Wall clock time and date at job start Mon Mar 30 2020 05:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31002 * 1 3 3 Si 1.86794 * 119.99955 * 2 1 4 4 H 1.48495 * 109.47437 * 269.99868 * 3 2 1 5 5 H 1.48504 * 109.47288 * 29.99813 * 3 2 1 6 6 H 1.48499 * 109.47448 * 149.99610 * 3 2 1 7 7 C 1.39786 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00068 * 159.51422 * 7 2 1 9 9 C 1.41016 * 120.00213 * 339.52279 * 7 2 1 10 10 C 1.41340 * 120.12536 * 323.58549 * 9 7 2 11 11 F 1.35092 * 119.95121 * 0.02562 * 10 9 7 12 12 C 1.35796 * 120.09924 * 179.97438 * 10 9 7 13 13 C 1.40641 * 120.99029 * 0.02738 * 12 10 9 14 14 S 1.76032 * 130.17308 * 179.97438 * 13 12 10 15 15 C 1.75269 * 92.23825 * 179.97438 * 14 13 12 16 16 C 1.31701 * 111.45497 * 0.02562 * 15 14 13 17 17 C 1.39831 * 120.24520 * 359.97438 * 13 12 10 18 18 C 1.40584 * 120.13316 * 143.31514 * 9 7 2 19 19 O 1.35554 * 120.05941 * 359.97438 * 18 9 7 20 20 H 0.96994 * 120.00044 * 0.02562 * 1 2 3 21 21 H 1.08005 * 119.50889 * 180.02562 * 12 10 9 22 22 H 1.07997 * 124.26772 * 180.02562 * 15 14 13 23 23 H 1.08000 * 122.55554 * 180.02562 * 16 15 14 24 24 H 0.96699 * 114.00228 * 90.00260 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2440 1.6177 0.0000 4 1 2.4915 2.0464 -1.4000 5 1 1.4414 2.6527 0.7000 6 1 3.5415 1.4402 0.7001 7 6 2.0090 -1.2106 0.0005 8 1 3.0377 -1.2403 -0.3268 9 6 1.3708 -2.3931 0.4283 10 6 0.4445 -2.3532 1.4951 11 9 0.1694 -1.1801 2.1060 12 6 -0.1702 -3.4922 1.9063 13 6 0.0994 -4.7251 1.2856 14 16 -0.5475 -6.3284 1.6165 15 6 0.4095 -7.0532 0.3395 16 6 1.1499 -6.1550 -0.2766 17 6 1.0109 -4.7966 0.2277 18 6 1.6490 -3.6152 -0.2084 19 8 2.5318 -3.6598 -1.2361 20 1 -0.4850 0.8400 -0.0004 21 1 -0.8767 -3.4506 2.7221 22 1 0.3940 -8.1037 0.0894 23 1 1.8093 -6.4070 -1.0940 24 1 3.4454 -3.8207 -0.9632 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306785142.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:00 Heat of formation + Delta-G solvation = -67.702871 kcal Electronic energy + Delta-G solvation = -14377.689578 eV Core-core repulsion = 11682.177607 eV Total energy + Delta-G solvation = -2695.511971 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.25313 -40.25517 -37.35783 -36.25871 -34.79754 -31.37666 -29.37784 -27.26632 -24.14612 -23.15887 -21.54478 -19.70555 -19.12367 -17.73278 -17.21861 -17.13604 -16.66448 -15.98725 -15.71752 -15.24285 -14.85351 -14.30630 -13.96791 -13.81012 -13.55439 -13.24632 -13.03129 -12.64539 -12.25093 -11.88436 -11.78501 -11.48088 -11.16306 -10.85541 -10.04976 -9.09923 -8.81997 -8.46942 -6.41944 0.01937 0.49580 0.85039 1.26580 1.34921 1.38887 1.51080 1.59456 2.17283 2.54137 3.18397 3.62954 3.94438 4.06088 4.18754 4.55385 4.78427 4.93125 5.05287 5.18831 5.23268 5.42390 5.54936 5.68344 6.01328 6.25641 6.57189 6.74084 7.24839 8.23901 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.041960 B = 0.008617 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.135233 B = 3248.774600 C = 3785.686170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.034 3.966 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.481 4.481 8 H 0.090 0.910 9 C 0.038 3.962 10 C 0.062 3.938 11 F -0.145 7.145 12 C -0.121 4.121 13 C -0.215 4.215 14 S 0.063 5.937 15 C -0.181 4.181 16 C -0.127 4.127 17 C -0.085 4.085 18 C 0.015 3.985 19 O -0.486 6.486 20 H 0.291 0.709 21 H 0.127 0.873 22 H 0.201 0.799 23 H 0.156 0.844 24 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.171 -7.293 1.488 7.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.183 4.183 3 Si 0.804 3.196 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.509 4.509 8 H 0.108 0.892 9 C 0.033 3.967 10 C 0.040 3.960 11 F -0.124 7.124 12 C -0.145 4.145 13 C -0.330 4.330 14 S 0.322 5.678 15 C -0.314 4.314 16 C -0.158 4.158 17 C -0.093 4.093 18 C -0.034 4.034 19 O -0.295 6.295 20 H 0.101 0.899 21 H 0.145 0.855 22 H 0.218 0.782 23 H 0.173 0.827 24 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.419 -7.628 2.155 7.938 hybrid contribution 1.420 1.661 -0.618 2.270 sum 1.839 -5.968 1.537 6.431 Atomic orbital electron populations 1.69887 1.09357 1.31311 1.33380 1.26747 0.95390 1.04767 0.91381 0.85165 0.79201 0.75638 0.79605 1.18376 1.19363 1.17761 1.19420 0.99837 0.91865 1.39825 0.89178 1.18029 0.93117 0.94665 0.90869 1.17352 1.02498 0.80485 0.95707 1.91326 1.92641 1.46960 1.81429 1.19818 1.02099 0.90259 1.02280 1.21897 1.08354 0.97744 1.04975 1.83308 1.49266 0.96483 1.38698 1.25238 1.01516 1.04357 1.00313 1.20991 1.02753 0.89660 1.02356 1.19708 0.99339 0.94034 0.96200 1.18208 1.01112 0.90377 0.93697 1.84667 1.19990 1.94334 1.30512 0.89859 0.85545 0.78206 0.82668 0.76647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.25 11.13 21.81 0.24 -44.01 14 2 C 0.03 1.75 4.47 85.19 0.38 2.13 14 3 Si 0.98 38.97 29.61 68.60 2.03 41.00 14 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 14 5 H -0.27 -10.30 7.11 99.48 0.71 -9.59 14 6 H -0.25 -9.71 7.11 99.48 0.71 -9.00 14 7 C -0.48 -25.81 8.44 23.33 0.20 -25.62 14 8 H 0.09 4.58 7.87 -2.91 -0.02 4.55 14 9 C 0.04 2.05 5.40 -21.26 -0.11 1.93 14 10 C 0.06 3.26 6.61 22.47 0.15 3.41 14 11 F -0.14 -7.88 14.22 44.97 0.64 -7.25 14 12 C -0.12 -5.71 9.95 22.29 0.22 -5.49 14 13 C -0.22 -9.36 6.50 23.24 0.15 -9.21 14 14 S 0.06 2.09 23.23 -56.49 -1.31 0.77 14 15 C -0.18 -5.24 11.01 67.13 0.74 -4.50 14 16 C -0.13 -4.37 10.27 23.47 0.24 -4.13 14 17 C -0.09 -3.76 6.03 -20.28 -0.12 -3.89 14 18 C 0.02 0.73 6.80 23.56 0.16 0.89 14 19 O -0.49 -21.24 12.78 -88.60 -1.13 -22.37 14 20 H 0.29 14.40 8.30 -92.71 -0.77 13.63 14 21 H 0.13 5.32 8.06 -2.91 -0.02 5.30 14 22 H 0.20 3.91 8.06 -2.91 -0.02 3.89 14 23 H 0.16 4.59 8.06 -2.91 -0.02 4.56 14 24 H 0.38 12.64 9.06 -74.06 -0.67 11.97 14 Total: -1.00 -63.12 237.18 3.06 -60.06 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.59 Total: 16.24 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 2.00 Total: -44.45 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.24 Total: -44.01 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -1.13 Total: -22.37 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 0.64 Total: -7.25 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -1.31 Total: 0.77 kcal Total: -63.12 3.06 -60.06 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306785142.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.642 kcal (2) G-P(sol) polarization free energy of solvation -63.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds