Wall clock time and date at job start Mon Mar 30 2020 05:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86800 * 120.00278 * 2 1 4 4 H 1.48497 * 109.46850 * 270.00145 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99797 * 3 2 1 6 6 H 1.48502 * 109.47154 * 149.99889 * 3 2 1 7 7 C 1.40047 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99852 * 179.72453 * 7 2 1 9 9 C 1.39785 * 120.00272 * 0.02562 * 7 2 1 10 10 S 1.75446 * 124.84884 * 359.41803 * 9 7 2 11 11 C 1.76004 * 91.83035 * 179.97438 * 10 9 7 12 12 C 1.39579 * 130.10845 * 179.97438 * 11 10 9 13 13 C 1.37782 * 120.58295 * 180.34709 * 12 11 10 14 14 C 1.38726 * 120.29899 * 0.02562 * 13 12 11 15 15 C 1.37624 * 120.40567 * 0.02562 * 14 13 12 16 16 O 1.35732 * 119.87981 * 179.97438 * 15 14 13 17 17 C 1.40194 * 110.01250 * 0.32127 * 11 10 9 18 18 C 1.37308 * 124.85204 * 179.72360 * 9 7 2 19 19 F 1.35100 * 122.54564 * 359.95768 * 18 9 7 20 20 H 0.96995 * 119.99897 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.70468 * 0.33050 * 12 11 10 22 22 H 1.08003 * 119.85147 * 180.02562 * 13 12 11 23 23 H 1.08002 * 119.79154 * 179.97438 * 14 13 12 24 24 H 0.96706 * 113.99874 * 270.01820 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4404 2.6526 0.7000 6 1 3.5405 1.4401 0.7001 7 6 2.0090 -1.2129 0.0005 8 1 3.0891 -1.2129 -0.0040 9 6 1.3101 -2.4234 0.0005 10 16 -0.4380 -2.5718 0.0145 11 6 -0.3454 -4.3293 0.0044 12 6 -1.3641 -5.2835 0.0084 13 6 -1.0648 -6.6285 0.0059 14 6 0.2564 -7.0515 -0.0002 15 6 1.2817 -6.1335 -0.0032 16 8 2.5705 -6.5592 -0.0087 17 6 0.9953 -4.7391 -0.0017 18 6 1.8936 -3.6664 -0.0044 19 9 3.2334 -3.8403 -0.0107 20 1 -0.4850 0.8400 -0.0004 21 1 -2.3959 -4.9648 0.0139 22 1 -1.8624 -7.3567 0.0086 23 1 0.4816 -8.1078 -0.0018 24 1 2.9473 -6.6838 0.8732 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306650795.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:35 Heat of formation + Delta-G solvation = -75.580229 kcal Electronic energy + Delta-G solvation = -14160.088776 eV Core-core repulsion = 11464.235218 eV Total energy + Delta-G solvation = -2695.853558 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.82857 -38.62425 -35.84389 -34.92587 -32.99251 -29.27643 -28.69831 -25.40046 -22.52139 -21.47199 -19.47334 -18.36876 -17.18805 -16.01220 -15.72843 -15.14778 -14.51930 -14.34032 -13.94754 -13.56118 -13.41004 -12.65727 -12.28895 -11.91969 -11.76694 -11.62719 -11.16628 -10.89717 -10.69414 -10.47477 -10.35246 -9.60373 -9.38625 -9.26060 -8.26395 -7.63421 -7.34968 -6.44176 -4.75133 1.81344 2.16966 2.72355 2.78392 2.85935 3.03077 3.34945 3.44428 3.62986 4.40792 4.73036 5.16877 5.69700 5.77711 5.94615 6.23204 6.51676 6.64779 6.74078 6.91077 6.95178 7.29042 7.30819 7.56181 7.67026 7.73646 8.15334 8.25104 8.52967 9.48638 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.038952 B = 0.008903 C = 0.007270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.661759 B = 3144.344633 C = 3850.603491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.051 3.949 3 Si 0.944 3.056 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.364 4.364 8 H 0.104 0.896 9 C 0.015 3.985 10 S 0.182 5.818 11 C -0.250 4.250 12 C -0.059 4.059 13 C -0.177 4.177 14 C -0.132 4.132 15 C 0.068 3.932 16 O -0.494 6.494 17 C -0.026 4.026 18 C -0.160 4.160 19 F -0.154 7.154 20 H 0.305 0.695 21 H 0.108 0.892 22 H 0.111 0.889 23 H 0.111 0.889 24 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 -1.053 1.614 2.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.766 3.234 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.397 4.397 8 H 0.122 0.878 9 C -0.105 4.105 10 S 0.442 5.558 11 C -0.365 4.365 12 C -0.081 4.081 13 C -0.198 4.198 14 C -0.153 4.153 15 C 0.022 3.978 16 O -0.302 6.302 17 C -0.035 4.035 18 C -0.185 4.185 19 F -0.134 7.134 20 H 0.118 0.882 21 H 0.126 0.874 22 H 0.129 0.871 23 H 0.129 0.871 24 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.212 0.161 1.012 3.372 hybrid contribution 1.794 -0.478 0.468 1.915 sum -1.418 -0.317 1.480 2.074 Atomic orbital electron populations 1.68617 1.07825 1.31498 1.31773 1.26367 0.95194 1.03231 0.92276 0.85657 0.80140 0.77592 0.80004 1.18554 1.19348 1.17787 1.19307 0.96185 0.88391 1.35834 0.87809 1.21424 0.96471 0.95053 0.97563 1.84782 1.02052 0.90797 1.78173 1.23309 0.95128 1.03047 1.15030 1.20188 0.96630 0.91826 0.99475 1.20378 0.95192 0.94845 1.09373 1.20759 0.92643 0.98016 1.03887 1.18291 0.83235 0.89502 1.06730 1.84773 1.24954 1.88250 1.32242 1.18098 0.92751 0.92380 1.00239 1.15977 0.77173 0.90950 1.34422 1.91215 1.29600 1.95930 1.96630 0.88165 0.87367 0.87118 0.87074 0.77500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.33 10.58 55.56 0.59 -16.75 14 2 C 0.05 1.15 5.50 -17.28 -0.09 1.05 14 3 Si 0.94 16.64 29.56 -169.99 -5.03 11.61 14 4 H -0.26 -4.55 7.11 56.52 0.40 -4.15 14 5 H -0.27 -4.53 7.11 56.52 0.40 -4.13 14 6 H -0.25 -4.50 7.11 56.52 0.40 -4.09 14 7 C -0.36 -9.12 9.13 -38.33 -0.35 -9.47 14 8 H 0.10 2.55 7.80 -52.48 -0.41 2.14 14 9 C 0.02 0.41 6.12 -39.34 -0.24 0.17 14 10 S 0.18 4.35 20.12 -107.50 -2.16 2.19 14 11 C -0.25 -5.95 6.46 -38.35 -0.25 -6.19 14 12 C -0.06 -1.20 10.05 -39.25 -0.39 -1.60 14 13 C -0.18 -3.33 10.03 -39.57 -0.40 -3.73 14 14 C -0.13 -2.62 9.93 -39.63 -0.39 -3.01 14 15 C 0.07 1.56 6.78 -38.23 -0.26 1.30 14 16 O -0.49 -10.55 12.75 -18.90 -0.24 -10.79 14 17 C -0.03 -0.65 5.87 -106.95 -0.63 -1.28 14 18 C -0.16 -4.33 7.44 -39.29 -0.29 -4.63 14 19 F -0.15 -4.19 16.39 2.25 0.04 -4.15 14 20 H 0.30 6.04 8.30 -40.82 -0.34 5.70 14 21 H 0.11 1.91 8.06 -52.49 -0.42 1.49 14 22 H 0.11 1.70 8.06 -52.48 -0.42 1.28 14 23 H 0.11 1.88 8.06 -52.49 -0.42 1.46 14 24 H 0.37 6.21 9.06 45.56 0.41 6.62 14 LS Contribution 237.35 15.07 3.58 3.58 Total: -1.00 -28.46 237.35 -6.92 -35.38 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -0.40 Total: 6.31 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -3.30 Total: -27.39 kcal Atomic # 7 Polarization: -17.33 SS G_CDS: 0.59 Total: -16.75 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.24 Total: -10.79 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.04 Total: -4.15 kcal Atomic # 14 Polarization: 16.64 SS G_CDS: -5.03 Total: 11.61 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -2.16 Total: 2.19 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.46 -6.92 -35.38 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306650795.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.199 kcal (2) G-P(sol) polarization free energy of solvation -28.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds