Wall clock time and date at job start Mon Mar 30 2020 05:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30964 * 1 3 3 Si 1.86800 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47155 * 239.99974 * 3 2 1 5 5 H 1.48496 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46957 * 120.00062 * 3 2 1 7 7 C 1.39777 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00086 * 162.57577 * 7 2 1 9 9 C 1.41149 * 120.00261 * 342.57174 * 7 2 1 10 10 C 1.41095 * 120.06306 * 334.51643 * 9 7 2 11 11 C 1.36028 * 120.08076 * 180.02562 * 10 9 7 12 12 O 1.35945 * 119.59275 * 179.97438 * 11 10 9 13 13 C 1.41049 * 120.81198 * 0.02562 * 11 10 9 14 14 S 1.76012 * 130.23059 * 179.97438 * 13 11 10 15 15 C 1.75267 * 92.23853 * 180.02562 * 14 13 11 16 16 C 1.31747 * 111.45676 * 0.02562 * 15 14 13 17 17 C 1.39849 * 120.17306 * 359.97438 * 13 11 10 18 18 C 1.40261 * 120.06341 * 154.23124 * 9 7 2 19 19 F 1.35106 * 119.99293 * 0.02562 * 18 9 7 20 20 H 0.97001 * 119.99749 * 0.02562 * 1 2 3 21 21 H 1.08005 * 119.95872 * 0.02562 * 10 9 7 22 22 H 0.96700 * 113.99777 * 89.99339 * 12 11 10 23 23 H 1.08000 * 124.27515 * 179.97438 * 15 14 13 24 24 H 1.07993 * 122.56426 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2437 1.6177 0.0000 4 1 3.0974 1.6964 -1.2125 5 1 1.2787 2.7464 0.0006 6 1 3.0974 1.6963 1.2125 7 6 2.0085 -1.2105 -0.0005 8 1 3.0513 -1.2319 -0.2806 9 6 1.3513 -2.4050 0.3650 10 6 0.2258 -2.3610 1.2148 11 6 -0.4075 -3.5120 1.5677 12 8 -1.4907 -3.4580 2.3874 13 6 0.0466 -4.7608 1.0946 14 16 -0.5735 -6.3816 1.3886 15 6 0.6633 -7.1113 0.3837 16 6 1.4698 -6.2020 -0.1246 17 6 1.1600 -4.8303 0.2512 18 6 1.8123 -3.6375 -0.1205 19 9 2.8866 -3.6821 -0.9385 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1334 -1.4122 1.5854 22 1 -2.3328 -3.3672 1.9208 23 1 0.7534 -8.1725 0.2045 24 1 2.2965 -6.4548 -0.7719 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306742491.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:18 Heat of formation + Delta-G solvation = -76.634657 kcal Electronic energy + Delta-G solvation = -14216.917925 eV Core-core repulsion = 11521.018643 eV Total energy + Delta-G solvation = -2695.899282 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.19897 -40.26931 -37.89079 -36.76175 -34.34399 -30.97164 -29.57437 -27.49685 -24.36524 -23.00072 -21.68346 -19.71783 -18.72815 -18.39830 -17.74719 -16.79539 -16.46950 -16.00914 -15.61186 -15.32107 -14.98255 -14.52606 -14.05740 -13.81282 -13.47874 -13.16429 -12.76986 -12.56811 -12.36080 -12.08694 -11.81651 -11.64302 -11.28502 -11.03229 -10.00032 -9.36457 -8.89635 -8.41093 -6.50300 0.00690 0.46516 0.86357 1.25504 1.35303 1.39709 1.49615 1.58650 2.14879 2.42821 3.23848 3.46727 3.82529 4.02574 4.45839 4.49002 4.73208 4.93902 5.07143 5.10622 5.29366 5.43104 5.57887 5.77733 5.88439 6.26258 6.59774 6.63810 6.92606 8.12982 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.036059 B = 0.008696 C = 0.007150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.308435 B = 3219.266842 C = 3915.090412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.040 3.960 3 Si 0.990 3.010 4 H -0.260 1.260 5 H -0.259 1.259 6 H -0.258 1.258 7 C -0.478 4.478 8 H 0.080 0.920 9 C 0.077 3.923 10 C -0.151 4.151 11 C 0.137 3.863 12 O -0.504 6.504 13 C -0.260 4.260 14 S 0.081 5.919 15 C -0.175 4.175 16 C -0.143 4.143 17 C -0.066 4.066 18 C -0.063 4.063 19 F -0.162 7.162 20 H 0.298 0.702 21 H 0.131 0.869 22 H 0.398 0.602 23 H 0.203 0.797 24 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 -5.070 0.830 5.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.178 4.178 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.182 1.182 6 H -0.183 1.183 7 C -0.506 4.506 8 H 0.098 0.902 9 C 0.072 3.928 10 C -0.173 4.173 11 C 0.088 3.912 12 O -0.315 6.315 13 C -0.375 4.375 14 S 0.341 5.659 15 C -0.308 4.308 16 C -0.174 4.174 17 C -0.074 4.074 18 C -0.086 4.086 19 F -0.141 7.141 20 H 0.109 0.891 21 H 0.149 0.851 22 H 0.255 0.745 23 H 0.220 0.780 24 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.904 -5.616 2.052 6.647 hybrid contribution 1.335 1.422 -1.449 2.430 sum -1.569 -4.194 0.602 4.519 Atomic orbital electron populations 1.69836 1.08882 1.31749 1.32619 1.26810 0.95678 1.04639 0.90686 0.85124 0.78866 0.74841 0.80261 1.18403 1.18234 1.18260 1.19686 0.98472 0.91960 1.40519 0.90194 1.17568 0.92507 0.91730 0.90975 1.21016 0.99341 0.97153 0.99767 1.17355 0.90719 0.89868 0.93209 1.84694 1.16323 1.95867 1.34626 1.22526 1.05439 0.97862 1.11652 1.83277 1.34294 0.94645 1.53696 1.25314 0.98962 1.04291 1.02227 1.20993 1.02843 0.89496 1.04074 1.19174 0.96061 0.93224 0.98956 1.17820 0.93454 0.93424 1.03928 1.91216 1.54121 1.97267 1.71546 0.89061 0.85108 0.74462 0.77974 0.83179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.38 10.98 21.80 0.24 -39.14 14 2 C 0.04 1.91 5.13 85.19 0.44 2.35 14 3 Si 0.99 36.41 29.59 68.60 2.03 38.44 14 4 H -0.26 -9.41 7.11 99.48 0.71 -8.70 14 5 H -0.26 -8.73 7.11 99.48 0.71 -8.03 14 6 H -0.26 -9.37 7.11 99.48 0.71 -8.67 14 7 C -0.48 -25.64 8.73 23.36 0.20 -25.43 14 8 H 0.08 4.26 7.72 -2.91 -0.02 4.23 14 9 C 0.08 4.19 5.55 -21.37 -0.12 4.08 14 10 C -0.15 -7.80 8.50 22.46 0.19 -7.61 14 11 C 0.14 6.38 6.67 22.45 0.15 6.53 14 12 O -0.50 -19.99 13.45 -92.93 -1.25 -21.24 14 13 C -0.26 -11.66 6.46 23.35 0.15 -11.51 14 14 S 0.08 2.78 23.20 -56.49 -1.31 1.47 14 15 C -0.17 -5.37 11.01 67.09 0.74 -4.63 14 16 C -0.14 -5.35 10.34 23.43 0.24 -5.11 14 17 C -0.07 -3.12 6.03 -20.34 -0.12 -3.24 14 18 C -0.06 -3.32 7.38 23.42 0.17 -3.15 14 19 F -0.16 -8.45 16.63 44.97 0.75 -7.70 14 20 H 0.30 12.93 8.30 -92.71 -0.77 12.16 14 21 H 0.13 6.84 6.19 -2.91 -0.02 6.82 14 22 H 0.40 12.00 9.06 -74.06 -0.67 11.33 14 23 H 0.20 4.24 8.06 -2.91 -0.02 4.21 14 24 H 0.15 5.00 8.06 -2.91 -0.02 4.97 14 Total: -1.00 -60.65 238.37 3.09 -57.56 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.59 Total: 18.33 kcal Atomic # 6 Polarization: -49.76 SS G_CDS: 2.04 Total: -47.72 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.24 Total: -39.14 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -1.25 Total: -21.24 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 0.75 Total: -7.70 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.31 Total: 1.47 kcal Total: -60.65 3.09 -57.56 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306742491.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.079 kcal (2) G-P(sol) polarization free energy of solvation -60.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds