Wall clock time and date at job start Mon Mar 30 2020 05:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.46950 * 2 1 4 4 O 1.21269 * 120.00064 * 359.97438 * 3 2 1 5 5 C 1.47107 * 120.00143 * 180.02562 * 3 2 1 6 6 C 1.40172 * 120.06714 * 0.02562 * 5 3 2 7 7 C 1.38245 * 120.35455 * 179.97438 * 6 5 3 8 8 C 1.37807 * 120.49223 * 359.72057 * 7 6 5 9 9 C 1.40733 * 120.12004 * 0.56166 * 8 7 6 10 10 C 1.41374 * 120.17360 * 179.71752 * 9 8 7 11 11 H 1.08003 * 120.00116 * 154.62453 * 10 9 8 12 12 C 1.39941 * 119.99926 * 334.35263 * 10 9 8 13 13 N 1.30839 * 119.99751 * 342.77884 * 12 10 9 14 14 Si 1.86796 * 120.00085 * 162.78549 * 12 10 9 15 15 H 1.48499 * 109.47200 * 59.99591 * 14 12 10 16 16 H 1.48497 * 109.47270 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47320 * 299.99790 * 14 12 10 18 18 C 1.39490 * 120.07117 * 180.02562 * 5 3 2 19 19 Cl 1.73605 * 120.23780 * 359.97438 * 18 5 3 20 20 H 1.08999 * 109.47098 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47557 * 299.99782 * 1 2 3 22 22 H 1.09003 * 109.47347 * 60.00061 * 1 2 3 23 23 H 1.08998 * 109.46842 * 240.00052 * 2 1 3 24 24 H 1.08995 * 109.47013 * 119.99806 * 2 1 3 25 25 H 1.08006 * 119.82199 * 359.96447 * 6 5 3 26 26 H 1.08000 * 119.75483 * 180.02562 * 7 6 5 27 27 H 1.07999 * 119.93584 * 180.30030 * 8 7 6 28 28 H 0.96996 * 119.99380 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3425 -0.0005 5 6 3.4786 1.6897 -0.0006 6 6 4.3908 0.6254 -0.0017 7 6 5.7512 0.8713 -0.0027 8 6 6.2281 2.1642 -0.0085 9 6 5.3305 3.2480 -0.0015 10 6 5.8185 4.5749 -0.0014 11 1 5.2097 5.3743 -0.3974 12 6 7.0883 4.8533 0.5169 13 7 7.6826 3.9844 1.2938 14 14 7.9344 6.4655 0.0997 15 1 7.0985 7.5994 0.5697 16 1 9.2590 6.5170 0.7690 17 1 8.1181 6.5622 -1.3707 18 6 3.9451 3.0043 0.0000 19 17 2.8240 4.3298 0.0006 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 4.0288 -0.3922 -0.0015 26 1 6.4454 0.0439 -0.0040 27 1 7.2927 2.3459 -0.0142 28 1 8.5628 4.1773 1.6527 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306721735.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:27 Heat of formation + Delta-G solvation = -49.949975 kcal Electronic energy + Delta-G solvation = -14346.451986 eV Core-core repulsion = 11773.126438 eV Total energy + Delta-G solvation = -2573.325549 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.62766 -38.86326 -36.76580 -35.64212 -33.70066 -31.82058 -31.34653 -27.40710 -25.98606 -23.48396 -22.38885 -20.68638 -18.94565 -17.65031 -16.74447 -16.60102 -16.25327 -16.20213 -15.21395 -14.79389 -14.44883 -14.29431 -13.64720 -13.31073 -13.10334 -12.86993 -12.81332 -12.54863 -12.28069 -12.10540 -11.99446 -11.89287 -11.81754 -11.37713 -11.09917 -10.03487 -9.49898 -9.30960 -8.71897 -6.42032 0.09847 0.82539 1.36960 1.44227 1.48391 1.83239 1.85750 2.18627 2.68735 3.29195 3.54928 4.13627 4.35499 4.36360 4.56472 4.67347 4.82776 4.97864 5.03229 5.12285 5.13220 5.24361 5.34983 5.37627 5.60092 5.86803 5.94056 6.16218 6.50009 6.75893 6.80343 6.83636 8.24996 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.038362 B = 0.007906 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.714016 B = 3540.557373 C = 4181.984586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.157 4.157 3 C 0.383 3.617 4 O -0.481 6.481 5 C -0.157 4.157 6 C -0.166 4.166 7 C -0.114 4.114 8 C -0.150 4.150 9 C 0.074 3.926 10 C -0.486 4.486 11 H 0.076 0.924 12 C 0.042 3.958 13 N -0.816 5.816 14 Si 0.977 3.023 15 H -0.266 1.266 16 H -0.262 1.262 17 H -0.259 1.259 18 C -0.116 4.116 19 Cl -0.092 7.092 20 H 0.088 0.912 21 H 0.044 0.956 22 H 0.045 0.955 23 H 0.119 0.881 24 H 0.116 0.884 25 H 0.155 0.845 26 H 0.136 0.864 27 H 0.116 0.884 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.197 -7.400 -1.758 8.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.194 4.194 3 C 0.263 3.737 4 O -0.359 6.359 5 C -0.159 4.159 6 C -0.185 4.185 7 C -0.132 4.132 8 C -0.170 4.170 9 C 0.071 3.929 10 C -0.515 4.515 11 H 0.094 0.906 12 C -0.174 4.174 13 N -0.442 5.442 14 Si 0.798 3.202 15 H -0.191 1.191 16 H -0.186 1.186 17 H -0.183 1.183 18 C -0.144 4.144 19 Cl -0.064 7.064 20 H 0.107 0.893 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.137 0.863 24 H 0.134 0.866 25 H 0.173 0.827 26 H 0.154 0.846 27 H 0.133 0.867 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.504 -6.840 -1.600 7.850 hybrid contribution 0.525 1.188 0.022 1.299 sum -2.980 -5.652 -1.579 6.581 Atomic orbital electron populations 1.21577 0.93624 1.02749 1.01631 1.21974 0.98007 0.93116 1.06299 1.23136 0.87406 0.92758 0.70436 1.90520 1.58869 1.49032 1.37460 1.20330 0.96005 0.92293 1.07284 1.21089 0.91940 0.97613 1.07849 1.21137 0.95899 0.96314 0.99853 1.21531 0.99482 0.91924 1.04080 1.17753 0.89183 0.95250 0.90735 1.19766 1.01226 0.94024 1.36446 0.90617 1.26641 0.96839 1.02217 0.91752 1.69806 1.15086 1.37379 1.21886 0.85318 0.77740 0.77316 0.79847 1.19074 1.18560 1.18336 1.21549 0.90157 0.87504 1.15231 1.98224 1.61910 1.49207 1.97033 0.89297 0.93717 0.93583 0.86332 0.86556 0.82729 0.84639 0.86655 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.20 71.98 0.66 -2.53 15 2 C -0.16 -3.88 5.02 29.85 0.15 -3.73 15 3 C 0.38 14.38 7.11 28.01 0.20 14.58 15 4 O -0.48 -21.04 13.59 -2.99 -0.04 -21.08 15 5 C -0.16 -6.74 5.87 -20.18 -0.12 -6.86 15 6 C -0.17 -6.06 9.47 22.74 0.22 -5.85 15 7 C -0.11 -4.52 10.00 22.17 0.22 -4.30 15 8 C -0.15 -7.28 8.68 22.78 0.20 -7.08 15 9 C 0.07 3.91 5.56 -21.31 -0.12 3.79 15 10 C -0.49 -26.05 8.52 23.45 0.20 -25.85 15 11 H 0.08 4.09 7.11 -2.91 -0.02 4.07 15 12 C 0.04 2.05 5.14 85.25 0.44 2.49 15 13 N -0.82 -40.68 10.99 21.83 0.24 -40.44 15 14 Si 0.98 37.90 29.59 68.60 2.03 39.93 15 15 H -0.27 -10.36 7.11 99.48 0.71 -9.65 15 16 H -0.26 -9.38 7.11 99.48 0.71 -8.68 15 17 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 18 C -0.12 -5.87 6.42 23.16 0.15 -5.73 15 19 Cl -0.09 -4.57 24.65 -2.72 -0.07 -4.64 15 20 H 0.09 1.45 8.14 -2.39 -0.02 1.43 15 21 H 0.04 1.14 8.10 -2.39 -0.02 1.12 15 22 H 0.04 1.16 8.10 -2.39 -0.02 1.14 15 23 H 0.12 2.38 8.08 -2.39 -0.02 2.36 15 24 H 0.12 2.40 8.08 -2.39 -0.02 2.38 15 25 H 0.16 4.10 7.02 -2.91 -0.02 4.08 15 26 H 0.14 4.36 8.06 -2.91 -0.02 4.34 15 27 H 0.12 5.76 6.21 -2.91 -0.02 5.74 15 28 H 0.29 13.11 8.30 -92.71 -0.77 12.34 15 Total: -1.00 -61.30 258.32 5.53 -55.76 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.17 Total: 11.54 kcal Atomic # 6 Polarization: -43.27 SS G_CDS: 2.20 Total: -41.08 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.24 Total: -40.44 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.04 Total: -21.08 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Atomic # 17 Polarization: -4.57 SS G_CDS: -0.07 Total: -4.64 kcal Total: -61.30 5.53 -55.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306721735.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.815 kcal (2) G-P(sol) polarization free energy of solvation -61.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds