0.506 6.506 5 C -0.309 4.309 6 C -0.051 4.051 7 C -0.173 4.173 8 C 0.134 3.866 9 C -0.417 4.417 10 H 0.096 0.904 11 C 0.073 3.927 12 N -0.759 5.759 13 Si 0.918 3.082 14 H -0.263 1.263 15 H -0.256 1.256 16 H -0.272 1.272 17 C -0.152 4.152 18 Cl -0.115 7.115 19 C -0.008 4.008 20 H 0.051 0.949 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.126 0.874 27 H 0.291 0.709 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.341 -3.131 -1.415 3.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.205 4.205 3 C 0.286 3.714 4 O -0.388 6.388 5 C -0.312 4.312 6 C -0.070 4.070 7 C -0.193 4.193 8 C 0.129 3.871 9 C -0.443 4.443 10 H 0.114 0.886 11 C -0.151 4.151 12 N -0.381 5.381 13 Si 0.740 3.260 14 H -0.187 1.187 15 H -0.179 1.179 16 H -0.197 1.197 17 C -0.179 4.179 18 Cl -0.086 7.086 19 C -0.028 4.028 20 H 0.070 0.930 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.119 0.881 26 H 0.144 0.856 27 H 0.102 0.898 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.609 -2.736 -1.253 3.413 hybrid contribution 0.987 -0.034 -0.005 0.987 sum -0.623 -2.770 -1.258 3.105 Atomic orbital electron populations 1.21553 0.94816 1.00648 1.02625 1.21913 0.97039 0.97758 1.03798 1.22082 0.88638 0.89776 0.70938 1.90406 1.58949 1.47781 1.41702 1.19375 0.93084 0.93250 1.25465 1.20689 0.93528 0.96444 0.96383 1.20921 0.94132 0.96435 1.07771 1.17603 0.92759 0.90290 0.86413 1.20059 0.90917 1.03046 1.30306 0.88585 1.26202 1.02869 0.93548 0.92450 1.69699 1.38863 1.10655 1.18872 0.86111 0.79935 0.80589 0.79324 1.18742 1.17892 1.19728 1.20418 0.92987 0.83450 1.21063 1.98215 1.90084 1.22492 1.97856 1.20386 0.93099 0.95814 0.93459 0.92963 0.92539 0.92548 0.89291 0.89246 0.88086 0.85619 0.89775 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.20 37.16 0.34 -1.60 15 2 C -0.17 -2.58 5.01 -27.89 -0.14 -2.72 15 3 C 0.40 8.07 7.11 -30.82 -0.22 7.85 15 4 O -0.51 -11.41 15.95 5.53 0.09 -11.33 15 5 C -0.31 -6.81 5.89 -104.85 -0.62 -7.43 15 6 C -0.05 -1.09 9.40 -39.53 -0.37 -1.46 15 7 C -0.17 -4.04 8.62 -39.29 -0.34 -4.38 15 8 C 0.13 3.29 5.57 -106.76 -0.59 2.69 15 9 C -0.42 -10.01 8.50 -37.78 -0.32 -10.33 15 10 H 0.10 2.27 7.11 -52.48 -0.37 1.89 15 11 C 0.07 1.62 5.15 -17.29 -0.09 1.53 15 12 N -0.76 -17.23 10.98 55.57 0.61 -16.62 15 13 Si 0.92 16.64 29.59 -169.99 -5.03 11.61 15 14 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 15 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 16 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 17 C -0.15 -3.63 6.33 -39.17 -0.25 -3.88 15 18 Cl -0.11 -2.49 27.56 -51.86 -1.43 -3.92 15 19 C -0.01 -0.19 9.30 -39.50 -0.37 -0.56 15 20 H 0.05 0.58 8.14 -51.92 -0.42 0.16 15 21 H 0.06 0.82 8.10 -51.93 -0.42 0.40 15 22 H 0.06 0.81 8.10 -51.93 -0.42 0.39 15 23 H 0.09 1.23 8.07 -51.93 -0.42 0.81 15 24 H 0.09 1.27 8.08 -51.93 -0.42 0.85 15 25 H 0.10 1.81 7.00 -52.49 -0.37 1.44 15 26 H 0.13 2.93 6.21 -52.49 -0.33 2.61 15 27 H 0.29 5.89 8.29 -40.82 -0.34 5.55 15 28 H 0.11 2.51 7.62 -52.49 -0.40 2.11 15 LS Contribution 262.19 15.07 3.95 3.95 Total: -1.00 -25.87 262.19 -7.48 -33.35 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -2.70 Total: 3.24 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -2.96 Total: -20.29 kcal Atomic # 7 Polarization: -17.23 SS G_CDS: 0.61 Total: -16.62 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 16.64 SS G_CDS: -5.03 Total: 11.61 kcal Atomic # 17 Polarization: -2.49 SS G_CDS: -1.43 Total: -3.92 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -25.87 -7.48 -33.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306613599.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.224 kcal (2) G-P(sol) polarization free energy of solvation -25.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds