Wall clock time and date at job start Mon Mar 30 2020 05:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30800 * 1 3 3 Si 1.86796 * 119.99807 * 2 1 4 4 H 1.48501 * 109.47185 * 269.99649 * 3 2 1 5 5 H 1.48500 * 109.47792 * 29.99403 * 3 2 1 6 6 H 1.48506 * 109.47388 * 149.99750 * 3 2 1 7 7 C 1.40131 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99583 * 180.02562 * 7 2 1 9 9 C 1.39938 * 119.99627 * 0.02562 * 7 2 1 10 10 C 1.36974 * 124.83787 * 180.02562 * 9 7 2 11 11 C 1.39756 * 115.01864 * 180.02562 * 10 9 7 12 12 C 1.40191 * 112.92834 * 359.97438 * 11 10 9 13 13 S 1.75451 * 124.84937 * 0.02562 * 9 7 2 14 14 C 1.39946 * 119.85687 * 179.97438 * 12 11 10 15 15 O 1.36019 * 119.79876 * 180.02562 * 14 12 11 16 16 C 1.38124 * 120.40658 * 0.02562 * 14 12 11 17 17 C 1.38898 * 120.20368 * 359.97438 * 16 14 12 18 18 C 1.37141 * 120.51103 * 0.23787 * 17 16 14 19 19 F 1.35105 * 119.79556 * 179.74043 * 18 17 16 20 20 H 0.96999 * 119.99828 * 0.02562 * 1 2 3 21 21 H 1.07998 * 122.49206 * 359.97062 * 10 9 7 22 22 H 0.96704 * 113.99916 * 270.02210 * 15 14 12 23 23 H 1.07992 * 119.89871 * 179.97438 * 16 14 12 24 24 H 1.08002 * 119.73867 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4895 2.0464 -1.4001 5 1 1.4394 2.6528 0.6999 6 1 3.5395 1.4403 0.7001 7 6 2.0087 -1.2136 0.0005 8 1 3.0887 -1.2135 0.0010 9 6 1.3089 -2.4254 0.0005 10 6 1.8912 -3.6652 0.0015 11 6 0.9962 -4.7386 0.0008 12 6 -0.3452 -4.3312 -0.0003 13 16 -0.4393 -2.5736 -0.0007 14 6 -1.3645 -5.2901 -0.0018 15 8 -2.6656 -4.8935 -0.0034 16 6 -1.0575 -6.6367 -0.0016 17 6 0.2682 -7.0512 -0.0005 18 6 1.2853 -6.1313 0.0053 19 9 2.5696 -6.5505 0.0116 20 1 -0.4850 0.8401 -0.0004 21 1 2.9624 -3.8031 0.0020 22 1 -3.0429 -4.7786 0.8796 23 1 -1.8506 -7.3697 -0.0022 24 1 0.4997 -8.1061 0.0001 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306743406.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:05 Heat of formation + Delta-G solvation = -93.910479 kcal Electronic energy + Delta-G solvation = -13966.588639 eV Core-core repulsion = 11269.940221 eV Total energy + Delta-G solvation = -2696.648418 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.58533 -40.25327 -37.95968 -36.52134 -34.80896 -31.02418 -29.87234 -27.36352 -24.48952 -23.14171 -21.37783 -20.09608 -18.77782 -18.44662 -17.55517 -16.86357 -16.49570 -16.17566 -15.85770 -15.31916 -14.86389 -14.48082 -13.96277 -13.79210 -13.41682 -13.19643 -13.01445 -12.81782 -12.21986 -11.99899 -11.95252 -11.51576 -11.15245 -11.02541 -10.00479 -9.38159 -9.01304 -8.26668 -6.67602 0.05468 0.38507 1.22732 1.29310 1.34932 1.53197 1.75396 1.78553 2.10351 2.64389 3.00838 3.40717 3.63608 4.08284 4.27174 4.67445 4.82138 4.85622 5.04870 5.30813 5.35165 5.43048 5.54419 5.70435 5.94585 6.06840 6.30147 6.44047 6.90749 7.86510 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.035461 B = 0.008412 C = 0.006820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.399492 B = 3327.650890 C = 4104.660542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.017 3.983 3 Si 1.017 2.983 4 H -0.256 1.256 5 H -0.255 1.255 6 H -0.254 1.254 7 C -0.401 4.401 8 H 0.104 0.896 9 C 0.023 3.977 10 C -0.395 4.395 11 C -0.019 4.019 12 C -0.302 4.302 13 S 0.163 5.837 14 C 0.156 3.844 15 O -0.503 6.503 16 C -0.186 4.186 17 C -0.109 4.109 18 C 0.012 3.988 19 F -0.159 7.159 20 H 0.317 0.683 21 H 0.098 0.902 22 H 0.404 0.596 23 H 0.162 0.838 24 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.953 -1.303 1.731 3.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.203 4.203 3 Si 0.834 3.166 4 H -0.180 1.180 5 H -0.178 1.178 6 H -0.177 1.177 7 C -0.435 4.435 8 H 0.122 0.878 9 C -0.097 4.097 10 C -0.420 4.420 11 C -0.028 4.028 12 C -0.418 4.418 13 S 0.423 5.577 14 C 0.108 3.892 15 O -0.315 6.315 16 C -0.207 4.207 17 C -0.130 4.130 18 C -0.009 4.009 19 F -0.138 7.138 20 H 0.131 0.869 21 H 0.116 0.884 22 H 0.262 0.738 23 H 0.180 0.820 24 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.217 -0.167 1.135 4.370 hybrid contribution 1.898 -0.540 0.449 2.024 sum -2.318 -0.707 1.584 2.895 Atomic orbital electron populations 1.68610 1.09119 1.33146 1.30818 1.27358 0.95946 1.06038 0.90923 0.84636 0.78683 0.73111 0.80180 1.18007 1.17846 1.17741 1.19766 0.96421 0.89350 1.37931 0.87817 1.21850 0.96401 0.96412 0.95008 1.19605 0.97737 0.90743 1.33869 1.18084 0.93062 0.92520 0.99146 1.24100 0.95675 1.03470 1.18521 1.84588 1.03525 0.91249 1.78381 1.17817 0.82017 0.90551 0.98865 1.84729 1.22018 1.89955 1.34833 1.20904 0.96285 0.93921 1.09594 1.20757 0.91228 0.99428 1.01585 1.17937 0.78564 0.91287 1.13064 1.91326 1.37119 1.90476 1.94911 0.86895 0.88350 0.73822 0.82041 0.82327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.89 10.59 21.86 0.23 -35.65 14 2 C 0.02 0.77 5.50 85.31 0.47 1.23 14 3 Si 1.02 32.75 29.56 68.60 2.03 34.77 14 4 H -0.26 -7.99 7.11 99.48 0.71 -7.28 14 5 H -0.25 -7.56 7.11 99.48 0.71 -6.85 14 6 H -0.25 -8.07 7.11 99.48 0.71 -7.37 14 7 C -0.40 -20.16 9.27 23.14 0.21 -19.95 14 8 H 0.10 4.95 7.85 -2.91 -0.02 4.93 14 9 C 0.02 1.24 6.11 22.38 0.14 1.38 14 10 C -0.40 -21.67 10.06 22.34 0.22 -21.45 14 11 C -0.02 -1.00 5.86 -21.44 -0.13 -1.12 14 12 C -0.30 -14.73 6.42 23.16 0.15 -14.58 14 13 S 0.16 8.12 20.09 -56.49 -1.13 6.99 14 14 C 0.16 6.38 6.72 22.66 0.15 6.54 14 15 O -0.50 -17.62 13.47 -93.77 -1.26 -18.88 14 16 C -0.19 -6.54 9.97 22.40 0.22 -6.31 14 17 C -0.11 -4.01 9.96 22.17 0.22 -3.79 14 18 C 0.01 0.55 7.38 23.01 0.17 0.72 14 19 F -0.16 -7.22 17.17 44.97 0.77 -6.45 14 20 H 0.32 12.50 8.30 -92.71 -0.77 11.73 14 21 H 0.10 5.38 8.06 -2.91 -0.02 5.36 14 22 H 0.40 10.01 9.07 -74.05 -0.67 9.34 14 23 H 0.16 4.33 8.06 -2.91 -0.02 4.31 14 24 H 0.16 4.54 8.06 -2.91 -0.02 4.52 14 Total: -1.00 -60.93 238.81 3.06 -57.88 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.59 Total: 18.68 kcal Atomic # 6 Polarization: -59.17 SS G_CDS: 1.83 Total: -57.33 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.23 Total: -35.65 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -1.26 Total: -18.88 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 0.77 Total: -6.45 kcal Atomic # 14 Polarization: 32.75 SS G_CDS: 2.03 Total: 34.77 kcal Atomic # 16 Polarization: 8.12 SS G_CDS: -1.13 Total: 6.99 kcal Total: -60.93 3.06 -57.88 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306743406.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.035 kcal (2) G-P(sol) polarization free energy of solvation -60.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds