Wall clock time and date at job start Mon Mar 30 2020 05:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00065 * 2 1 4 4 H 1.48504 * 109.47070 * 269.99803 * 3 2 1 5 5 H 1.48507 * 109.47254 * 29.99624 * 3 2 1 6 6 H 1.48500 * 109.47480 * 149.99859 * 3 2 1 7 7 C 1.37876 * 120.00475 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00629 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99686 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47310 * 180.02562 * 9 7 2 11 11 C 1.38233 * 119.88223 * 90.00061 * 10 9 7 12 12 C 1.39047 * 120.22831 * 180.02562 * 11 10 9 13 13 S 1.76202 * 120.00903 * 180.02562 * 12 11 10 14 14 C 1.38732 * 119.98552 * 359.97438 * 12 11 10 15 15 C 1.39494 * 119.75946 * 359.97438 * 14 12 11 16 16 C 1.47743 * 120.11045 * 179.97438 * 15 14 12 17 17 O 1.21468 * 120.00440 * 180.02562 * 16 15 14 18 18 O 1.34711 * 120.00226 * 0.02562 * 16 15 14 19 19 C 1.37985 * 119.88182 * 270.28151 * 10 9 7 20 20 H 0.96998 * 120.00176 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47271 * 60.00124 * 9 7 2 22 22 H 1.09005 * 109.47198 * 300.00033 * 9 7 2 23 23 H 1.08002 * 119.88692 * 0.04251 * 11 10 9 24 24 H 1.34503 * 102.99867 * 269.97524 * 13 12 11 25 25 H 1.07997 * 120.12085 * 180.02562 * 14 12 11 26 26 H 0.96700 * 117.00324 * 180.02562 * 18 16 15 27 27 H 1.08002 * 119.99595 * 359.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2304 -3.6445 0.0027 11 6 2.6779 -4.1669 1.2017 12 6 3.5818 -5.2234 1.2111 13 16 4.1480 -5.8853 2.7428 14 6 4.0371 -5.7570 0.0141 15 6 3.5843 -5.2301 -1.1955 16 6 4.0645 -5.7920 -2.4747 17 8 3.6693 -5.3315 -3.5269 18 8 4.9407 -6.8153 -2.4743 19 6 2.6816 -4.1643 -1.1932 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6248 -2.5563 0.8920 23 1 2.3240 -3.7533 2.1345 24 1 5.2413 -5.1473 3.0056 25 1 4.7389 -6.5779 0.0188 26 1 5.2264 -7.1491 -3.3358 27 1 2.3325 -3.7505 -2.1277 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306635556.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:59 Heat of formation + Delta-G solvation = -95.218661 kcal Electronic energy + Delta-G solvation = -13953.478870 eV Core-core repulsion = 11380.234030 eV Total energy + Delta-G solvation = -2573.244840 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.47109 -39.84239 -37.11213 -35.57549 -33.37461 -32.39454 -29.18054 -25.88378 -25.42150 -23.16824 -21.86152 -19.01089 -18.88444 -18.51619 -17.84278 -17.03815 -16.69505 -16.58312 -16.33225 -15.59006 -14.63376 -14.56220 -14.23811 -13.72209 -13.39644 -13.08434 -12.84294 -12.64259 -12.57358 -12.51642 -12.13346 -11.69663 -11.60088 -11.44268 -10.63180 -10.08395 -9.74775 -9.15236 -8.23682 -6.36375 -0.44480 0.01988 0.63161 1.37788 1.39366 1.42555 1.50531 1.85267 1.99239 2.37104 2.69411 3.08946 3.75913 3.94939 4.05624 4.25566 4.35042 4.43392 4.88799 4.99896 5.14349 5.20927 5.30718 5.52759 5.66429 5.70192 5.76505 6.11216 6.75433 6.94890 7.32561 8.86170 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.007281 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.338253 B = 3844.799481 C = 4782.486759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.961 3.039 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.055 0.945 9 C 0.056 3.944 10 C -0.073 4.073 11 C -0.039 4.039 12 C -0.126 4.126 13 S -0.109 6.109 14 C -0.020 4.020 15 C -0.142 4.142 16 C 0.542 3.458 17 O -0.547 6.547 18 O -0.496 6.496 19 C -0.042 4.042 20 H 0.267 0.733 21 H 0.009 0.991 22 H 0.018 0.982 23 H 0.139 0.861 24 H 0.084 0.916 25 H 0.173 0.827 26 H 0.435 0.565 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.250 -13.042 1.082 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.571 4.571 8 H 0.073 0.927 9 C 0.019 3.981 10 C -0.075 4.075 11 C -0.060 4.060 12 C -0.238 4.238 13 S 0.048 5.952 14 C -0.040 4.040 15 C -0.145 4.145 16 C 0.387 3.613 17 O -0.439 6.439 18 O -0.310 6.310 19 C -0.060 4.060 20 H 0.075 0.925 21 H 0.028 0.972 22 H 0.036 0.964 23 H 0.157 0.843 24 H 0.048 0.952 25 H 0.190 0.810 26 H 0.298 0.702 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.012 -13.181 1.997 16.672 hybrid contribution 0.552 2.016 -1.511 2.580 sum 10.565 -11.165 0.485 15.379 Atomic orbital electron populations 1.70053 1.07543 1.28053 1.50847 1.25844 0.95710 1.02891 0.94490 0.85502 0.78692 0.78769 0.78443 1.20015 1.20402 1.19014 1.21351 0.93078 0.91169 1.51515 0.92685 1.18138 0.92687 0.90296 0.96961 1.20309 0.98320 0.96367 0.92493 1.21851 0.93229 0.92440 0.98481 1.21214 1.04226 1.01772 0.96573 1.85749 1.36358 1.49393 1.23674 1.21963 0.95832 0.97236 0.88972 1.19050 1.03499 1.00424 0.91538 1.20624 0.75404 0.76921 0.88347 1.90891 1.57516 1.60942 1.34572 1.84496 1.57040 1.46841 1.42588 1.21290 0.93307 0.92730 0.98673 0.92453 0.97243 0.96390 0.84343 0.95198 0.80962 0.70231 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 13.29 21.45 0.28 -54.09 15 2 C 0.01 0.53 5.46 84.66 0.46 1.00 15 3 Si 0.96 43.42 29.54 68.60 2.03 45.45 15 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 7 C -0.53 -29.37 9.09 25.60 0.23 -29.13 15 8 H 0.05 2.98 7.74 -2.91 -0.02 2.95 15 9 C 0.06 2.86 5.09 29.10 0.15 3.01 15 10 C -0.07 -3.02 5.06 -19.93 -0.10 -3.12 15 11 C -0.04 -1.40 9.43 22.46 0.21 -1.18 15 12 C -0.13 -3.68 6.11 22.58 0.14 -3.54 15 13 S -0.11 -2.59 25.77 -56.49 -1.46 -4.05 15 14 C -0.02 -0.52 9.36 22.69 0.21 -0.31 15 15 C -0.14 -4.46 5.87 -20.11 -0.12 -4.57 15 16 C 0.54 15.34 8.27 70.34 0.58 15.92 15 17 O -0.55 -19.21 17.13 19.94 0.34 -18.86 15 18 O -0.50 -9.06 12.68 -56.21 -0.71 -9.77 15 19 C -0.04 -1.59 9.24 22.56 0.21 -1.39 15 20 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 21 H 0.01 0.51 8.08 -2.39 -0.02 0.49 15 22 H 0.02 0.95 8.08 -2.38 -0.02 0.93 15 23 H 0.14 4.80 8.06 -2.91 -0.02 4.77 15 24 H 0.08 1.83 9.07 73.35 0.67 2.50 15 25 H 0.17 3.53 7.61 -2.91 -0.02 3.50 15 26 H 0.44 3.61 9.11 -74.06 -0.67 2.94 15 27 H 0.12 5.05 7.64 -2.91 -0.02 5.03 15 Total: -1.00 -65.08 266.42 3.67 -61.41 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 1.21 Total: 3.25 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 1.98 Total: -23.33 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.28 Total: -54.09 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.37 Total: -28.63 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -2.59 SS G_CDS: -1.46 Total: -4.05 kcal Total: -65.08 3.67 -61.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306635556.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.814 kcal (2) G-P(sol) polarization free energy of solvation -65.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds