Wall clock time and date at job start Mon Mar 30 2020 05:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30952 * 1 3 3 Si 1.86808 * 119.99908 * 2 1 4 4 H 1.48503 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47050 * 300.00304 * 3 2 1 6 6 H 1.48494 * 109.46956 * 60.00118 * 3 2 1 7 7 C 1.39878 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99779 * 199.87387 * 7 2 1 9 9 C 1.40433 * 120.00287 * 19.86923 * 7 2 1 10 10 C 1.47967 * 120.34486 * 217.22139 * 9 7 2 11 11 C 1.40108 * 129.13076 * 359.97438 * 10 9 7 12 12 C 1.32628 * 115.79860 * 180.27044 * 11 10 9 13 13 S 1.75517 * 110.62123 * 359.97438 * 12 11 10 14 14 C 1.39367 * 118.13959 * 180.26612 * 10 9 7 15 15 C 1.40382 * 120.09239 * 359.76365 * 14 10 9 16 16 O 1.35696 * 119.32380 * 179.97438 * 15 14 10 17 17 C 1.38618 * 121.35496 * 0.02562 * 15 14 10 18 18 C 1.37752 * 120.96534 * 359.97438 * 17 15 14 19 19 F 1.35093 * 119.93474 * 179.97438 * 18 17 15 20 20 H 0.97001 * 119.99951 * 359.97438 * 1 2 3 21 21 H 1.07999 * 122.10177 * 0.23824 * 11 10 9 22 22 H 1.07999 * 124.69142 * 180.02562 * 12 11 10 23 23 H 0.96692 * 114.00185 * 270.02425 * 16 15 14 24 24 H 1.08004 * 119.51757 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2435 1.6178 0.0000 4 1 3.7036 1.3465 -0.0006 5 1 1.8847 2.3965 -1.2125 6 1 1.8848 2.3964 1.2125 7 6 2.0089 -1.2114 -0.0005 8 1 3.0408 -1.2393 0.3174 9 6 1.3696 -2.3912 -0.4144 10 6 1.6563 -3.6744 0.2643 11 6 2.5247 -3.9350 1.3324 12 6 2.5828 -5.1976 1.7343 13 16 1.5133 -6.2026 0.7715 14 6 1.0002 -4.8179 -0.1876 15 6 0.0923 -4.7331 -1.2550 16 8 -0.5375 -5.8564 -1.6826 17 6 -0.1733 -3.5256 -1.8817 18 6 0.4472 -2.3647 -1.4756 19 9 0.1732 -1.1993 -2.1015 20 1 -0.4850 0.8401 0.0004 21 1 3.1104 -3.1567 1.7990 22 1 3.2020 -5.5575 2.5427 23 1 -0.0629 -6.3332 -2.3772 24 1 -0.8770 -3.4944 -2.7004 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306649586.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:27 Heat of formation + Delta-G solvation = -50.295606 kcal Electronic energy + Delta-G solvation = -14365.415429 eV Core-core repulsion = 11670.658294 eV Total energy + Delta-G solvation = -2694.757135 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.11227 -38.39063 -36.34307 -34.24544 -32.88323 -29.46358 -28.08113 -25.01219 -22.69576 -21.43548 -19.50824 -18.05906 -17.54960 -16.20531 -15.30690 -15.21145 -14.92620 -14.10049 -13.91824 -13.54196 -13.22621 -12.54464 -12.41224 -12.19895 -11.66772 -11.51450 -11.34111 -10.99555 -10.64909 -10.13648 -9.98234 -9.80824 -9.62918 -9.29342 -8.17218 -7.44222 -7.18869 -6.74604 -4.62352 1.67394 2.35185 2.51543 2.91661 2.93254 2.96470 3.00164 3.34052 3.71898 4.22922 4.99034 5.20584 5.62589 5.92255 6.04217 6.27712 6.55031 6.60949 6.78780 6.89770 7.02054 7.20907 7.44624 7.47723 7.70615 8.06604 8.31688 8.40504 8.65720 9.81297 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.031229 B = 0.009876 C = 0.007774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.392497 B = 2834.430410 C = 3600.852145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.427 4.427 8 H 0.094 0.906 9 C 0.123 3.877 10 C -0.153 4.153 11 C -0.062 4.062 12 C -0.266 4.266 13 S 0.027 5.973 14 C -0.100 4.100 15 C -0.002 4.002 16 O -0.492 6.492 17 C -0.106 4.106 18 C 0.016 3.984 19 F -0.141 7.141 20 H 0.291 0.709 21 H 0.130 0.870 22 H 0.150 0.850 23 H 0.356 0.644 24 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.229 -2.834 -0.406 4.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.153 4.153 3 Si 0.741 3.259 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.196 1.196 7 C -0.454 4.454 8 H 0.112 0.888 9 C 0.117 3.883 10 C -0.160 4.160 11 C -0.092 4.092 12 C -0.399 4.399 13 S 0.288 5.712 14 C -0.216 4.216 15 C -0.053 4.053 16 O -0.299 6.299 17 C -0.128 4.128 18 C -0.007 4.007 19 F -0.119 7.119 20 H 0.102 0.898 21 H 0.148 0.852 22 H 0.167 0.833 23 H 0.208 0.792 24 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.284 -4.009 0.114 4.615 hybrid contribution 0.806 2.263 -0.393 2.434 sum 3.091 -1.746 -0.279 3.561 Atomic orbital electron populations 1.69815 1.08036 1.30835 1.28279 1.26014 0.94826 1.01912 0.92508 0.86079 0.80938 0.79947 0.78969 1.17940 1.19174 1.19587 1.19475 0.99260 0.90967 1.35651 0.88783 1.18334 0.90244 0.90903 0.88840 1.18768 1.03961 0.93124 1.00149 1.19681 0.97843 0.95718 0.95910 1.24678 1.09775 0.96993 1.08478 1.83555 1.43988 1.11720 1.31927 1.22673 1.01564 0.96085 1.01295 1.16586 1.03316 0.85588 0.99829 1.84889 1.48932 1.37851 1.58250 1.20575 0.99986 0.91712 1.00507 1.17042 1.05462 0.80623 0.97562 1.91334 1.92913 1.46915 1.80772 0.89765 0.85223 0.83279 0.79173 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.78 11.15 55.55 0.62 -18.16 14 2 C 0.07 1.71 4.49 -17.31 -0.08 1.63 14 3 Si 0.92 17.65 29.60 -169.99 -5.03 12.62 14 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 14 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 14 6 H -0.27 -5.07 7.11 56.52 0.40 -4.67 14 7 C -0.43 -10.59 8.63 -38.14 -0.33 -10.92 14 8 H 0.09 2.18 7.92 -52.48 -0.42 1.76 14 9 C 0.12 3.16 5.58 -104.18 -0.58 2.58 14 10 C -0.15 -3.69 6.02 -104.79 -0.63 -4.32 14 11 C -0.06 -1.31 9.79 -40.78 -0.40 -1.70 14 12 C -0.27 -5.03 11.11 28.83 0.32 -4.71 14 13 S 0.03 0.54 23.26 -107.50 -2.50 -1.96 14 14 C -0.10 -2.33 6.43 -38.36 -0.25 -2.58 14 15 C 0.00 -0.05 6.72 -38.64 -0.26 -0.31 14 16 O -0.49 -9.89 13.43 -18.79 -0.25 -10.14 14 17 C -0.11 -2.48 9.85 -39.62 -0.39 -2.87 14 18 C 0.02 0.41 6.65 -38.86 -0.26 0.15 14 19 F -0.14 -3.65 14.26 2.25 0.03 -3.62 14 20 H 0.29 6.59 8.30 -40.82 -0.34 6.25 14 21 H 0.13 2.52 8.04 -52.49 -0.42 2.10 14 22 H 0.15 2.32 8.06 -52.49 -0.42 1.89 14 23 H 0.36 5.42 9.06 45.56 0.41 5.84 14 24 H 0.11 2.42 8.06 -52.48 -0.42 2.00 14 LS Contribution 237.72 15.07 3.58 3.58 Total: -1.00 -27.88 237.72 -6.81 -34.69 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -0.40 Total: 6.04 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -2.85 Total: -23.04 kcal Atomic # 7 Polarization: -18.78 SS G_CDS: 0.62 Total: -18.16 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.25 Total: -10.14 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.03 Total: -3.62 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -2.50 Total: -1.96 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.88 -6.81 -34.69 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306649586.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.602 kcal (2) G-P(sol) polarization free energy of solvation -27.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds