Wall clock time and date at job start Mon Mar 30 2020 05:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30952 * 1 3 3 Si 1.86808 * 119.99908 * 2 1 4 4 H 1.48503 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47050 * 300.00304 * 3 2 1 6 6 H 1.48494 * 109.46956 * 60.00118 * 3 2 1 7 7 C 1.39878 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99779 * 199.87387 * 7 2 1 9 9 C 1.40433 * 120.00287 * 19.86923 * 7 2 1 10 10 C 1.47967 * 120.34486 * 217.22139 * 9 7 2 11 11 C 1.40108 * 129.13076 * 359.97438 * 10 9 7 12 12 C 1.32628 * 115.79860 * 180.27044 * 11 10 9 13 13 S 1.75517 * 110.62123 * 359.97438 * 12 11 10 14 14 C 1.39367 * 118.13959 * 180.26612 * 10 9 7 15 15 C 1.40382 * 120.09239 * 359.76365 * 14 10 9 16 16 O 1.35696 * 119.32380 * 179.97438 * 15 14 10 17 17 C 1.38618 * 121.35496 * 0.02562 * 15 14 10 18 18 C 1.37752 * 120.96534 * 359.97438 * 17 15 14 19 19 F 1.35093 * 119.93474 * 179.97438 * 18 17 15 20 20 H 0.97001 * 119.99951 * 359.97438 * 1 2 3 21 21 H 1.07999 * 122.10177 * 0.23824 * 11 10 9 22 22 H 1.07999 * 124.69142 * 180.02562 * 12 11 10 23 23 H 0.96692 * 114.00185 * 270.02425 * 16 15 14 24 24 H 1.08004 * 119.51757 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2435 1.6178 0.0000 4 1 3.7036 1.3465 -0.0006 5 1 1.8847 2.3965 -1.2125 6 1 1.8848 2.3964 1.2125 7 6 2.0089 -1.2114 -0.0005 8 1 3.0408 -1.2393 0.3174 9 6 1.3696 -2.3912 -0.4144 10 6 1.6563 -3.6744 0.2643 11 6 2.5247 -3.9350 1.3324 12 6 2.5828 -5.1976 1.7343 13 16 1.5133 -6.2026 0.7715 14 6 1.0002 -4.8179 -0.1876 15 6 0.0923 -4.7331 -1.2550 16 8 -0.5375 -5.8564 -1.6826 17 6 -0.1733 -3.5256 -1.8817 18 6 0.4472 -2.3647 -1.4756 19 9 0.1732 -1.1993 -2.1015 20 1 -0.4850 0.8401 0.0004 21 1 3.1104 -3.1567 1.7990 22 1 3.2020 -5.5575 2.5427 23 1 -0.0629 -6.3332 -2.3772 24 1 -0.8770 -3.4944 -2.7004 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306649586.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:27 Heat of formation + Delta-G solvation = -67.606236 kcal Electronic energy + Delta-G solvation = -14366.166075 eV Core-core repulsion = 11670.658294 eV Total energy + Delta-G solvation = -2695.507780 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.02807 -40.11789 -38.01221 -35.97752 -34.60775 -31.24613 -29.80718 -26.79172 -24.40326 -23.20123 -21.22775 -19.81218 -19.23429 -17.94565 -17.09122 -16.89733 -16.65019 -15.79612 -15.75939 -15.22635 -14.89608 -14.30181 -14.06765 -13.92429 -13.33498 -13.29388 -12.91110 -12.60465 -12.22059 -11.79397 -11.70330 -11.49318 -11.33960 -11.02292 -9.89530 -9.19650 -8.91772 -8.44226 -6.44947 -0.04264 0.56828 0.85753 1.29705 1.36123 1.42628 1.53223 1.63357 2.13183 2.49118 3.21162 3.50998 3.96768 4.15321 4.44545 4.62152 4.83674 4.92731 5.04990 5.23701 5.27172 5.49261 5.69265 5.74664 5.91318 6.26129 6.56414 6.65301 7.06034 8.11684 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.031229 B = 0.009876 C = 0.007774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.392497 B = 2834.430410 C = 3600.852145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.034 3.966 3 Si 0.987 3.013 4 H -0.248 1.248 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.458 4.458 8 H 0.099 0.901 9 C 0.093 3.907 10 C -0.162 4.162 11 C -0.095 4.095 12 C -0.235 4.235 13 S 0.078 5.922 14 C -0.139 4.139 15 C 0.006 3.994 16 O -0.495 6.495 17 C -0.116 4.116 18 C -0.020 4.020 19 F -0.152 7.152 20 H 0.296 0.704 21 H 0.141 0.859 22 H 0.193 0.807 23 H 0.384 0.616 24 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.337 -4.120 0.556 6.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.186 4.186 3 Si 0.806 3.194 4 H -0.171 1.171 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.484 4.484 8 H 0.117 0.883 9 C 0.087 3.913 10 C -0.169 4.169 11 C -0.124 4.124 12 C -0.368 4.368 13 S 0.340 5.660 14 C -0.255 4.255 15 C -0.045 4.045 16 O -0.304 6.304 17 C -0.138 4.138 18 C -0.043 4.043 19 F -0.131 7.131 20 H 0.107 0.893 21 H 0.159 0.841 22 H 0.210 0.790 23 H 0.239 0.761 24 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.392 -5.336 1.063 6.411 hybrid contribution 0.457 2.326 -0.637 2.455 sum 3.849 -3.009 0.426 4.905 Atomic orbital electron populations 1.69866 1.09631 1.31895 1.30131 1.26890 0.95385 1.05020 0.91340 0.85063 0.79809 0.75450 0.79033 1.17065 1.19309 1.18486 1.19701 0.99686 0.91704 1.37354 0.88266 1.18709 0.91044 0.92200 0.89357 1.19204 1.04193 0.92947 1.00605 1.19818 0.98965 0.97268 0.96349 1.25280 1.07850 0.95945 1.07706 1.83362 1.42909 1.09365 1.30387 1.23064 1.02210 0.97879 1.02300 1.16674 1.02305 0.86082 0.99415 1.84788 1.49321 1.37028 1.59298 1.20761 1.00342 0.91563 1.01115 1.17344 1.07336 0.80920 0.98699 1.91276 1.93164 1.47664 1.81027 0.89296 0.84129 0.79021 0.76148 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.15 11.15 21.82 0.24 -40.91 14 2 C 0.03 1.63 4.49 85.22 0.38 2.01 14 3 Si 0.99 36.55 29.60 68.60 2.03 38.58 14 4 H -0.25 -8.70 7.11 99.48 0.71 -8.00 14 5 H -0.27 -9.87 7.11 99.48 0.71 -9.17 14 6 H -0.26 -9.10 7.11 99.48 0.71 -8.39 14 7 C -0.46 -23.32 8.63 23.20 0.20 -23.12 14 8 H 0.10 4.70 7.92 -2.91 -0.02 4.68 14 9 C 0.09 4.90 5.58 -19.58 -0.11 4.79 14 10 C -0.16 -7.77 6.02 -19.97 -0.12 -7.89 14 11 C -0.09 -3.83 9.79 21.56 0.21 -3.62 14 12 C -0.23 -7.97 11.11 66.66 0.74 -7.23 14 13 S 0.08 2.81 23.26 -56.49 -1.31 1.50 14 14 C -0.14 -6.27 6.43 23.06 0.15 -6.12 14 15 C 0.01 0.28 6.72 22.88 0.15 0.43 14 16 O -0.49 -18.87 13.43 -90.15 -1.21 -20.08 14 17 C -0.12 -5.51 9.85 22.25 0.22 -5.29 14 18 C -0.02 -1.06 6.65 22.74 0.15 -0.91 14 19 F -0.15 -8.28 14.26 44.97 0.64 -7.64 14 20 H 0.30 13.88 8.30 -92.71 -0.77 13.11 14 21 H 0.14 5.29 8.04 -2.91 -0.02 5.27 14 22 H 0.19 4.85 8.06 -2.91 -0.02 4.82 14 23 H 0.38 10.66 9.06 -74.06 -0.67 9.99 14 24 H 0.13 5.52 8.06 -2.91 -0.02 5.50 14 Total: -1.00 -60.64 237.72 2.95 -57.69 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.59 Total: 17.81 kcal Atomic # 6 Polarization: -48.92 SS G_CDS: 1.98 Total: -46.95 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.24 Total: -40.91 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -1.21 Total: -20.08 kcal Atomic # 9 Polarization: -8.28 SS G_CDS: 0.64 Total: -7.64 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.31 Total: 1.50 kcal Total: -60.64 2.95 -57.69 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306649586.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.919 kcal (2) G-P(sol) polarization free energy of solvation -60.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds