Wall clock time and date at job start Mon Mar 30 2020 05:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30925 * 1 3 3 Si 1.86800 * 119.99907 * 2 1 4 4 H 1.48504 * 109.47437 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47368 * 300.00040 * 3 2 1 6 6 H 1.48505 * 109.47237 * 59.99614 * 3 2 1 7 7 C 1.39864 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99718 * 199.67006 * 7 2 1 9 9 C 1.40891 * 120.00201 * 19.66715 * 7 2 1 10 10 C 1.42092 * 120.11288 * 217.01793 * 9 7 2 11 11 S 1.75895 * 130.41740 * 359.97438 * 10 9 7 12 12 C 1.75301 * 92.21972 * 180.02562 * 11 10 9 13 13 O 1.35758 * 124.37416 * 180.02562 * 12 11 10 14 14 C 1.32533 * 111.24571 * 359.97438 * 12 11 10 15 15 C 1.39307 * 119.70543 * 180.02562 * 10 9 7 16 16 C 1.41485 * 119.05434 * 0.02562 * 15 10 9 17 17 C 1.37651 * 120.96050 * 0.02562 * 16 15 10 18 18 C 1.38201 * 120.69867 * 0.24698 * 17 16 15 19 19 F 1.35100 * 120.09573 * 179.74598 * 18 17 16 20 20 H 0.96999 * 120.00081 * 359.97438 * 1 2 3 21 21 H 0.96703 * 113.99476 * 269.99327 * 13 12 11 22 22 H 1.07993 * 122.62085 * 179.97438 * 14 12 11 23 23 H 1.08000 * 119.51792 * 180.02562 * 16 15 10 24 24 H 1.07994 * 119.65080 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.7033 1.3465 0.0006 5 1 1.8845 2.3965 -1.2125 6 1 1.8844 2.3965 1.2125 7 6 2.0086 -1.2112 0.0005 8 1 3.0414 -1.2383 0.3154 9 6 1.3659 -2.3960 -0.4096 10 6 1.6501 -3.6246 0.2452 11 16 2.7403 -3.9805 1.5789 12 6 2.3187 -5.6820 1.5591 13 8 2.8394 -6.6105 2.4014 14 6 1.4250 -5.9443 0.6161 15 6 1.0101 -4.7911 -0.1676 16 6 0.0858 -4.7261 -1.2368 17 6 -0.1845 -3.5330 -1.8677 18 6 0.4461 -2.3680 -1.4740 19 9 0.1755 -1.2045 -2.1052 20 1 -0.4850 0.8400 0.0004 21 1 3.6431 -7.0347 2.0708 22 1 1.0365 -6.9368 0.4423 23 1 -0.4150 -5.6258 -1.5627 24 1 -0.8935 -3.5078 -2.6819 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306771707.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:46 Heat of formation + Delta-G solvation = -68.791478 kcal Electronic energy + Delta-G solvation = -14191.244870 eV Core-core repulsion = 11495.685694 eV Total energy + Delta-G solvation = -2695.559176 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.98141 -39.91183 -38.68723 -35.88232 -34.32645 -32.01890 -28.81997 -27.34626 -24.11501 -23.13611 -21.79533 -19.74381 -19.08960 -17.98859 -17.34954 -16.81074 -16.62203 -16.00419 -15.74122 -15.48631 -14.70285 -14.37167 -13.87908 -13.75876 -13.41163 -13.31208 -12.99617 -12.69104 -12.49164 -12.07343 -11.45881 -11.34024 -11.09157 -10.95935 -10.10214 -8.97699 -8.84367 -8.51478 -6.47937 -0.01302 0.61062 0.67994 1.27073 1.34673 1.35095 1.49225 1.55413 2.16195 2.63877 3.23496 3.28227 4.08453 4.24833 4.37429 4.54618 4.75718 4.89119 5.10419 5.19782 5.41226 5.56855 5.61939 5.76998 6.03896 6.34062 6.60745 6.69289 6.75663 8.23414 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.029750 B = 0.009908 C = 0.007699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.949036 B = 2825.193935 C = 3636.052804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.039 3.961 3 Si 0.977 3.023 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.495 4.495 8 H 0.081 0.919 9 C 0.091 3.909 10 C -0.205 4.205 11 S 0.037 5.963 12 C 0.025 3.975 13 O -0.457 6.457 14 C -0.148 4.148 15 C -0.065 4.065 16 C -0.170 4.170 17 C -0.117 4.117 18 C -0.008 4.008 19 F -0.153 7.153 20 H 0.291 0.709 21 H 0.412 0.588 22 H 0.172 0.828 23 H 0.147 0.853 24 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.527 -7.165 0.120 7.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.178 4.178 3 Si 0.797 3.203 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.523 4.523 8 H 0.099 0.901 9 C 0.085 3.915 10 C -0.320 4.320 11 S 0.297 5.703 12 C -0.135 4.135 13 O -0.269 6.269 14 C -0.181 4.181 15 C -0.072 4.072 16 C -0.192 4.192 17 C -0.137 4.137 18 C -0.032 4.032 19 F -0.132 7.132 20 H 0.102 0.898 21 H 0.271 0.729 22 H 0.189 0.811 23 H 0.165 0.835 24 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.853 -6.047 1.411 7.307 hybrid contribution -0.468 0.231 -1.177 1.287 sum 3.385 -5.816 0.234 6.733 Atomic orbital electron populations 1.69839 1.09171 1.31164 1.32989 1.26636 0.95380 1.04409 0.91414 0.85218 0.79645 0.76338 0.79054 1.17827 1.18997 1.18647 1.19490 0.99075 0.92313 1.41459 0.90082 1.17149 0.92401 0.91741 0.90241 1.22521 1.08722 0.97744 1.03045 1.83811 1.46612 1.03701 1.36161 1.22042 1.02447 0.92156 0.96805 1.84775 1.47157 1.51797 1.43201 1.21521 1.00756 0.99851 0.95938 1.19112 0.98871 0.91244 0.97972 1.20442 1.02504 0.97480 0.98746 1.20765 1.00090 0.91581 1.01291 1.17831 1.06570 0.81419 0.97362 1.91273 1.93020 1.48336 1.80560 0.89836 0.72892 0.81079 0.83545 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.82 11.16 21.82 0.24 -43.58 14 2 C 0.04 2.04 4.49 85.22 0.38 2.42 14 3 Si 0.98 39.63 29.60 68.60 2.03 41.66 14 4 H -0.25 -10.03 7.11 99.48 0.71 -9.33 14 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 14 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 14 7 C -0.49 -27.01 8.64 23.31 0.20 -26.81 14 8 H 0.08 4.32 7.92 -2.91 -0.02 4.29 14 9 C 0.09 4.93 5.41 -21.07 -0.11 4.81 14 10 C -0.20 -9.95 6.35 23.48 0.15 -9.80 14 11 S 0.04 1.53 22.94 -56.49 -1.30 0.24 14 12 C 0.03 0.87 7.47 66.68 0.50 1.37 14 13 O -0.46 -12.20 13.64 -90.84 -1.24 -13.44 14 14 C -0.15 -5.12 10.42 22.99 0.24 -4.88 14 15 C -0.06 -2.76 6.03 -20.36 -0.12 -2.88 14 16 C -0.17 -6.81 10.09 22.93 0.23 -6.58 14 17 C -0.12 -5.18 9.95 22.12 0.22 -4.96 14 18 C -0.01 -0.41 6.67 22.86 0.15 -0.26 14 19 F -0.15 -8.40 14.29 44.97 0.64 -7.76 14 20 H 0.29 14.35 8.30 -92.71 -0.77 13.58 14 21 H 0.41 6.24 9.06 -74.05 -0.67 5.57 14 22 H 0.17 4.62 8.06 -2.91 -0.02 4.60 14 23 H 0.15 4.59 8.06 -2.91 -0.02 4.57 14 24 H 0.13 5.09 8.06 -2.91 -0.02 5.07 14 Total: -1.00 -64.01 237.94 2.81 -61.20 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.59 Total: 9.24 kcal Atomic # 6 Polarization: -49.41 SS G_CDS: 1.84 Total: -47.57 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.24 Total: -43.58 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -1.24 Total: -13.44 kcal Atomic # 9 Polarization: -8.40 SS G_CDS: 0.64 Total: -7.76 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.30 Total: 0.24 kcal Total: -64.01 2.81 -61.20 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306771707.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.590 kcal (2) G-P(sol) polarization free energy of solvation -64.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds