Wall clock time and date at job start Mon Mar 30 2020 05:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 120.00068 * 2 1 4 4 H 1.48499 * 109.46933 * 269.99642 * 3 2 1 5 5 H 1.48500 * 109.46994 * 29.99867 * 3 2 1 6 6 H 1.48500 * 109.47050 * 149.99883 * 3 2 1 7 7 C 1.37879 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00056 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99882 * 180.02562 * 7 2 1 10 10 C 1.50699 * 109.47092 * 180.02562 * 9 7 2 11 11 C 1.38666 * 119.81559 * 90.00312 * 10 9 7 12 12 C 1.37894 * 120.45202 * 179.97438 * 11 10 9 13 13 C 1.39052 * 120.06171 * 0.02562 * 12 11 10 14 14 S 1.76201 * 120.18505 * 179.97438 * 13 12 11 15 15 C 1.40485 * 119.62262 * 359.97438 * 13 12 11 16 16 C 1.47246 * 120.21679 * 179.97438 * 15 13 12 17 17 O 1.21530 * 120.00215 * 359.72759 * 16 15 13 18 18 O 1.34777 * 119.99880 * 179.97438 * 16 15 13 19 19 C 1.37715 * 119.80608 * 270.25719 * 10 9 7 20 20 H 0.96992 * 119.99914 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47039 * 59.99887 * 9 7 2 22 22 H 1.08999 * 109.47038 * 300.00485 * 9 7 2 23 23 H 1.08001 * 119.77072 * 359.97438 * 11 10 9 24 24 H 1.07995 * 119.96666 * 179.97438 * 12 11 10 25 25 H 1.41009 * 99.99785 * 270.01640 * 14 13 12 26 26 H 0.96692 * 116.99957 * 180.02562 * 18 16 15 27 27 H 1.08001 * 120.03796 * 0.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0138 -2.6150 0.0010 11 6 4.2442 -3.2647 -1.2022 12 6 4.7043 -4.5646 -1.2176 13 6 4.9403 -5.2341 -0.0220 14 16 5.5276 -6.8953 -0.0379 15 6 4.7080 -4.5786 1.1986 16 6 4.9530 -5.2754 2.4724 17 8 5.3529 -6.4230 2.4701 18 8 4.7291 -4.6421 3.6409 19 6 4.2365 -3.2624 1.1959 20 1 -0.4849 0.8400 -0.0004 21 1 3.8746 -0.6801 0.8911 22 1 3.8753 -0.6805 -0.8888 23 1 4.0620 -2.7491 -2.1335 24 1 4.8806 -5.0632 -2.1591 25 1 4.2999 -7.5890 -0.0412 26 1 4.9047 -5.1402 4.4508 27 1 4.0509 -2.7526 2.1298 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306745468.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:34 Heat of formation + Delta-G solvation = -80.019241 kcal Electronic energy + Delta-G solvation = -14103.026059 eV Core-core repulsion = 11530.440316 eV Total energy + Delta-G solvation = -2572.585743 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.37192 -39.77030 -37.02118 -35.44894 -33.47477 -32.46700 -29.58145 -25.84236 -24.95874 -23.16656 -21.44772 -19.15686 -18.97760 -18.96826 -17.66287 -16.80032 -16.48328 -16.31608 -16.21843 -15.33159 -14.86479 -14.42010 -14.21455 -13.68824 -13.60842 -13.49927 -12.68377 -12.46684 -12.43417 -12.05983 -12.01755 -11.79862 -11.71105 -11.43427 -10.77640 -10.09286 -9.65368 -8.55837 -8.29042 -6.35419 -0.53574 0.13415 0.69680 1.40728 1.42984 1.53804 1.55836 1.64009 2.10363 2.37180 2.70231 3.06271 3.72459 3.97445 4.09044 4.26538 4.44443 4.60767 4.81695 5.03356 5.07331 5.13681 5.20123 5.53322 5.60187 5.71961 5.76788 6.23586 6.71309 7.03794 7.28747 8.87217 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.034642 B = 0.006459 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.066360 B = 4333.840960 C = 4766.063148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.010 3.990 3 Si 0.949 3.051 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.241 1.241 7 C -0.522 4.522 8 H 0.029 0.971 9 C 0.016 3.984 10 C -0.044 4.044 11 C -0.092 4.092 12 C -0.074 4.074 13 C -0.084 4.084 14 S -0.124 6.124 15 C -0.107 4.107 16 C 0.520 3.480 17 O -0.499 6.499 18 O -0.510 6.510 19 C -0.073 4.073 20 H 0.267 0.733 21 H 0.039 0.961 22 H 0.045 0.955 23 H 0.149 0.851 24 H 0.169 0.831 25 H 0.105 0.895 26 H 0.432 0.568 27 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.967 -7.686 1.187 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.187 4.187 3 Si 0.772 3.228 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.164 1.164 7 C -0.560 4.560 8 H 0.048 0.952 9 C -0.021 4.021 10 C -0.044 4.044 11 C -0.111 4.111 12 C -0.094 4.094 13 C -0.196 4.196 14 S 0.034 5.966 15 C -0.111 4.111 16 C 0.363 3.637 17 O -0.389 6.389 18 O -0.325 6.325 19 C -0.092 4.092 20 H 0.076 0.924 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.167 0.833 24 H 0.187 0.813 25 H 0.069 0.931 26 H 0.294 0.706 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.395 -8.504 0.835 15.055 hybrid contribution -1.506 0.977 0.696 1.925 sum 10.890 -7.527 1.531 13.326 Atomic orbital electron populations 1.70056 1.08449 1.28340 1.52062 1.25962 0.95517 1.03404 0.93844 0.85676 0.79649 0.78038 0.79457 1.18811 1.21413 1.16403 1.21108 0.90608 0.93071 1.51233 0.95229 1.18772 0.94348 0.90182 0.98824 1.20393 0.93199 0.97597 0.93246 1.21612 0.96276 0.94576 0.98679 1.21788 0.95982 0.94044 0.97582 1.21493 1.05980 0.97894 0.94242 1.86667 1.13947 0.98096 1.97920 1.19369 1.05618 0.95190 0.90884 1.20656 0.74163 0.84187 0.84727 1.91069 1.42130 1.17890 1.87777 1.84584 1.80848 1.49886 1.17149 1.21413 0.95763 0.92767 0.99306 0.92359 0.94274 0.93701 0.83281 0.81349 0.93099 0.70624 0.84268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.37 13.96 21.45 0.30 -57.07 15 2 C 0.01 0.56 5.47 84.65 0.46 1.02 15 3 Si 0.95 41.17 27.47 68.60 1.88 43.06 15 4 H -0.26 -10.88 7.11 99.48 0.71 -10.18 15 5 H -0.29 -12.55 7.11 99.48 0.71 -11.84 15 6 H -0.24 -9.49 6.54 99.48 0.65 -8.84 15 7 C -0.52 -28.25 9.65 25.60 0.25 -28.00 15 8 H 0.03 1.81 7.98 -2.91 -0.02 1.78 15 9 C 0.02 0.68 4.16 29.10 0.12 0.80 15 10 C -0.04 -1.64 5.06 -19.89 -0.10 -1.74 15 11 C -0.09 -2.89 9.67 22.29 0.22 -2.68 15 12 C -0.07 -2.04 9.79 22.38 0.22 -1.82 15 13 C -0.08 -2.57 6.16 23.01 0.14 -2.43 15 14 S -0.12 -3.47 22.71 -56.49 -1.28 -4.76 15 15 C -0.11 -3.50 5.89 -19.98 -0.12 -3.62 15 16 C 0.52 15.68 8.25 70.19 0.58 16.26 15 17 O -0.50 -16.12 14.56 19.74 0.29 -15.83 15 18 O -0.51 -12.32 12.68 -56.88 -0.72 -13.04 15 19 C -0.07 -2.57 9.25 22.53 0.21 -2.36 15 20 H 0.27 15.09 8.31 -92.71 -0.77 14.32 15 21 H 0.04 1.62 7.14 -2.39 -0.02 1.61 15 22 H 0.04 1.78 7.51 -2.39 -0.02 1.76 15 23 H 0.15 4.19 8.06 -2.91 -0.02 4.17 15 24 H 0.17 3.52 8.06 -2.91 -0.02 3.50 15 25 H 0.10 2.75 9.55 73.80 0.70 3.46 15 26 H 0.43 5.70 9.11 -74.06 -0.67 5.02 15 27 H 0.14 4.84 7.61 -2.91 -0.02 4.81 15 Total: -1.00 -66.27 258.80 3.64 -62.63 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.20 Total: 9.58 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 1.98 Total: -24.57 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.30 Total: -57.07 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.43 Total: -28.87 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.88 Total: 43.06 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.28 Total: -4.76 kcal Total: -66.27 3.64 -62.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306745468.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.389 kcal (2) G-P(sol) polarization free energy of solvation -66.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds