Wall clock time and date at job start Mon Mar 30 2020 05:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30934 * 1 3 3 Si 1.86803 * 120.00020 * 2 1 4 4 H 1.48502 * 109.47017 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46949 * 119.99702 * 3 2 1 6 6 H 1.48497 * 109.47449 * 240.00117 * 3 2 1 7 7 C 1.39917 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00041 * 154.26480 * 7 2 1 9 9 C 1.40389 * 120.00017 * 334.26637 * 7 2 1 10 10 C 1.47921 * 120.39729 * 321.85260 * 9 7 2 11 11 C 1.40123 * 129.12079 * 0.02562 * 10 9 7 12 12 C 1.32621 * 115.79206 * 180.02562 * 11 10 9 13 13 S 1.75501 * 110.63945 * 359.97438 * 12 11 10 14 14 C 1.39432 * 118.14898 * 179.97438 * 10 9 7 15 15 C 1.40148 * 120.16563 * 359.97438 * 14 10 9 16 16 F 1.35104 * 119.24827 * 179.97438 * 15 14 10 17 17 C 1.38059 * 121.50283 * 359.97438 * 15 14 10 18 18 C 1.38268 * 120.97577 * 359.79767 * 17 15 14 19 19 O 1.35716 * 120.00391 * 180.26910 * 18 17 15 20 20 H 0.96997 * 120.00057 * 172.91187 * 1 2 3 21 21 H 1.07999 * 122.10485 * 359.97438 * 11 10 9 22 22 H 1.08001 * 124.67554 * 180.02562 * 12 11 10 23 23 H 1.08005 * 119.51632 * 180.02562 * 17 15 14 24 24 H 0.96705 * 113.99627 * 265.42443 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2434 1.6178 0.0000 4 1 1.2783 2.7465 0.0006 5 1 3.0971 1.6964 1.2126 6 1 3.0971 1.6965 -1.2125 7 6 2.0090 -1.2117 0.0005 8 1 3.0087 -1.2582 -0.4056 9 6 1.4115 -2.3670 0.5289 10 6 0.5634 -2.2849 1.7381 11 6 0.2269 -1.1631 2.5075 12 6 -0.5605 -1.3933 3.5495 13 16 -0.9615 -3.0984 3.6573 14 6 -0.0073 -3.4613 2.2224 15 6 0.2266 -4.6786 1.5686 16 9 -0.3352 -5.8073 2.0542 17 6 1.0179 -4.7507 0.4396 18 6 1.6069 -3.6175 -0.0902 19 8 2.3768 -3.7103 -1.2040 20 1 -0.4850 -0.8336 -0.1037 21 1 0.5867 -0.1736 2.2674 22 1 -0.9077 -0.6356 4.2365 23 1 1.1764 -5.7059 -0.0390 24 1 3.3221 -3.8022 -1.0221 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306727291.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:09 Heat of formation + Delta-G solvation = -58.994598 kcal Electronic energy + Delta-G solvation = -14450.549836 eV Core-core repulsion = 11755.415485 eV Total energy + Delta-G solvation = -2695.134352 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.70733 -38.63607 -36.39350 -34.12664 -33.07914 -29.28883 -28.01090 -24.99793 -22.78225 -21.48719 -19.73833 -18.56190 -17.21967 -16.49937 -15.72156 -15.09977 -14.59786 -14.28465 -14.19737 -13.67841 -13.62265 -12.85040 -12.57707 -12.20224 -11.79951 -11.43119 -11.12895 -10.97175 -10.58975 -10.38034 -9.95985 -9.73846 -9.66729 -9.04741 -8.38225 -7.67297 -7.55880 -6.82283 -4.69930 1.58525 2.20551 2.40459 2.84470 2.99652 3.03473 3.19345 3.26468 3.77437 4.17253 4.79483 5.17408 5.57172 5.68398 5.92579 6.23621 6.44307 6.57764 6.80270 6.82625 7.10568 7.29339 7.32839 7.47384 7.63449 7.75397 8.13529 8.35288 8.78575 9.67749 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.024895 B = 0.011985 C = 0.008459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.464489 B = 2335.653583 C = 3309.478912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.034 3.966 3 Si 1.061 2.939 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.474 4.474 8 H 0.090 0.910 9 C 0.105 3.895 10 C -0.145 4.145 11 C -0.057 4.057 12 C -0.257 4.257 13 S 0.032 5.968 14 C -0.106 4.106 15 C -0.024 4.024 16 F -0.164 7.164 17 C -0.093 4.093 18 C -0.018 4.018 19 O -0.482 6.482 20 H 0.302 0.698 21 H 0.139 0.861 22 H 0.152 0.848 23 H 0.116 0.884 24 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.467 0.194 2.612 3.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.191 4.191 3 Si 0.883 3.117 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.500 4.500 8 H 0.108 0.892 9 C 0.099 3.901 10 C -0.152 4.152 11 C -0.086 4.086 12 C -0.390 4.390 13 S 0.293 5.707 14 C -0.222 4.222 15 C -0.050 4.050 16 F -0.143 7.143 17 C -0.115 4.115 18 C -0.066 4.066 19 O -0.289 6.289 20 H 0.116 0.884 21 H 0.156 0.844 22 H 0.170 0.830 23 H 0.134 0.866 24 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.714 1.098 3.455 3.695 hybrid contribution 1.289 -1.186 -0.706 1.888 sum 2.003 -0.088 2.750 3.403 Atomic orbital electron populations 1.70463 1.08015 1.34788 1.24667 1.27212 0.95580 1.04495 0.91814 0.83685 0.75936 0.73535 0.78549 1.19337 1.19500 1.19584 1.20399 1.03132 0.93788 1.32699 0.89205 1.18793 0.89761 0.93102 0.88489 1.18828 1.07398 0.90706 0.98295 1.19936 0.96372 0.99339 0.92935 1.24761 1.10363 0.97795 1.06089 1.83606 1.54838 1.03991 1.28221 1.22378 1.03760 0.96461 0.99649 1.15906 1.09220 0.79888 0.99981 1.91319 1.84832 1.50008 1.88148 1.20548 0.98790 0.98274 0.93900 1.17826 1.05236 0.91618 0.91945 1.84835 1.19942 1.95477 1.28622 0.88436 0.84351 0.83045 0.86560 0.79045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.56 11.63 55.55 0.65 -17.91 14 2 C 0.03 0.78 3.59 -17.31 -0.06 0.72 14 3 Si 1.06 19.30 30.00 -169.99 -5.10 14.20 14 4 H -0.27 -4.91 7.11 56.52 0.40 -4.50 14 5 H -0.27 -4.70 7.11 56.52 0.40 -4.30 14 6 H -0.27 -4.70 7.11 56.52 0.40 -4.30 14 7 C -0.47 -11.36 8.39 -38.14 -0.32 -11.68 14 8 H 0.09 2.05 7.94 -52.48 -0.42 1.64 14 9 C 0.10 2.59 5.11 -104.12 -0.53 2.06 14 10 C -0.14 -3.53 5.11 -104.78 -0.54 -4.07 14 11 C -0.06 -1.29 8.31 -40.77 -0.34 -1.62 14 12 C -0.26 -5.22 11.11 28.83 0.32 -4.90 14 13 S 0.03 0.67 23.30 -107.50 -2.50 -1.83 14 14 C -0.11 -2.54 6.46 -38.42 -0.25 -2.79 14 15 C -0.02 -0.57 7.30 -38.93 -0.28 -0.86 14 16 F -0.16 -3.72 17.24 2.25 0.04 -3.69 14 17 C -0.09 -2.11 9.85 -39.64 -0.39 -2.50 14 18 C -0.02 -0.43 6.71 -38.56 -0.26 -0.69 14 19 O -0.48 -10.27 12.92 -18.85 -0.24 -10.52 14 20 H 0.30 7.89 7.28 -40.82 -0.30 7.59 14 21 H 0.14 3.14 6.07 -52.49 -0.32 2.82 14 22 H 0.15 2.59 8.06 -52.49 -0.42 2.17 14 23 H 0.12 2.34 8.06 -52.48 -0.42 1.92 14 24 H 0.36 5.89 9.06 45.56 0.41 6.30 14 LS Contribution 234.82 15.07 3.54 3.54 Total: -1.00 -26.68 234.82 -6.54 -33.21 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -0.26 Total: 9.33 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: -2.65 Total: -26.32 kcal Atomic # 7 Polarization: -18.56 SS G_CDS: 0.65 Total: -17.91 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.24 Total: -10.52 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.04 Total: -3.69 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.10 Total: 14.20 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.50 Total: -1.83 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -26.68 -6.54 -33.21 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306727291.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.784 kcal (2) G-P(sol) polarization free energy of solvation -26.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds