Wall clock time and date at job start Mon Mar 30 2020 05:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30942 * 1 3 3 Si 1.86795 * 120.00234 * 2 1 4 4 H 1.48500 * 109.47269 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46983 * 119.99594 * 3 2 1 6 6 H 1.48501 * 109.47413 * 239.99632 * 3 2 1 7 7 C 1.39841 * 119.99733 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99486 * 152.13890 * 7 2 1 9 9 C 1.40849 * 120.00141 * 332.13987 * 7 2 1 10 10 C 1.42187 * 120.12646 * 146.00031 * 9 7 2 11 11 S 1.75893 * 130.46546 * 359.97438 * 10 9 7 12 12 C 1.75283 * 92.22941 * 180.02562 * 11 10 9 13 13 C 1.32203 * 111.31492 * 359.97438 * 12 11 10 14 14 O 1.36153 * 122.60824 * 179.97438 * 13 12 11 15 15 C 1.39363 * 119.69810 * 179.97438 * 10 9 7 16 16 C 1.41419 * 119.05499 * 0.02562 * 15 10 9 17 17 C 1.37617 * 120.97225 * 359.97438 * 16 15 10 18 18 C 1.38241 * 120.72403 * 359.75721 * 17 16 15 19 19 F 1.35090 * 120.09979 * 180.25775 * 18 17 16 20 20 H 0.97002 * 119.99996 * 176.57028 * 1 2 3 21 21 H 1.08004 * 124.34035 * 180.02562 * 12 11 10 22 22 H 0.96697 * 113.99993 * 270.01664 * 14 13 12 23 23 H 1.07995 * 119.51049 * 179.97438 * 16 15 10 24 24 H 1.07993 * 119.64215 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2435 1.6177 0.0000 4 1 1.2785 2.7464 -0.0006 5 1 3.0971 1.6963 1.2125 6 1 3.0973 1.6963 -1.2124 7 6 2.0086 -1.2111 0.0005 8 1 2.9947 -1.2655 -0.4366 9 6 1.4267 -2.3599 0.5711 10 6 1.6854 -3.6424 0.0142 11 16 2.6730 -4.1104 -1.3640 12 6 2.2905 -5.8074 -1.1487 13 6 1.4837 -5.9912 -0.1178 14 8 1.0400 -7.2229 0.2563 15 6 1.1055 -4.7732 0.5862 16 6 0.2669 -4.6189 1.7145 17 6 0.0204 -3.3749 2.2488 18 6 0.5920 -2.2434 1.6973 19 9 0.3455 -1.0290 2.2352 20 1 -0.4850 -0.8386 -0.0503 21 1 2.6666 -6.6012 -1.7773 22 1 0.2122 -7.4881 -0.1673 23 1 -0.1866 -5.4902 2.1634 24 1 -0.6231 -3.2819 3.1111 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306740810.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:44 Heat of formation + Delta-G solvation = -77.418172 kcal Electronic energy + Delta-G solvation = -14328.215891 eV Core-core repulsion = 11632.282633 eV Total energy + Delta-G solvation = -2695.933258 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.26230 -40.31615 -38.35639 -35.96191 -34.13855 -31.81029 -29.51495 -27.11044 -24.17180 -23.34740 -21.85826 -20.23258 -18.54245 -18.25724 -17.43597 -17.08436 -16.34064 -16.09598 -15.75458 -15.62684 -14.82098 -14.38424 -13.99450 -13.75481 -13.65804 -13.46564 -12.84051 -12.54297 -12.08083 -11.95049 -11.68322 -11.57981 -11.25295 -10.85854 -10.19379 -9.40298 -9.23290 -8.61415 -6.59523 -0.10246 0.52452 0.76254 1.18998 1.29613 1.46723 1.61152 1.75842 2.26610 2.54692 3.09670 3.34122 3.84722 3.90194 4.23529 4.40672 4.67250 4.78554 5.05363 5.23660 5.27098 5.43119 5.59354 5.62891 5.79763 6.05161 6.49008 6.66247 6.79105 7.90415 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.033227 B = 0.009828 C = 0.007894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.486438 B = 2848.225264 C = 3546.311896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.008 3.992 3 Si 1.111 2.889 4 H -0.269 1.269 5 H -0.266 1.266 6 H -0.250 1.250 7 C -0.539 4.539 8 H 0.083 0.917 9 C 0.075 3.925 10 C -0.217 4.217 11 S 0.103 5.897 12 C -0.230 4.230 13 C 0.093 3.907 14 O -0.484 6.484 15 C -0.084 4.084 16 C -0.182 4.182 17 C -0.102 4.102 18 C -0.059 4.059 19 F -0.157 7.157 20 H 0.278 0.722 21 H 0.199 0.801 22 H 0.405 0.595 23 H 0.138 0.862 24 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 -6.844 -2.329 7.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.211 4.211 3 Si 0.928 3.072 4 H -0.193 1.193 5 H -0.191 1.191 6 H -0.174 1.174 7 C -0.566 4.566 8 H 0.101 0.899 9 C 0.069 3.931 10 C -0.333 4.333 11 S 0.365 5.635 12 C -0.364 4.364 13 C 0.035 3.965 14 O -0.296 6.296 15 C -0.092 4.092 16 C -0.203 4.203 17 C -0.122 4.122 18 C -0.083 4.083 19 F -0.136 7.136 20 H 0.089 0.911 21 H 0.216 0.784 22 H 0.263 0.737 23 H 0.155 0.845 24 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.933 -4.460 -3.028 6.137 hybrid contribution -1.420 -2.223 0.984 2.815 sum 1.513 -6.683 -2.044 7.150 Atomic orbital electron populations 1.70592 1.08952 1.32695 1.28481 1.28369 0.95466 1.07391 0.89887 0.83082 0.75005 0.69894 0.79257 1.19344 1.19131 1.17428 1.20519 1.04792 0.95038 1.36204 0.89857 1.17207 0.92736 0.91924 0.91219 1.22580 1.10352 0.96470 1.03855 1.83540 1.52034 0.97612 1.30353 1.25449 1.06786 1.01225 1.02989 1.17988 0.99972 0.84089 0.94485 1.84811 1.45703 1.28425 1.70639 1.19579 0.99797 0.91745 0.98057 1.20288 1.04977 0.96311 0.98739 1.20697 0.99749 0.91450 1.00326 1.17820 1.11473 0.80306 0.98710 1.91314 1.93533 1.43418 1.85376 0.91115 0.78410 0.73704 0.84450 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -43.20 12.04 21.81 0.26 -42.93 14 2 C 0.01 0.41 4.21 85.21 0.36 0.77 14 3 Si 1.11 43.95 30.01 68.60 2.06 46.01 14 4 H -0.27 -10.44 7.11 99.48 0.71 -9.73 14 5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 14 6 H -0.25 -8.84 7.11 99.48 0.71 -8.14 14 7 C -0.54 -28.78 8.61 23.30 0.20 -28.58 14 8 H 0.08 4.32 7.98 -2.91 -0.02 4.30 14 9 C 0.08 4.03 5.09 -21.07 -0.11 3.92 14 10 C -0.22 -10.39 6.36 23.52 0.15 -10.24 14 11 S 0.10 4.01 22.94 -56.49 -1.30 2.71 14 12 C -0.23 -7.48 10.99 66.80 0.73 -6.75 14 13 C 0.09 3.29 6.91 23.17 0.16 3.45 14 14 O -0.48 -13.94 13.61 -95.30 -1.30 -15.24 14 15 C -0.08 -3.62 6.04 -20.30 -0.12 -3.74 14 16 C -0.18 -7.58 10.07 22.91 0.23 -7.35 14 17 C -0.10 -4.59 9.95 22.12 0.22 -4.37 14 18 C -0.06 -3.11 6.19 22.86 0.14 -2.97 14 19 F -0.16 -8.65 14.29 44.97 0.64 -8.01 14 20 H 0.28 15.93 7.12 -92.71 -0.66 15.27 14 21 H 0.20 4.79 8.06 -2.91 -0.02 4.77 14 22 H 0.41 7.40 9.07 -74.06 -0.67 6.73 14 23 H 0.14 4.80 8.06 -2.91 -0.02 4.78 14 24 H 0.13 5.20 8.06 -2.91 -0.02 5.17 14 Total: -1.00 -62.71 236.98 3.03 -59.68 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.70 Total: 13.65 kcal Atomic # 6 Polarization: -57.82 SS G_CDS: 1.97 Total: -55.86 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.26 Total: -42.93 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -1.30 Total: -15.24 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 0.64 Total: -8.01 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.06 Total: 46.01 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.30 Total: 2.71 kcal Total: -62.71 3.03 -59.68 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306740810.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.740 kcal (2) G-P(sol) polarization free energy of solvation -62.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds