Wall clock time and date at job start Mon Mar 30 2020 05:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00065 * 2 1 4 4 H 1.48504 * 109.47070 * 269.99803 * 3 2 1 5 5 H 1.48507 * 109.47254 * 29.99624 * 3 2 1 6 6 H 1.48500 * 109.47480 * 149.99859 * 3 2 1 7 7 C 1.37876 * 120.00475 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00629 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99686 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47310 * 180.02562 * 9 7 2 11 11 C 1.38233 * 119.88223 * 90.00061 * 10 9 7 12 12 C 1.39047 * 120.22831 * 180.02562 * 11 10 9 13 13 S 1.76202 * 120.00903 * 180.02562 * 12 11 10 14 14 C 1.38732 * 119.98552 * 359.97438 * 12 11 10 15 15 C 1.39494 * 119.75946 * 359.97438 * 14 12 11 16 16 C 1.47743 * 120.11045 * 179.97438 * 15 14 12 17 17 O 1.21468 * 120.00440 * 180.02562 * 16 15 14 18 18 O 1.34711 * 120.00226 * 0.02562 * 16 15 14 19 19 C 1.37985 * 119.88182 * 270.28151 * 10 9 7 20 20 H 0.96998 * 120.00176 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47271 * 60.00124 * 9 7 2 22 22 H 1.09005 * 109.47198 * 300.00033 * 9 7 2 23 23 H 1.08002 * 119.88692 * 0.04251 * 11 10 9 24 24 H 1.34503 * 102.99867 * 269.97524 * 13 12 11 25 25 H 1.07997 * 120.12085 * 180.02562 * 14 12 11 26 26 H 0.96700 * 117.00324 * 180.02562 * 18 16 15 27 27 H 1.08002 * 119.99595 * 359.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2304 -3.6445 0.0027 11 6 2.6779 -4.1669 1.2017 12 6 3.5818 -5.2234 1.2111 13 16 4.1480 -5.8853 2.7428 14 6 4.0371 -5.7570 0.0141 15 6 3.5843 -5.2301 -1.1955 16 6 4.0645 -5.7920 -2.4747 17 8 3.6693 -5.3315 -3.5269 18 8 4.9407 -6.8153 -2.4743 19 6 2.6816 -4.1643 -1.1932 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6248 -2.5563 0.8920 23 1 2.3240 -3.7533 2.1345 24 1 5.2413 -5.1473 3.0056 25 1 4.7389 -6.5779 0.0188 26 1 5.2264 -7.1491 -3.3358 27 1 2.3325 -3.7505 -2.1277 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306635556.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:59 Heat of formation + Delta-G solvation = -76.835756 kcal Electronic energy + Delta-G solvation = -13952.681728 eV Core-core repulsion = 11380.234030 eV Total energy + Delta-G solvation = -2572.447697 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.25362 -38.50448 -36.01733 -33.69462 -31.64733 -31.03567 -27.35924 -24.60796 -23.56236 -21.78129 -20.52430 -17.84678 -17.65433 -16.70779 -16.38488 -15.72708 -15.52744 -14.97468 -14.66389 -14.31923 -13.33090 -12.87664 -12.70369 -12.18461 -11.67660 -11.57708 -11.37578 -11.27233 -11.00858 -10.72723 -10.59037 -10.35296 -9.77461 -9.63719 -8.76280 -8.52879 -8.24075 -8.08679 -6.15232 -4.20384 0.89147 1.29165 1.84520 2.67995 2.94982 3.08429 3.24619 3.31347 3.34226 4.02576 4.37020 5.03910 5.17236 5.20344 5.44772 5.64160 5.72201 5.80481 6.24886 6.36681 6.48084 6.62664 6.76262 7.10963 7.39004 7.55809 7.79124 7.95020 8.15126 8.83807 9.44593 10.94618 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.007281 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.338253 B = 3844.799481 C = 4782.486759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.049 3.951 10 C -0.051 4.051 11 C -0.037 4.037 12 C -0.125 4.125 13 S -0.134 6.134 14 C -0.041 4.041 15 C -0.141 4.141 16 C 0.531 3.469 17 O -0.513 6.513 18 O -0.515 6.515 19 C -0.030 4.030 20 H 0.264 0.736 21 H 0.036 0.964 22 H 0.036 0.964 23 H 0.139 0.861 24 H 0.073 0.927 25 H 0.140 0.860 26 H 0.410 0.590 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.922 -11.784 0.495 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.075 0.925 9 C 0.012 3.988 10 C -0.052 4.052 11 C -0.057 4.057 12 C -0.236 4.236 13 S 0.023 5.977 14 C -0.062 4.062 15 C -0.144 4.144 16 C 0.375 3.625 17 O -0.403 6.403 18 O -0.327 6.327 19 C -0.048 4.048 20 H 0.074 0.926 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.157 0.843 24 H 0.037 0.963 25 H 0.157 0.843 26 H 0.268 0.732 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.658 -11.889 1.417 14.213 hybrid contribution 1.208 1.770 -1.360 2.538 sum 8.866 -10.119 0.056 13.454 Atomic orbital electron populations 1.69938 1.06025 1.27096 1.49740 1.24984 0.94893 0.99297 0.94851 0.86525 0.79775 0.83046 0.78308 1.20453 1.21021 1.19857 1.21008 0.92983 0.89762 1.52049 0.92488 1.18415 0.92279 0.88936 0.99204 1.20755 0.97433 0.96266 0.90795 1.21863 0.92694 0.91680 0.99496 1.21055 1.05147 1.02818 0.94618 1.85790 1.36098 1.50263 1.25541 1.21619 0.96812 0.97594 0.90167 1.18989 1.04255 1.01220 0.89926 1.20953 0.75363 0.76593 0.89570 1.90890 1.56126 1.59628 1.33634 1.84574 1.58746 1.48764 1.40569 1.21463 0.92049 0.91389 0.99913 0.92620 0.94611 0.94568 0.84337 0.96265 0.84252 0.73160 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 13.29 55.43 0.74 -24.66 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 15 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.52 -13.90 9.09 -34.44 -0.31 -14.21 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 15 9 C 0.05 1.17 5.09 -29.04 -0.15 1.02 15 10 C -0.05 -1.01 5.06 -104.72 -0.53 -1.54 15 11 C -0.04 -0.66 9.43 -39.28 -0.37 -1.03 15 12 C -0.12 -1.96 6.11 -39.10 -0.24 -2.20 15 13 S -0.13 -1.82 25.77 -107.50 -2.77 -4.59 15 14 C -0.04 -0.61 9.36 -38.93 -0.36 -0.98 15 15 C -0.14 -2.31 5.87 -105.01 -0.62 -2.93 15 16 C 0.53 8.05 8.27 34.62 0.29 8.34 15 17 O -0.51 -9.20 17.13 -19.24 -0.33 -9.53 15 18 O -0.51 -5.69 12.68 -40.52 -0.51 -6.21 15 19 C -0.03 -0.56 9.24 -39.14 -0.36 -0.92 15 20 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 21 H 0.04 0.91 8.08 -51.93 -0.42 0.49 15 22 H 0.04 0.90 8.08 -51.93 -0.42 0.48 15 23 H 0.14 2.39 8.06 -52.49 -0.42 1.97 15 24 H 0.07 0.93 9.07 97.61 0.89 1.82 15 25 H 0.14 1.78 7.61 -52.49 -0.40 1.38 15 26 H 0.41 2.52 9.11 45.56 0.42 2.94 15 27 H 0.14 2.72 7.64 -52.49 -0.40 2.32 15 LS Contribution 266.42 15.07 4.01 4.01 Total: -1.00 -29.81 266.42 -6.94 -36.75 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -0.30 Total: 1.10 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -2.75 Total: -12.85 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.74 Total: -24.66 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.84 Total: -15.74 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -2.77 Total: -4.59 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.81 -6.94 -36.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306635556.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.082 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds