Wall clock time and date at job start Mon Mar 30 2020 05:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30925 * 1 3 3 Si 1.86800 * 119.99907 * 2 1 4 4 H 1.48504 * 109.47437 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47368 * 300.00040 * 3 2 1 6 6 H 1.48505 * 109.47237 * 59.99614 * 3 2 1 7 7 C 1.39864 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99718 * 199.67006 * 7 2 1 9 9 C 1.40891 * 120.00201 * 19.66715 * 7 2 1 10 10 C 1.42092 * 120.11288 * 217.01793 * 9 7 2 11 11 S 1.75895 * 130.41740 * 359.97438 * 10 9 7 12 12 C 1.75301 * 92.21972 * 180.02562 * 11 10 9 13 13 O 1.35758 * 124.37416 * 180.02562 * 12 11 10 14 14 C 1.32533 * 111.24571 * 359.97438 * 12 11 10 15 15 C 1.39307 * 119.70543 * 180.02562 * 10 9 7 16 16 C 1.41485 * 119.05434 * 0.02562 * 15 10 9 17 17 C 1.37651 * 120.96050 * 0.02562 * 16 15 10 18 18 C 1.38201 * 120.69867 * 0.24698 * 17 16 15 19 19 F 1.35100 * 120.09573 * 179.74598 * 18 17 16 20 20 H 0.96999 * 120.00081 * 359.97438 * 1 2 3 21 21 H 0.96703 * 113.99476 * 269.99327 * 13 12 11 22 22 H 1.07993 * 122.62085 * 179.97438 * 14 12 11 23 23 H 1.08000 * 119.51792 * 180.02562 * 16 15 10 24 24 H 1.07994 * 119.65080 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.7033 1.3465 0.0006 5 1 1.8845 2.3965 -1.2125 6 1 1.8844 2.3965 1.2125 7 6 2.0086 -1.2112 0.0005 8 1 3.0414 -1.2383 0.3154 9 6 1.3659 -2.3960 -0.4096 10 6 1.6501 -3.6246 0.2452 11 16 2.7403 -3.9805 1.5789 12 6 2.3187 -5.6820 1.5591 13 8 2.8394 -6.6105 2.4014 14 6 1.4250 -5.9443 0.6161 15 6 1.0101 -4.7911 -0.1676 16 6 0.0858 -4.7261 -1.2368 17 6 -0.1845 -3.5330 -1.8677 18 6 0.4461 -2.3680 -1.4740 19 9 0.1755 -1.2045 -2.1052 20 1 -0.4850 0.8400 0.0004 21 1 3.6431 -7.0347 2.0708 22 1 1.0365 -6.9368 0.4423 23 1 -0.4150 -5.6258 -1.5627 24 1 -0.8935 -3.5078 -2.6819 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306771707.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:46 Heat of formation + Delta-G solvation = -50.286504 kcal Electronic energy + Delta-G solvation = -14190.442434 eV Core-core repulsion = 11495.685694 eV Total energy + Delta-G solvation = -2694.756740 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.03742 -38.32457 -37.19041 -34.10565 -32.67335 -30.20109 -27.16181 -25.50323 -22.43764 -21.41294 -20.14926 -18.17009 -17.35955 -16.26300 -15.64950 -15.15960 -14.94380 -14.34770 -13.91693 -13.78406 -13.03580 -12.73311 -12.12357 -12.09744 -11.72015 -11.46099 -11.34869 -10.92070 -10.87024 -10.42183 -9.85738 -9.66929 -9.41327 -9.20200 -8.36919 -7.24050 -7.01892 -6.76576 -4.56437 1.59479 2.23108 2.43455 2.92146 3.01341 3.04694 3.10020 3.21249 3.87064 4.44061 4.58804 5.13138 5.81175 5.82409 5.97135 6.22322 6.32899 6.41930 6.87069 6.99148 7.09946 7.33527 7.37547 7.53416 7.68970 7.88684 8.22131 8.54118 8.63115 10.04011 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.029750 B = 0.009908 C = 0.007699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.949036 B = 2825.193935 C = 3636.052804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.460 4.460 8 H 0.088 0.912 9 C 0.121 3.879 10 C -0.176 4.176 11 S 0.054 5.946 12 C 0.001 3.999 13 O -0.463 6.463 14 C -0.144 4.144 15 C -0.055 4.055 16 C -0.184 4.184 17 C -0.113 4.113 18 C 0.030 3.970 19 F -0.139 7.139 20 H 0.286 0.714 21 H 0.382 0.618 22 H 0.134 0.866 23 H 0.105 0.895 24 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 -5.236 -0.150 6.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.488 4.488 8 H 0.106 0.894 9 C 0.114 3.886 10 C -0.291 4.291 11 S 0.315 5.685 12 C -0.158 4.158 13 O -0.271 6.271 14 C -0.178 4.178 15 C -0.061 4.061 16 C -0.206 4.206 17 C -0.133 4.133 18 C 0.006 3.994 19 F -0.118 7.118 20 H 0.097 0.903 21 H 0.236 0.764 22 H 0.152 0.848 23 H 0.123 0.877 24 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.569 -4.078 1.144 5.539 hybrid contribution -0.416 -0.086 -1.154 1.230 sum 3.153 -4.164 -0.010 5.223 Atomic orbital electron populations 1.69796 1.07823 1.30191 1.31176 1.25820 0.94705 1.01410 0.92330 0.86187 0.80996 0.80563 0.78731 1.18170 1.19386 1.19803 1.19347 0.99051 0.91104 1.39320 0.89438 1.16788 0.91539 0.90634 0.89613 1.22190 1.07592 0.97492 1.01864 1.83838 1.46898 1.00836 1.36977 1.22166 1.03135 0.93098 0.97412 1.84831 1.45597 1.53003 1.43661 1.21357 1.00649 0.99384 0.96392 1.18597 0.99267 0.90687 0.97582 1.19916 1.03887 0.96612 1.00221 1.20422 1.00067 0.92170 1.00611 1.17393 1.04948 0.80756 0.96349 1.91330 1.92774 1.47367 1.80286 0.90277 0.76359 0.84822 0.87680 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.10 11.16 55.54 0.62 -19.48 14 2 C 0.08 2.00 4.49 -17.33 -0.08 1.92 14 3 Si 0.91 18.85 29.60 -169.99 -5.03 13.82 14 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 14 5 H -0.27 -5.51 7.11 56.52 0.40 -5.10 14 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 14 7 C -0.46 -12.07 8.64 -37.97 -0.33 -12.40 14 8 H 0.09 2.22 7.92 -52.48 -0.42 1.80 14 9 C 0.12 3.18 5.41 -106.49 -0.58 2.61 14 10 C -0.18 -4.26 6.35 -37.71 -0.24 -4.50 14 11 S 0.05 1.13 22.94 -107.50 -2.47 -1.34 14 12 C 0.00 0.02 7.47 28.82 0.22 0.24 14 13 O -0.46 -7.17 13.64 -18.98 -0.26 -7.43 14 14 C -0.14 -2.76 10.42 -38.61 -0.40 -3.16 14 15 C -0.05 -1.22 6.03 -105.38 -0.64 -1.85 14 16 C -0.18 -3.93 10.09 -38.56 -0.39 -4.31 14 17 C -0.11 -2.54 9.95 -39.81 -0.40 -2.93 14 18 C 0.03 0.77 6.67 -38.67 -0.26 0.51 14 19 F -0.14 -3.68 14.29 2.25 0.03 -3.64 14 20 H 0.29 6.82 8.30 -40.82 -0.34 6.48 14 21 H 0.38 3.81 9.06 45.56 0.41 4.23 14 22 H 0.13 2.18 8.06 -52.49 -0.42 1.75 14 23 H 0.11 1.90 8.06 -52.49 -0.42 1.48 14 24 H 0.11 2.14 8.06 -52.49 -0.42 1.72 14 LS Contribution 237.94 15.07 3.59 3.59 Total: -1.00 -28.95 237.94 -7.01 -35.96 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -0.41 Total: 2.42 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -3.09 Total: -23.89 kcal Atomic # 7 Polarization: -20.10 SS G_CDS: 0.62 Total: -19.48 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.26 Total: -7.43 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.03 Total: -3.64 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.47 Total: -1.34 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -28.95 -7.01 -35.96 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306771707.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.328 kcal (2) G-P(sol) polarization free energy of solvation -28.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds