Wall clock time and date at job start Mon Mar 30 2020 05:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30988 * 1 3 3 Si 1.86804 * 119.99831 * 2 1 4 4 H 1.48502 * 109.46906 * 239.99467 * 3 2 1 5 5 H 1.48496 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47253 * 119.99570 * 3 2 1 7 7 C 1.39766 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00031 * 162.63124 * 7 2 1 9 9 C 1.41019 * 119.99853 * 342.63262 * 7 2 1 10 10 C 1.41104 * 120.11102 * 334.42076 * 9 7 2 11 11 C 1.35756 * 120.14294 * 180.02562 * 10 9 7 12 12 F 1.35098 * 119.51403 * 179.97438 * 11 10 9 13 13 C 1.40895 * 120.97138 * 359.97438 * 11 10 9 14 14 S 1.76015 * 130.18990 * 179.97438 * 13 11 10 15 15 C 1.75274 * 92.23189 * 179.84022 * 14 13 11 16 16 C 1.31776 * 111.42279 * 0.34504 * 15 14 13 17 17 C 1.39756 * 120.21081 * 0.02562 * 13 11 10 18 18 C 1.40642 * 120.10401 * 154.43241 * 9 7 2 19 19 O 1.35542 * 120.06084 * 0.02562 * 18 9 7 20 20 H 0.96998 * 120.00275 * 0.02562 * 1 2 3 21 21 H 1.08003 * 119.92953 * 0.05601 * 10 9 7 22 22 H 1.08002 * 124.29029 * 180.22832 * 15 14 13 23 23 H 1.08006 * 122.56452 * 179.86130 * 16 15 14 24 24 H 0.96694 * 114.00464 * 269.93220 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 3.0977 1.6964 -1.2125 5 1 1.2789 2.7465 -0.0006 6 1 3.0975 1.6966 1.2125 7 6 2.0088 -1.2104 0.0005 8 1 3.0519 -1.2317 -0.2787 9 6 1.3520 -2.4036 0.3656 10 6 0.2267 -2.3607 1.2159 11 6 -0.4058 -3.5091 1.5682 12 9 -1.4816 -3.4532 2.3834 13 6 0.0433 -4.7583 1.0962 14 16 -0.5821 -6.3765 1.3934 15 6 0.6471 -7.1115 0.3831 16 6 1.4589 -6.2054 -0.1234 17 6 1.1551 -4.8331 0.2526 18 6 1.8165 -3.6405 -0.1164 19 8 2.8974 -3.6883 -0.9329 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1325 -1.4121 1.5869 22 1 0.7301 -8.1727 0.2003 23 1 2.2841 -6.4614 -0.7714 24 1 2.6827 -3.6274 -1.8737 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306834906.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:02 Heat of formation + Delta-G solvation = -75.401994 kcal Electronic energy + Delta-G solvation = -14215.629922 eV Core-core repulsion = 11519.784092 eV Total energy + Delta-G solvation = -2695.845830 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 238.020 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.75562 -40.28061 -37.24062 -36.71286 -34.60506 -31.09119 -29.47837 -27.43861 -24.32268 -22.98966 -21.64044 -19.71130 -19.05669 -18.02950 -17.65594 -16.77508 -16.60485 -16.28752 -15.74054 -15.37004 -14.99558 -14.38223 -14.15768 -13.75892 -13.40382 -13.16898 -12.78772 -12.62677 -12.40588 -12.01778 -11.84942 -11.68129 -11.04300 -10.95744 -10.01452 -9.35701 -8.89343 -8.44007 -6.47051 0.02232 0.45793 0.83356 1.25587 1.36405 1.41240 1.51760 1.63223 2.15016 2.44735 3.27219 3.52401 3.87327 3.94104 4.41620 4.51123 4.75940 4.95838 5.08526 5.17336 5.26646 5.40006 5.58157 5.72206 6.00686 6.30163 6.56236 6.68157 7.27692 8.12980 Molecular weight = 238.02amu Principal moments of inertia in cm(-1) A = 0.035983 B = 0.008680 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.967157 B = 3225.201671 C = 3920.345375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.035 3.965 3 Si 0.991 3.009 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.458 4.458 8 H 0.092 0.908 9 C 0.086 3.914 10 C -0.174 4.174 11 C 0.116 3.884 12 F -0.159 7.159 13 C -0.287 4.287 14 S 0.048 5.952 15 C -0.173 4.173 16 C -0.130 4.130 17 C -0.046 4.046 18 C -0.029 4.029 19 O -0.487 6.487 20 H 0.297 0.703 21 H 0.127 0.873 22 H 0.204 0.796 23 H 0.161 0.839 24 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.347 -5.092 -1.449 5.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.182 4.182 3 Si 0.810 3.190 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.110 0.890 9 C 0.082 3.918 10 C -0.195 4.195 11 C 0.093 3.907 12 F -0.138 7.138 13 C -0.402 4.402 14 S 0.307 5.693 15 C -0.306 4.306 16 C -0.160 4.160 17 C -0.054 4.054 18 C -0.078 4.078 19 O -0.295 6.295 20 H 0.108 0.892 21 H 0.145 0.855 22 H 0.220 0.780 23 H 0.179 0.821 24 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.216 -5.620 -0.083 5.625 hybrid contribution 0.685 1.500 -1.038 1.949 sum 0.901 -4.120 -1.121 4.364 Atomic orbital electron populations 1.69888 1.09204 1.31746 1.32682 1.26942 0.95510 1.05063 0.90711 0.85102 0.78715 0.74719 0.80438 1.17761 1.18985 1.18447 1.19711 0.98667 0.91192 1.39032 0.89004 1.17747 0.90607 0.93230 0.90234 1.20845 1.00573 0.95880 1.02243 1.16787 0.86514 0.92990 0.94421 1.91352 1.53865 1.97400 1.71136 1.22097 1.06682 0.96253 1.15121 1.83415 1.35743 0.95347 1.54800 1.25301 0.98566 1.04382 1.02326 1.21043 1.02195 0.89229 1.03578 1.19468 0.93734 0.94443 0.97716 1.18273 0.95658 0.90202 1.03662 1.84636 1.29503 1.95581 1.19823 0.89221 0.85509 0.77955 0.82138 0.77053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.87 10.98 21.80 0.24 -39.64 14 2 C 0.04 1.66 5.13 85.19 0.44 2.10 14 3 Si 0.99 35.50 29.59 68.60 2.03 37.53 14 4 H -0.25 -8.71 7.11 99.48 0.71 -8.01 14 5 H -0.27 -8.99 7.11 99.48 0.71 -8.28 14 6 H -0.26 -9.27 7.11 99.48 0.71 -8.56 14 7 C -0.46 -23.26 8.67 23.32 0.20 -23.06 14 8 H 0.09 4.54 7.63 -2.91 -0.02 4.52 14 9 C 0.09 4.55 5.56 -21.31 -0.12 4.43 14 10 C -0.17 -9.22 8.55 22.40 0.19 -9.02 14 11 C 0.12 5.85 7.26 22.34 0.16 6.01 14 12 F -0.16 -7.67 17.24 44.97 0.78 -6.90 14 13 C -0.29 -13.35 6.48 23.29 0.15 -13.20 14 14 S 0.05 1.76 23.23 -56.49 -1.31 0.45 14 15 C -0.17 -5.27 11.01 67.07 0.74 -4.53 14 16 C -0.13 -4.58 10.27 23.39 0.24 -4.34 14 17 C -0.05 -2.09 6.03 -20.29 -0.12 -2.21 14 18 C -0.03 -1.40 6.81 23.61 0.16 -1.24 14 19 O -0.49 -20.86 12.65 -88.47 -1.12 -21.98 14 20 H 0.30 13.11 8.30 -92.71 -0.77 12.34 14 21 H 0.13 6.89 6.19 -2.91 -0.02 6.88 14 22 H 0.20 4.19 8.06 -2.91 -0.02 4.17 14 23 H 0.16 4.77 8.06 -2.91 -0.02 4.75 14 24 H 0.37 12.93 9.06 -74.06 -0.67 12.26 14 Total: -1.00 -58.79 238.10 3.25 -55.54 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.59 Total: 20.06 kcal Atomic # 6 Polarization: -47.10 SS G_CDS: 2.04 Total: -45.05 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.24 Total: -39.64 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -1.12 Total: -21.98 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.78 Total: -6.90 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 2.03 Total: 37.53 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.31 Total: 0.45 kcal Total: -58.79 3.25 -55.54 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306834906.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.866 kcal (2) G-P(sol) polarization free energy of solvation -58.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds