Wall clock time and date at job start Mon Mar 30 2020 05:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.46950 * 2 1 4 4 O 1.21269 * 120.00064 * 359.97438 * 3 2 1 5 5 C 1.47107 * 120.00143 * 180.02562 * 3 2 1 6 6 C 1.40172 * 120.06714 * 0.02562 * 5 3 2 7 7 C 1.38245 * 120.35455 * 179.97438 * 6 5 3 8 8 C 1.37807 * 120.49223 * 359.72057 * 7 6 5 9 9 C 1.40733 * 120.12004 * 0.56166 * 8 7 6 10 10 C 1.41374 * 120.17360 * 179.71752 * 9 8 7 11 11 H 1.08003 * 120.00116 * 154.62453 * 10 9 8 12 12 C 1.39941 * 119.99926 * 334.35263 * 10 9 8 13 13 N 1.30839 * 119.99751 * 342.77884 * 12 10 9 14 14 Si 1.86796 * 120.00085 * 162.78549 * 12 10 9 15 15 H 1.48499 * 109.47200 * 59.99591 * 14 12 10 16 16 H 1.48497 * 109.47270 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47320 * 299.99790 * 14 12 10 18 18 C 1.39490 * 120.07117 * 180.02562 * 5 3 2 19 19 Cl 1.73605 * 120.23780 * 359.97438 * 18 5 3 20 20 H 1.08999 * 109.47098 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47557 * 299.99782 * 1 2 3 22 22 H 1.09003 * 109.47347 * 60.00061 * 1 2 3 23 23 H 1.08998 * 109.46842 * 240.00052 * 2 1 3 24 24 H 1.08995 * 109.47013 * 119.99806 * 2 1 3 25 25 H 1.08006 * 119.82199 * 359.96447 * 6 5 3 26 26 H 1.08000 * 119.75483 * 180.02562 * 7 6 5 27 27 H 1.07999 * 119.93584 * 180.30030 * 8 7 6 28 28 H 0.96996 * 119.99380 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3425 -0.0005 5 6 3.4786 1.6897 -0.0006 6 6 4.3908 0.6254 -0.0017 7 6 5.7512 0.8713 -0.0027 8 6 6.2281 2.1642 -0.0085 9 6 5.3305 3.2480 -0.0015 10 6 5.8185 4.5749 -0.0014 11 1 5.2097 5.3743 -0.3974 12 6 7.0883 4.8533 0.5169 13 7 7.6826 3.9844 1.2938 14 14 7.9344 6.4655 0.0997 15 1 7.0985 7.5994 0.5697 16 1 9.2590 6.5170 0.7690 17 1 8.1181 6.5622 -1.3707 18 6 3.9451 3.0043 0.0000 19 17 2.8240 4.3298 0.0006 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 4.0288 -0.3922 -0.0015 26 1 6.4454 0.0439 -0.0040 27 1 7.2927 2.3459 -0.0142 28 1 8.5628 4.1773 1.6527 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306721735.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:27 Heat of formation + Delta-G solvation = -36.136017 kcal Electronic energy + Delta-G solvation = -14345.852968 eV Core-core repulsion = 11773.126438 eV Total energy + Delta-G solvation = -2572.726530 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.04016 -37.15531 -34.93863 -33.87070 -32.45644 -30.10676 -29.62756 -25.66441 -24.54172 -21.92285 -20.68645 -19.11185 -17.26753 -15.91584 -15.08596 -14.98528 -14.95119 -14.53267 -13.59291 -13.13173 -12.85405 -12.76239 -12.06007 -11.88430 -11.64994 -11.36287 -11.25588 -10.97831 -10.86446 -10.69363 -10.42361 -10.16441 -10.08602 -9.64241 -9.32737 -8.39212 -7.71652 -7.52464 -6.94126 -4.53985 1.77253 2.56556 3.00371 3.02768 3.06493 3.45440 3.66952 3.83752 4.44879 4.69177 5.32193 5.33731 5.43313 5.63907 5.96145 6.01850 6.18004 6.23408 6.28036 6.38401 6.73911 6.80912 7.03383 7.09445 7.30623 7.62886 7.73315 7.92729 8.32332 8.34558 8.59586 8.65484 10.00459 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.038362 B = 0.007906 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.714016 B = 3540.557373 C = 4181.984586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.167 4.167 3 C 0.388 3.612 4 O -0.450 6.450 5 C -0.141 4.141 6 C -0.189 4.189 7 C -0.114 4.114 8 C -0.131 4.131 9 C 0.102 3.898 10 C -0.447 4.447 11 H 0.089 0.911 12 C 0.076 3.924 13 N -0.789 5.789 14 Si 0.913 3.087 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.261 1.261 18 C -0.081 4.081 19 Cl -0.084 7.084 20 H 0.053 0.947 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.127 0.873 28 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.146 -5.102 -1.638 6.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.204 4.204 3 C 0.266 3.734 4 O -0.326 6.326 5 C -0.143 4.143 6 C -0.209 4.209 7 C -0.133 4.133 8 C -0.151 4.151 9 C 0.099 3.901 10 C -0.475 4.475 11 H 0.107 0.893 12 C -0.143 4.143 13 N -0.413 5.413 14 Si 0.737 3.263 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.186 1.186 18 C -0.110 4.110 19 Cl -0.055 7.055 20 H 0.072 0.928 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.123 0.877 26 H 0.118 0.882 27 H 0.145 0.855 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.451 -4.518 -1.481 5.874 hybrid contribution 0.582 0.624 -0.015 0.853 sum -2.869 -3.894 -1.496 5.063 Atomic orbital electron populations 1.21570 0.94503 1.00898 1.02809 1.21937 0.97288 0.97144 1.04067 1.22506 0.88775 0.90398 0.71720 1.90530 1.58612 1.47308 1.36161 1.19751 0.93659 0.92835 1.08048 1.20535 0.92798 0.95915 1.11662 1.20714 0.94485 0.96604 1.01493 1.21468 1.00096 0.90687 1.02825 1.17422 0.88219 0.94563 0.89884 1.19659 0.99802 0.93901 1.34185 0.89285 1.25946 0.96895 0.99037 0.92398 1.69786 1.14479 1.35759 1.21324 0.86271 0.78424 0.81569 0.80076 1.18705 1.20196 1.18576 1.21211 0.90234 0.86266 1.13249 1.98248 1.61890 1.48520 1.96844 0.92763 0.92377 0.92403 0.88991 0.88970 0.87698 0.88250 0.85493 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.20 37.16 0.34 -1.51 15 2 C -0.17 -2.42 5.02 -27.88 -0.14 -2.56 15 3 C 0.39 7.65 7.11 -30.71 -0.22 7.43 15 4 O -0.45 -9.91 13.59 5.57 0.08 -9.83 15 5 C -0.14 -3.12 5.87 -105.11 -0.62 -3.74 15 6 C -0.19 -3.80 9.47 -38.85 -0.37 -4.17 15 7 C -0.11 -2.42 10.00 -39.74 -0.40 -2.81 15 8 C -0.13 -3.16 8.68 -38.80 -0.34 -3.50 15 9 C 0.10 2.64 5.56 -106.85 -0.59 2.04 15 10 C -0.45 -11.51 8.52 -37.75 -0.32 -11.83 15 11 H 0.09 2.27 7.11 -52.48 -0.37 1.90 15 12 C 0.08 1.83 5.14 -17.34 -0.09 1.74 15 13 N -0.79 -19.31 10.99 55.55 0.61 -18.70 15 14 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 15 15 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 16 H -0.28 -5.32 7.11 56.52 0.40 -4.92 15 17 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 18 C -0.08 -2.02 6.42 -38.20 -0.25 -2.27 15 19 Cl -0.08 -2.01 24.65 -51.86 -1.28 -3.28 15 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 21 H 0.06 0.81 8.10 -51.93 -0.42 0.39 15 22 H 0.06 0.80 8.10 -51.93 -0.42 0.38 15 23 H 0.09 1.19 8.08 -51.93 -0.42 0.77 15 24 H 0.09 1.21 8.08 -51.93 -0.42 0.79 15 25 H 0.10 1.73 7.02 -52.48 -0.37 1.36 15 26 H 0.10 1.80 8.06 -52.49 -0.42 1.38 15 27 H 0.13 3.11 6.21 -52.49 -0.33 2.79 15 28 H 0.28 6.33 8.30 -40.82 -0.34 5.99 15 LS Contribution 258.32 15.07 3.89 3.89 Total: -1.00 -27.16 258.32 -7.44 -34.60 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -2.73 Total: 1.35 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -2.99 Total: -21.17 kcal Atomic # 7 Polarization: -19.31 SS G_CDS: 0.61 Total: -18.70 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -1.28 Total: -3.28 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.16 -7.44 -34.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306721735.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.536 kcal (2) G-P(sol) polarization free energy of solvation -27.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds